View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17886_high_11 (Length: 383)
Name: NF17886_high_11
Description: NF17886
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17886_high_11 |
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Alignment Details
Target: chr5 (Bit Score: 318; Significance: 1e-179; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 13 - 364
Target Start/End: Complemental strand, 13204694 - 13204341
Alignment:
| Q |
13 |
aatatcttataggcacttccactatagcatgtagcgaggcttccaatcatagaactttgttgggaaactatatatgtcacagagttacatgtagtggata |
112 |
Q |
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| T |
13204694 |
aatatcttataggcacttccactatagcatgtaacgaggcttccaatcatagaactttgttgggaaactatatatgtcacatagttacatgtagtggata |
13204595 |
T |
|
| Q |
113 |
aaattgaaagaccgctaaagttattttgtgacaataaataagaagttctaatttcaataatagcatgaactagatcaggtcgagaacatagagatcaagt |
212 |
Q |
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| T |
13204594 |
aaattgaaagaccgctaaagttattttgtgacaataaataagaagttctattttcaataatagcatgaactagatcaggtcgagaacatagagatcaagt |
13204495 |
T |
|
| Q |
213 |
tctttgttgtcaaagaaataaagtgaattattgtctacataaatgttatatgcaaaattcaaattatattccaagcgagttaatgtctattttttcaaat |
312 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13204494 |
tctttgttgtcaaagaaataaaatgaattattgtctacataaatgttatatgcaaaattcaaattatattccaagcgagttaatgtctattttttcaaat |
13204395 |
T |
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| Q |
313 |
caagatcatttagttcaagaga-taagttacttcgaagactc-aacaagctgcc |
364 |
Q |
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|||||||||||||||| ||||| ||||||||||||||||||| ||||||||||| |
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| T |
13204394 |
caagatcatttagttcgagagattaagttacttcgaagactcaaacaagctgcc |
13204341 |
T |
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