View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17885_low_7 (Length: 389)

Name: NF17885_low_7
Description: NF17885
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17885_low_7
NF17885_low_7
[»] chr3 (18 HSPs)
chr3 (1-248)||(52651891-52652143)
chr3 (11-248)||(31895163-31895404)
chr3 (11-248)||(31899747-31899988)
chr3 (11-248)||(31915456-31915697)
chr3 (11-248)||(31949104-31949345)
chr3 (11-248)||(31683028-31683269)
chr3 (246-372)||(52651115-52651241)
chr3 (183-248)||(16062150-16062215)
chr3 (183-247)||(16058006-16058070)
chr3 (183-247)||(16040124-16040188)
chr3 (183-248)||(16036044-16036109)
chr3 (183-248)||(16046628-16046693)
chr3 (245-279)||(31682336-31682370)
chr3 (245-279)||(31896062-31896096)
chr3 (245-279)||(31900646-31900680)
chr3 (245-279)||(31916355-31916389)
chr3 (245-279)||(31950003-31950037)
chr3 (246-276)||(52651245-52651275)
[»] scaffold0005 (1 HSPs)
scaffold0005 (54-135)||(290184-290269)


Alignment Details
Target: chr3 (Bit Score: 217; Significance: 1e-119; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 248
Target Start/End: Complemental strand, 52652143 - 52651891
Alignment:
Q  1 tcccattgttaaaatcaagagagaagctttcctttatttgcagtttgtccaatgggaatagttgtgattccctcactaaaccttagatttgttccctaaa 100  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  52652143 tcccattgttaaaatcaagagagaagctttcctttattcgcagtttgtccattgggaatagttgtgattccctcactaaaccttagatttgttccctaaa 52652044  T
Q  101 ctcaagattctttctatacgggattgtcccaatctagtatctttcgatgt-----tacaggggtgtataagggtgattttgctttggagtgttttcaaat 195  Q
    |||||||||||||||||||||| ||||||||||||||||||||| |||||     |||||||||||||||||||||||||||||||||||||||||||||    
T  52652043 ctcaagattctttctatacggggttgtcccaatctagtatcttttgatgttacagtacaggggtgtataagggtgattttgctttggagtgttttcaaat 52651944  T
Q  196 aagagattgtcctggattgacgtctttcccagatgaaggatttcatacaccaa 248  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52651943 aagagattgtcctggattgacgtctttcccagatgaaggatttcatacaccaa 52651891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 153; E-Value: 5e-81
Query Start/End: Original strand, 11 - 248
Target Start/End: Original strand, 31895163 - 31895404
Alignment:
Q  11 aaaatcaagagagaagctttcctttatttgcagtttgtccaatgggaatagttgtgattccctcactaa----accttagatttgttccctaaactcaag 106  Q
    ||||||||||||||| ||||||||||||  ||| ||||||| |||||||||||||||||| |||||||     |||||||||||||||||||||||||||    
T  31895163 aaaatcaagagagaatctttcctttattcacagattgtccattgggaatagttgtgattctctcactaccttgaccttagatttgttccctaaactcaag 31895262  T
Q  107 attctttctatacgggattgtcccaatctagtatctttcgatgttacaggggtgtataagggtgattttgctttggagtgttttcaaataagagattgtc 206  Q
    ||||||| |||| || | |||||||||||||||||||| ||||||||||||||| |||||||||||||| | ||||| |||||| ||||||||||||| |    
T  31895263 attctttttatatggaactgtcccaatctagtatcttttgatgttacaggggtgcataagggtgattttccattggaatgttttgaaataagagattgcc 31895362  T
Q  207 ctggattgacgtctttcccagatgaaggatttcatacaccaa 248  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  31895363 ctggattgacgtctttcccagatgaaggatttcatacaccaa 31895404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 153; E-Value: 5e-81
Query Start/End: Original strand, 11 - 248
Target Start/End: Original strand, 31899747 - 31899988
Alignment:
Q  11 aaaatcaagagagaagctttcctttatttgcagtttgtccaatgggaatagttgtgattccctcactaa----accttagatttgttccctaaactcaag 106  Q
    ||||||||||||||| ||||||||||||  ||| ||||||| |||||||||||||||||| |||||||     |||||||||||||||||||||||||||    
T  31899747 aaaatcaagagagaatctttcctttattcacagattgtccattgggaatagttgtgattctctcactaccttgaccttagatttgttccctaaactcaag 31899846  T
Q  107 attctttctatacgggattgtcccaatctagtatctttcgatgttacaggggtgtataagggtgattttgctttggagtgttttcaaataagagattgtc 206  Q
    ||||||| |||| || | |||||||||||||||||||| ||||||||||||||| |||||||||||||| | ||||| |||||| ||||||||||||| |    
T  31899847 attctttttatatggaactgtcccaatctagtatcttttgatgttacaggggtgcataagggtgattttccattggaatgttttgaaataagagattgcc 31899946  T
Q  207 ctggattgacgtctttcccagatgaaggatttcatacaccaa 248  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  31899947 ctggattgacgtctttcccagatgaaggatttcatacaccaa 31899988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 153; E-Value: 5e-81
Query Start/End: Original strand, 11 - 248
Target Start/End: Original strand, 31915456 - 31915697
Alignment:
Q  11 aaaatcaagagagaagctttcctttatttgcagtttgtccaatgggaatagttgtgattccctcactaa----accttagatttgttccctaaactcaag 106  Q
    ||||||||||||||| ||||||||||||  ||| ||||||| |||||||||||||||||| |||||||     |||||||||||||||||||||||||||    
T  31915456 aaaatcaagagagaatctttcctttattcacagattgtccattgggaatagttgtgattctctcactaccttgaccttagatttgttccctaaactcaag 31915555  T
Q  107 attctttctatacgggattgtcccaatctagtatctttcgatgttacaggggtgtataagggtgattttgctttggagtgttttcaaataagagattgtc 206  Q
    ||||||| |||| || | |||||||||||||||||||| ||||||||||||||| |||||||||||||| | ||||| |||||| ||||||||||||| |    
T  31915556 attctttttatatggaactgtcccaatctagtatcttttgatgttacaggggtgcataagggtgattttccattggaatgttttgaaataagagattgcc 31915655  T
Q  207 ctggattgacgtctttcccagatgaaggatttcatacaccaa 248  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  31915656 ctggattgacgtctttcccagatgaaggatttcatacaccaa 31915697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 153; E-Value: 5e-81
Query Start/End: Original strand, 11 - 248
Target Start/End: Original strand, 31949104 - 31949345
Alignment:
Q  11 aaaatcaagagagaagctttcctttatttgcagtttgtccaatgggaatagttgtgattccctcactaa----accttagatttgttccctaaactcaag 106  Q
    ||||||||||||||| ||||||||||||  ||| ||||||| |||||||||||||||||| |||||||     |||||||||||||||||||||||||||    
T  31949104 aaaatcaagagagaatctttcctttattcacagattgtccattgggaatagttgtgattctctcactaccttgaccttagatttgttccctaaactcaag 31949203  T
Q  107 attctttctatacgggattgtcccaatctagtatctttcgatgttacaggggtgtataagggtgattttgctttggagtgttttcaaataagagattgtc 206  Q
    ||||||| |||| || | |||||||||||||||||||| ||||||||||||||| |||||||||||||| | ||||| |||||| ||||||||||||| |    
T  31949204 attctttttatatggaactgtcccaatctagtatcttttgatgttacaggggtgcataagggtgattttccattggaatgttttgaaataagagattgcc 31949303  T
Q  207 ctggattgacgtctttcccagatgaaggatttcatacaccaa 248  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  31949304 ctggattgacgtctttcccagatgaaggatttcatacaccaa 31949345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 11 - 248
Target Start/End: Complemental strand, 31683269 - 31683028
Alignment:
Q  11 aaaatcaagagagaagctttcctttatttgcagtttgtccaatgggaatagttgtgattccctcactaa----accttagatttgttccctaaactcaag 106  Q
    ||||||||||||||| ||||||||||||  ||| |||| || |||||||||||||||||| |||||||     |||||||||||||||||||||||||||    
T  31683269 aaaatcaagagagaatctttcctttattcacagattgttcattgggaatagttgtgattctctcactaccttgaccttagatttgttccctaaactcaag 31683170  T
Q  107 attctttctatacgggattgtcccaatctagtatctttcgatgttacaggggtgtataagggtgattttgctttggagtgttttcaaataagagattgtc 206  Q
    ||||||| |||| || | |||||||||||||||||||| ||||||||||||||| |||||||||||||| | ||||| |||||| ||||||||||||| |    
T  31683169 attctttttatatggaactgtcccaatctagtatcttttgatgttacaggggtgcataagggtgattttccattggaatgttttgaaataagagattgcc 31683070  T
Q  207 ctggattgacgtctttcccagatgaaggatttcatacaccaa 248  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  31683069 ctggattgacgtctttcccagatgaaggatttcatacaccaa 31683028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 246 - 372
Target Start/End: Complemental strand, 52651241 - 52651115
Alignment:
Q  246 caactttgcagattaatattcgcttcactttttattcccacctcaatttaatgttaaacggacttcagtctcttagatgtccaaagcatgtgattgtaga 345  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52651241 caactttgcagattaatattcgcttcactttttattcccacctcaatttaatgttaaacggacttcagtctcttagatgtccaaagcatgtgattgtaga 52651142  T
Q  346 ttacagtttggacatgactcatgtact 372  Q
    |||||||||||||||||||||||||||    
T  52651141 ttacagtttggacatgactcatgtact 52651115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 183 - 248
Target Start/End: Complemental strand, 16062215 - 16062150
Alignment:
Q  183 agtgttttcaaataagagattgtcctggattgacgtctttcccagatgaaggatttcatacaccaa 248  Q
    |||||||| |||  ||||||||||||||||||||||||||| || |||||||||||||||||||||    
T  16062215 agtgttttgaaactagagattgtcctggattgacgtctttcacacatgaaggatttcatacaccaa 16062150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 183 - 247
Target Start/End: Complemental strand, 16058070 - 16058006
Alignment:
Q  183 agtgttttcaaataagagattgtcctggattgacgtctttcccagatgaaggatttcatacacca 247  Q
    |||||||| |||| ||||||||||||||||||  ||||||| || ||||||||||||||||||||    
T  16058070 agtgttttgaaattagagattgtcctggattggtgtctttcacacatgaaggatttcatacacca 16058006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 183 - 247
Target Start/End: Complemental strand, 16040188 - 16040124
Alignment:
Q  183 agtgttttcaaataagagattgtcctggattgacgtctttcccagatgaaggatttcatacacca 247  Q
    |||||||| |||  ||||||||||||||||||  ||||||| || ||||||||||||||||||||    
T  16040188 agtgttttgaaactagagattgtcctggattggtgtctttcacacatgaaggatttcatacacca 16040124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 183 - 248
Target Start/End: Complemental strand, 16036109 - 16036044
Alignment:
Q  183 agtgttttcaaataagagattgtcctggattgacgtctttcccagatgaaggatttcatacaccaa 248  Q
    |||||||| |||  |||||||||||| |||||  ||||||| || |||||||||||||||||||||    
T  16036109 agtgttttgaaactagagattgtcctagattggtgtctttcacacatgaaggatttcatacaccaa 16036044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 183 - 248
Target Start/End: Complemental strand, 16046693 - 16046628
Alignment:
Q  183 agtgttttcaaataagagattgtcctggattgacgtctttcccagatgaaggatttcatacaccaa 248  Q
    |||||||| |||  |||||||||||| |||||  ||||||| || |||||||||||||||||||||    
T  16046693 agtgttttgaaactagagattgtcctagattggtgtctttcacacatgaaggatttcatacaccaa 16046628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 245 - 279
Target Start/End: Complemental strand, 31682370 - 31682336
Alignment:
Q  245 ccaactttgcagattaatattcgcttcacttttta 279  Q
    ||||||||||||||||||||||| |||||||||||    
T  31682370 ccaactttgcagattaatattcgtttcacttttta 31682336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 245 - 279
Target Start/End: Original strand, 31896062 - 31896096
Alignment:
Q  245 ccaactttgcagattaatattcgcttcacttttta 279  Q
    ||||||||||||||||||||||| |||||||||||    
T  31896062 ccaactttgcagattaatattcgtttcacttttta 31896096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 245 - 279
Target Start/End: Original strand, 31900646 - 31900680
Alignment:
Q  245 ccaactttgcagattaatattcgcttcacttttta 279  Q
    ||||||||||||||||||||||| |||||||||||    
T  31900646 ccaactttgcagattaatattcgtttcacttttta 31900680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 245 - 279
Target Start/End: Original strand, 31916355 - 31916389
Alignment:
Q  245 ccaactttgcagattaatattcgcttcacttttta 279  Q
    ||||||||||||||||||||||| |||||||||||    
T  31916355 ccaactttgcagattaatattcgtttcacttttta 31916389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 245 - 279
Target Start/End: Original strand, 31950003 - 31950037
Alignment:
Q  245 ccaactttgcagattaatattcgcttcacttttta 279  Q
    ||||||||||||||||||||||| |||||||||||    
T  31950003 ccaactttgcagattaatattcgtttcacttttta 31950037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 246 - 276
Target Start/End: Complemental strand, 52651275 - 52651245
Alignment:
Q  246 caactttgcagattaatattcgcttcacttt 276  Q
    |||||||||||||||||||||||||||||||    
T  52651275 caactttgcagattaatattcgcttcacttt 52651245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 54 - 135
Target Start/End: Complemental strand, 290269 - 290184
Alignment:
Q  54 gggaatagttgtgattccctcactaa----accttagatttgttccctaaactcaagattctttctatacgggattgtcccaatct 135  Q
    ||||||||||||||||| |||||||     | |||| ||||||||||||||||||| ||||||| |||| || ||||| |||||||    
T  290269 gggaatagttgtgattcactcactaccttgaacttaaatttgttccctaaactcaaaattctttgtatatggaattgttccaatct 290184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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