View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17886_high_6 (Length: 476)
Name: NF17886_high_6
Description: NF17886
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17886_high_6 |
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Alignment Details
Target: chr4 (Bit Score: 383; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 19 - 455
Target Start/End: Complemental strand, 38834967 - 38834540
Alignment:
| Q |
19 |
atgtttgtacaagcaacagtgtcactacaagcaaaatgaataggagcagttctaacatcataagtacccttaatgtttttgtaggacacatcattaacat |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38834967 |
atgtttgtacaagcaacagtgtcactacaagcaaaatgaataggagcagttctaacatcataagtacccttaatgtttttgtaggacacatcattaacat |
38834868 |
T |
|
| Q |
119 |
gtacagctgaagtttgatttagacattcctttgtcaaacaatagtattggtctataaggatgcagtttcctacattctccatttgtatgttttcaaattt |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
38834867 |
gtacagctgaagtttgatttagacattcctttgtcaaacaatagtattggtctataaggatgcagtttcctacattctccatttgtatgttctcaaattt |
38834768 |
T |
|
| Q |
219 |
taaatttgacacagatcccattccaccttgccatgtctttattcttagtccattgtctgattctcttatcactgtgtcacggactgttaagtttgagaca |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38834767 |
taaatttgacacagatcccattccaccttgccatgtctttattcttagtccattgtctgattctcttatcactgtgtcacggactgttaagtttgagaca |
38834668 |
T |
|
| Q |
319 |
catgcttgagaattgtgcacaccaagacttcctatgctgtacaaaaattaacaaaacactaatcttagtgactcatgctgatatgtacatgtacgtacta |
418 |
Q |
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| T |
38834667 |
catgcttgagaattgtgcacaccaagacttcctatgctgtac-aaaattaacaaaacactaatcttagtgacccatgttgatatgtacat----gtacta |
38834573 |
T |
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| Q |
419 |
ctagaaaaatacaaaataattaagaatagattatata |
455 |
Q |
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|||||||||||||||| ||||||||||||||||| |
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| T |
38834572 |
ctagaaaaatacaaaa----taagaatagattatata |
38834540 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 112; Significance: 2e-56; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 19 - 358
Target Start/End: Original strand, 12315972 - 12316311
Alignment:
| Q |
19 |
atgtttgtacaagcaacagtgtcactacaagcaaaatgaataggagcagttctaacatcataagtacccttaatgtttttgtaggacacatcattaacat |
118 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||| ||||||| ||||| |||||||| |||||||| || ||| ||||||| | || || |||| |
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| T |
12315972 |
atgtttgtgcaagcaacagtgtcactacaagcaaaatgtataggaggtgttctcacatcatatgtaccctttatttttctgtaggagatattgtttacat |
12316071 |
T |
|
| Q |
119 |
gtacagctgaagtttgatttagacattcctttgtcaaacaatagtattggtctataaggatgcagtttcctacattctccatttgtatgttttcaaattt |
218 |
Q |
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||| ||||| ||||| || | ||| || |||| ||||| ||| |||||||||| ||| ||||||| ||||||||||||||| ||||| |||||| | |
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| T |
12316072 |
atactgctgatgtttggttcatacactcttttgataaacagtagaattggtctatgttgatacagtttcttacattctccatttggatgttgtcaaatgt |
12316171 |
T |
|
| Q |
219 |
taaatttgacacagatcccattccaccttgccatgtctttattcttagtccattgtctgattctcttatcactgtgtcacggactgttaagtttgagaca |
318 |
Q |
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|||| || || ||||| | |||||||||||||| || |||||||||||||||||||||||| |||| | || || |||||||||| |||||||||| |
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| T |
12316172 |
taaacctgttactgatcctgtaccaccttgccatgttttgattcttagtccattgtctgattcttttatgattgagtttcggactgttaggtttgagaca |
12316271 |
T |
|
| Q |
319 |
catgcttgagaattgtgcacaccaagacttcctatgctgt |
358 |
Q |
| |
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||||| ||||| ||||| || ||||| ||||| ||||||| |
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|
| T |
12316272 |
catgcatgagagttgtgtactccaaggcttccaatgctgt |
12316311 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 240 - 324
Target Start/End: Complemental strand, 38662295 - 38662211
Alignment:
| Q |
240 |
tccaccttgccatgtctttattcttagtccattgtctgattctcttatcactgtgtcacggactgttaagtttgagacacatgct |
324 |
Q |
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|||||||||||||||||| ||||||| ||||| |||||| | ||||| |||| ||| | ||||||| |||||| ||||||||| |
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| T |
38662295 |
tccaccttgccatgtcttgattcttaccccattatctgatacccttataactgagtccctcactgttatgtttgatacacatgct |
38662211 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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