View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17886_high_7 (Length: 462)
Name: NF17886_high_7
Description: NF17886
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17886_high_7 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 424; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 424; E-Value: 0
Query Start/End: Original strand, 12 - 443
Target Start/End: Original strand, 38486399 - 38486830
Alignment:
| Q |
12 |
atgaaccaggacaactactttgaggaggcacttaaagtacgaaatctcttggaagaattcaagcattactatggtattcgaaaaccaactattttgggag |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38486399 |
atgaaccaggacaactactttgaggaggcacttaaagtacgaaatctcttggaagaattcaagcattactatggtattcgaaaaccaactattttgggag |
38486498 |
T |
|
| Q |
112 |
tgagggaacatatatttacaggtttcgtttcctctcttgcttggttcatgtcagctcaggaatcaagttttgtcaccttagggcagagggttttggcaaa |
211 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38486499 |
tgagggaacatatatttacaggtttcgtttcttctcttgcttggtttatgtcagctcaggaatcaagttttgtcaccttagggcagagggttttggcaaa |
38486598 |
T |
|
| Q |
212 |
ccctttgaaaattcgaatgcattatggccatcctgatgtgtttgacaggttttggtttataactagaggtggtatcagtaaagcttctagagtgatcaac |
311 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38486599 |
ccctttgaaaattcgaatgcattatggccatcctgatgtgtttgacaggttttggtttataactagaggtggtatcagtaaagcttctagagtgatcaac |
38486698 |
T |
|
| Q |
312 |
ataagcgaggacatttttgccggttttaactgtactattcgtggaggtaatatcacacatcatgaatacattcaagttggaaaaggaagggatgttgggt |
411 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38486699 |
ataagcgaggacatttttgccggttttaactgtactattcgtggaggtaatatcacacatcatgaatacattcaagttggaaaaggaagggatgttgggt |
38486798 |
T |
|
| Q |
412 |
tgaatcaaatatcaatgtttgaagccaaggtt |
443 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
38486799 |
tgaatcaaatatcaatgtttgaagccaaggtt |
38486830 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 121 - 442
Target Start/End: Original strand, 3685739 - 3686060
Alignment:
| Q |
121 |
atatatttacaggtttcgtttcctctcttgcttggttcatgtcagctcaggaatcaagttttgtcaccttagggcagagggttttggcaaaccctttgaa |
220 |
Q |
| |
|
||||||| ||||| | ||||| || |||||||||||||||||| | || || |||||||||| || | || ||| | || |||||||||||||||| |
|
|
| T |
3685739 |
atatattcacaggctctgtttcgtcgcttgcttggttcatgtcatcccaagagacaagttttgtgacactgggccagcgatttctggcaaaccctttgaa |
3685838 |
T |
|
| Q |
221 |
aattcgaatgcattatggccatcctgatgtgtttgacaggttttggtttataactagaggtggtatcagtaaagcttctagagtgatcaacataagcgag |
320 |
Q |
| |
|
| | || ||||| || || ||||| |||||||||||||| |||||||| | ||| ||||| |||| || || |||||||||||||| || || || |
|
|
| T |
3685839 |
agtacggatgcactacggtcatccggatgtgtttgacagattttggttcttgtgtaggggtggagtcagcaaggcatctagagtgatcaatattagtgaa |
3685938 |
T |
|
| Q |
321 |
gacatttttgccggttttaactgtactattcgtggaggtaatatcacacatcatgaatacattcaagttggaaaaggaagggatgttgggttgaatcaaa |
420 |
Q |
| |
|
|| |||||||| ||||| || ||||| | || || || ||| | |||||||||||||| || || || || |||||||| |||||||| |||||||| | |
|
|
| T |
3685939 |
gatatttttgctggtttcaattgtacattgcgaggtggcaatgtgacacatcatgaatatatacaggtaggtaaaggaagagatgttggcttgaatcaga |
3686038 |
T |
|
| Q |
421 |
tatcaatgtttgaagccaaggt |
442 |
Q |
| |
|
|||| |||||||| |||||||| |
|
|
| T |
3686039 |
tatccatgtttgaggccaaggt |
3686060 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 351 - 436
Target Start/End: Complemental strand, 26002355 - 26002270
Alignment:
| Q |
351 |
cgtggaggtaatatcacacatcatgaatacattcaagttggaaaaggaagggatgttgggttgaatcaaatatcaatgtttgaagc |
436 |
Q |
| |
|
|||| ||| ||| |||| |||||||| ||||| |||||||| ||||||||||| || || | || || ||||||||||||||||| |
|
|
| T |
26002355 |
cgtgaaggaaatgtcactcatcatgagtacatacaagttggtaaaggaagggacgtcggtcttaaccagatatcaatgtttgaagc |
26002270 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 12 - 443
Target Start/End: Original strand, 30120798 - 30121229
Alignment:
| Q |
12 |
atgaaccaggacaactactttgaggaggcacttaaagtacgaaatctcttggaagaattcaagcattactatggtattcgaaaaccaactattttgggag |
111 |
Q |
| |
|
||||| ||||| |||||||||||||| ||||| || | |||||||| | ||||| | | | |||||| ||| | || |||||||| ||||| || | |
|
|
| T |
30120798 |
atgaatcaggataactactttgaggaagcactcaagatgagaaatctccttgaagagtatagacgttactacggtgtccggaaaccaacaattttaggtg |
30120897 |
T |
|
| Q |
112 |
tgagggaacatatatttacaggtttcgtttcctctcttgcttggttcatgtcagctcaggaatcaagttttgtcaccttagggcagagggttttggcaaa |
211 |
Q |
| |
|
| |||||||| || || || || | ||| ||||||||||| |||||||||||||| ||||| ||||||| |||||| |||| ||||||||||||||||| |
|
|
| T |
30120898 |
tcagggaacacattttcactggctccgtgtcctctcttgcctggttcatgtcagcccaggagacaagtttcgtcaccctaggacagagggttttggcaaa |
30120997 |
T |
|
| Q |
212 |
ccctttgaaaattcgaatgcattatggccatcctgatgtgtttgacaggttttggtttataactagaggtggtatcagtaaagcttctagagtgatcaac |
311 |
Q |
| |
|
||||||||| |||||||||||||||| ||||| ||||||||||||||||||||||| ||||| ||||||||||||| |||||||| |||||||||||| |
|
|
| T |
30120998 |
tcctttgaaagttcgaatgcattatggtcatccagatgtgtttgacaggttttggttcttaactcgaggtggtatcagcaaagcttccagagtgatcaac |
30121097 |
T |
|
| Q |
312 |
ataagcgaggacatttttgccggttttaactgtactattcgtggaggtaatatcacacatcatgaatacattcaagttggaaaaggaagggatgttgggt |
411 |
Q |
| |
|
|||||||||||||| ||||| || || || |||||| |||||||||||||| |||| || |||||||||||||| |||||||| |||||||||||||| |
|
|
| T |
30121098 |
ataagcgaggacatatttgctgggttcaattgtactcttcgtggaggtaatgtcactcaccatgaatacattcaggttggaaagggaagggatgttggtc |
30121197 |
T |
|
| Q |
412 |
tgaatcaaatatcaatgtttgaagccaaggtt |
443 |
Q |
| |
|
|||||||| ||||||||||||||||||||||| |
|
|
| T |
30121198 |
tgaatcaagtatcaatgtttgaagccaaggtt |
30121229 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 360 - 418
Target Start/End: Complemental strand, 43955900 - 43955842
Alignment:
| Q |
360 |
aatatcacacatcatgaatacattcaagttggaaaaggaagggatgttgggttgaatca |
418 |
Q |
| |
|
||||| || |||||||||||||| ||||||||||| || || ||||||||| ||||||| |
|
|
| T |
43955900 |
aatattactcatcatgaatacatccaagttggaaagggtagagatgttgggatgaatca |
43955842 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University