View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17886_high_13 (Length: 378)
Name: NF17886_high_13
Description: NF17886
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17886_high_13 |
 | |
|
| [»] scaffold0019 (1 HSPs) |
| | |
|
Alignment Details
Target: chr4 (Bit Score: 307; Significance: 1e-173; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 9 - 355
Target Start/End: Complemental strand, 27477986 - 27477640
Alignment:
| Q |
9 |
agcaaaggaaacactaacataatatataagaaactcaaagcctataaaacttaattatcacatcaatgttaatagaggtagtcaaatagaagcagttgga |
108 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27477986 |
agcaaaagaaacactaacataatatataagaaactcaaagcctataaaacttaattatcacatcaatgttaatagaggtagtcaaatagaagcagttgga |
27477887 |
T |
|
| Q |
109 |
agcttgaacttcaagaacccagtgcatcaattcagactacataaatcacaacacattcacataaaagttcaagtttctcccctgttatgattcacttagt |
208 |
Q |
| |
|
||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||| |
|
|
| T |
27477886 |
agcctgaacttcaagaaccaagtgcatcaattcagactacataaatcacaacacattcacataaaagt--aagtttctcccctgttatgattcgcttagt |
27477789 |
T |
|
| Q |
209 |
ttctttgaatcacaacgctc--tctctcatactatataaattatttttctttgaatcacaatgctctgtctctcccctgttatgattcgtttagtttctt |
306 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
27477788 |
ttctttgaatcacaacgctctgtctctcatactatataaattatttttctttgaatcacaatgctctgtctctcccctgttatgattcatttagtttctt |
27477689 |
T |
|
| Q |
307 |
cccgcacatactatataggattgattttcttgatttgtattcccgacgg |
355 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27477688 |
cccgcacatactatataggattgattttcttgatttgtattcccgacgg |
27477640 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 78; Significance: 3e-36; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 9 - 117
Target Start/End: Original strand, 666502 - 666615
Alignment:
| Q |
9 |
agcaaaggaaacactaacataatatataagaaactcaaagcctataaaacttaattatcacatc-----aatgttaatagaggtagtcaaatagaagcag |
103 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||| |||||| | |
|
|
| T |
666502 |
agcaaaagaaacactaacataatatataagaaactcaaagcctataaaacttaattatcacatcaatataatgttaatagagatagtcaaaaagaagcgg |
666601 |
T |
|
| Q |
104 |
ttggaagcttgaac |
117 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
666602 |
ttggaagcttgaac |
666615 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 9 - 98
Target Start/End: Original strand, 7400683 - 7400771
Alignment:
| Q |
9 |
agcaaaggaaacactaacataatatataagaaactcaaagcctataaaacttaattatcacatcaatgttaatagaggtagtcaaataga |
98 |
Q |
| |
|
|||||| | ||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||| |
|
|
| T |
7400683 |
agcaaaagtaacactagaataatatacaagaaactcaaagcctataaaacttaattatcacatcaatgttaatagatgtag-caaataga |
7400771 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 64 - 144
Target Start/End: Original strand, 769228 - 769308
Alignment:
| Q |
64 |
tatcacatcaatgttaatagaggtagtcaaatagaagcagttggaagcttgaacttcaagaacccagtgcatcaattcaga |
144 |
Q |
| |
|
||||| |||||||||||||||||||||||| ||||| ||||| ||||||| |||||||| ||| |||||| ||| ||||| |
|
|
| T |
769228 |
tatcagatcaatgttaatagaggtagtcaagtagaatcagtttgaagctttaacttcaacaactaagtgcagcaaatcaga |
769308 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 70 - 98
Target Start/End: Original strand, 7422380 - 7422408
Alignment:
| Q |
70 |
atcaatgttaatagaggtagtcaaataga |
98 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
7422380 |
atcaatgttaatagaggtagtcaaataga |
7422408 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0019 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0019
Description:
Target: scaffold0019; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 249 - 309
Target Start/End: Complemental strand, 1888 - 1828
Alignment:
| Q |
249 |
atttttctttgaatcacaatgctctgtctctcccctgttatgattcgtttagtttcttccc |
309 |
Q |
| |
|
|||||||| | |||||| |||||||||||||||||||| || |||||| ||||||||||| |
|
|
| T |
1888 |
atttttctctaaatcactttgctctgtctctcccctgttgtggttcgttcagtttcttccc |
1828 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University