View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17886_low_10 (Length: 408)
Name: NF17886_low_10
Description: NF17886
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17886_low_10 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 349; Significance: 0; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 18 - 402
Target Start/End: Original strand, 31889397 - 31889781
Alignment:
| Q |
18 |
agtattttctctagcaggcctaaagcttttgctgcagattatatgacatatggtaaaaagggcataattttcaccgagtatggcaactattggcgcaata |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
31889397 |
agtattttctctagcaggcctaaagcttttgctgcagattatatgacatatggtaaaaagggcataattttcaccgagtatggcgactattggcgcaata |
31889496 |
T |
|
| Q |
118 |
tgaggaaattgtgtaccgttcaactattgcattcttcgaaagttgagatgtttgctcctttgagaaaggaagaggttggattgttggttaagtcactaag |
217 |
Q |
| |
|
||||||||||||||||| ||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31889497 |
tgaggaaattgtgtaccattcaattattgcattcttcaaaagttgagatgtttgctcctttgagaaaggaagaggttggattgttggttaagtcactaag |
31889596 |
T |
|
| Q |
218 |
aaaatcagctacattacatgaggttgttaatgttagcaagattgtggctgagcttatagagaatatcacttgtaaaatgatattgggacgaagcaaagat |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31889597 |
aaaatcagctacattacatgaggttgttaatgttagcaaggttgtggctgagcttattgagaatatcacttgtaaaatgatattgggacgaagcaaagat |
31889696 |
T |
|
| Q |
318 |
gataggttcgacttaaaggggcttgttcacaaggcgatgttattgactggaaaatttaatctctctgattatctacctttgctac |
402 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
31889697 |
gataggttcgacttaaagggtattgttcacaaggcgatgttattgactggaaaatttaatctctctgattatctaccttggctac |
31889781 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 18 - 402
Target Start/End: Complemental strand, 31867703 - 31867321
Alignment:
| Q |
18 |
agtattttctctagcaggcctaaagcttttgctgcagattatatgacatatggtaaaaagggcataattttcaccgagtatggcaactattggcgcaata |
117 |
Q |
| |
|
|||||||||||||| | || ||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||| ||||||||||||||| |
|
|
| T |
31867703 |
agtattttctctagtacacccaaagcttttgctgcagattatatgacatatggtaaaaagggaataatttttaccgagtatggcgactattggcgcaata |
31867604 |
T |
|
| Q |
118 |
tgaggaaattgtgtaccgttcaactattgcattcttcgaaagttgagatgtttgctcctttgagaaaggaagaggttggattgttggttaagtcactaag |
217 |
Q |
| |
|
||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
31867603 |
tgaggaaattgtgtagcgttcaattattgcattcttcgaaagttgagatgtttgctcctttgagaaaggaagaagttggattgttggttaagtcactaag |
31867504 |
T |
|
| Q |
218 |
aaaatcagctacattacatgaggttgttaatgttagcaagattgtggctgagcttatagagaatatcacttgtaaaatgatattgggacgaagcaaagat |
317 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31867503 |
aaattcagctacattacatgaggttgttaatgttagcaaggttgtagctgagcttatagagaatatcacttgtaaaatgatattgggacgaagcaaagat |
31867404 |
T |
|
| Q |
318 |
gataggttcgacttaaaggggcttgttcac-aaggcgatgttattgactggaaaatttaatctctctgattatctacctttgctac |
402 |
Q |
| |
|
||| |||||||||||||||||||||||| | |||||||||||||||||||||||||||||| |||||||||||||||| ||||| |
|
|
| T |
31867403 |
gat---ttcgacttaaaggggcttgttcacgagggcgatgttattgactggaaaatttaatctgtctgattatctaccttggctac |
31867321 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 306 - 402
Target Start/End: Original strand, 31892497 - 31892593
Alignment:
| Q |
306 |
cgaagcaaagatgataggttcgacttaaaggggcttgttcacaaggcgatgttattgactggaaaatttaatctctctgattatctacctttgctac |
402 |
Q |
| |
|
|||||| ||||||| ||||||||||||||||||||||||||| |||| ||||||||||| |||||||||||||| ||||| |||||||||| ||||| |
|
|
| T |
31892497 |
cgaagcgaagatgacaggttcgacttaaaggggcttgttcacgaggcaatgttattgaccggaaaatttaatctgtctgactatctaccttggctac |
31892593 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University