View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17886_low_1 (Length: 675)
Name: NF17886_low_1
Description: NF17886
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17886_low_1 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 580; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 580; E-Value: 0
Query Start/End: Original strand, 18 - 654
Target Start/End: Original strand, 40749969 - 40750596
Alignment:
| Q |
18 |
atcatctcaaggacttcaaaatcttcaacagtttagtccacatgcaggatttcatcatgagcaaagaccaaacttgtcactgtggttgaaccaagaaaat |
117 |
Q |
| |
|
|||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
40749969 |
atcatctcaaggacttcaaaatattcaacaatttagtccacatgcaggatttcatcatgagcaaagaccaaatttgtcactgtggttgaaccaagaaaat |
40750068 |
T |
|
| Q |
118 |
caacagattaatcatcattcatattcacttgatcatgtttcatcaggtttttccgatgttatacaaatggctcaaactaatactccaatgtcagctactg |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40750069 |
caacagattaatcatcattcatattcacttgatcatgtttcatcaggtttttccgatgttatacaaatggctcaaactaatactccaatgtcagctactg |
40750168 |
T |
|
| Q |
218 |
cacttcttcagaaagcagctcaaataggttcaacaagaagcagtactaatccttccatttttagtggaagttttggtgtaatgagttcatcctctacaca |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40750169 |
cacttcttcagaaagcagctcaaataggttcaacaagaagcagtactaatccttccatatttagtggaagttttggtgtaatgagttcatcctctacaca |
40750268 |
T |
|
| Q |
318 |
aacaacgagtttaaacaaaaaccatgatgaggttaatatggtcattaatcagaaaatgaagcagcatgagaattttgatccaagtagtagtagaagtgca |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40750269 |
aacaacgagtttaaacaaaaaccatgatgaggttaatatggtcattaatcagaaaatgaagcagcatgagaattttgatccaagtagtagtagaagtgca |
40750368 |
T |
|
| Q |
418 |
actatggttggtaattctagtgggtttagagattttcttggagtgagtaaccatcaatttctacctcaagagcttgcaaagtttgcttccataaattcac |
517 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40750369 |
actatggttggtaattctagtgggtttagagattttcttggagtgagtaaccatcaatttctacctcaagagcttgcaaagtttgcttccataaattcaa |
40750468 |
T |
|
| Q |
518 |
cgatgatgagtttaaatcaattcaatgctgggtgcatcaatgaaaattaattagtccttaattaagtgttgactataaattaattgatatttttggaact |
617 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
40750469 |
cgatgatgagtttaaatcaattcaatgctgggtgcatcaatgaaaattaattagtccttaattaagtgttgacta-----taattgatatttttggaact |
40750563 |
T |
|
| Q |
618 |
gcatgtgaatagatagataatgtttgtgatagtaatg |
654 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||| |
|
|
| T |
40750564 |
gcatgtga----atagataatgtttgtgatagtaatg |
40750596 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 202 - 265
Target Start/End: Complemental strand, 28495353 - 28495290
Alignment:
| Q |
202 |
ccaatgtcagctactgcacttcttcagaaagcagctcaaataggttcaacaagaagcagtacta |
265 |
Q |
| |
|
||||||||||||||||| ||||| || |||||||||||||| |||||||| ||||||| ||||| |
|
|
| T |
28495353 |
ccaatgtcagctactgctcttctgcaaaaagcagctcaaatgggttcaactagaagcaatacta |
28495290 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 203 - 251
Target Start/End: Complemental strand, 50785528 - 50785480
Alignment:
| Q |
203 |
caatgtcagctactgcacttcttcagaaagcagctcaaataggttcaac |
251 |
Q |
| |
|
|||||||||| |||||||||||||||||||| |||||||| ||| |||| |
|
|
| T |
50785528 |
caatgtcagcaactgcacttcttcagaaagctgctcaaatgggtgcaac |
50785480 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University