View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17886_high_28 (Length: 226)
Name: NF17886_high_28
Description: NF17886
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17886_high_28 |
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Alignment Details
Target: chr3 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 209
Target Start/End: Original strand, 54647336 - 54647544
Alignment:
| Q |
1 |
ggaggttgcctttatggaagtgtgagctaagaccactttcacgagaaatcttgagattttggtaaatatgatcaatttccaaaaactatagacaaacaaa |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
54647336 |
ggaggttgcctttatggaagtgtgagctaagaccactttcacgagaaatcttgagattttggtaaatatgatcaatttccaaaaactatagtcaaacaaa |
54647435 |
T |
|
| Q |
101 |
taatatataatcaattaataatgaactttgttctttgcctttagcaccattcacatagtccaagtttgtgggtgtgtacattatttacattacacatgga |
200 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54647436 |
taatatataatcaattaataatgaactttgttctttgcctttagcaccattcacatagtccaagtttgtgggtgtgtacattatttacattacacatgga |
54647535 |
T |
|
| Q |
201 |
attcagatt |
209 |
Q |
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||||||||| |
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| T |
54647536 |
attcagatt |
54647544 |
T |
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