View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17886_low_11 (Length: 387)

Name: NF17886_low_11
Description: NF17886
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17886_low_11
NF17886_low_11
[»] chr8 (15 HSPs)
chr8 (17-319)||(43908521-43908823)
chr8 (260-318)||(14482126-14482181)
chr8 (149-197)||(34770937-34770985)
chr8 (259-288)||(9956902-9956931)
chr8 (259-288)||(26215447-26215476)
chr8 (260-319)||(29699177-29699233)
chr8 (259-288)||(32976368-32976397)
chr8 (260-327)||(34563165-34563229)
chr8 (260-288)||(8799356-8799384)
chr8 (260-288)||(11119090-11119118)
chr8 (260-288)||(26820150-26820178)
chr8 (149-197)||(29169889-29169937)
chr8 (260-288)||(39392752-39392780)
chr8 (260-288)||(40728509-40728537)
chr8 (260-288)||(42597352-42597380)
[»] chr5 (18 HSPs)
chr5 (296-373)||(3111158-3111235)
chr5 (296-373)||(3117654-3117731)
chr5 (146-182)||(1084089-1084125)
chr5 (259-288)||(7853609-7853638)
chr5 (259-288)||(10363701-10363730)
chr5 (259-287)||(6593252-6593280)
chr5 (260-288)||(7096218-7096246)
chr5 (260-288)||(10303752-10303780)
chr5 (260-288)||(12407752-12407780)
chr5 (260-288)||(14295457-14295485)
chr5 (259-287)||(27106013-27106041)
chr5 (260-288)||(28586857-28586885)
chr5 (260-288)||(29117021-29117049)
chr5 (260-288)||(29590831-29590859)
chr5 (260-288)||(34690825-34690853)
chr5 (260-288)||(35095874-35095902)
chr5 (260-288)||(35135753-35135781)
chr5 (260-288)||(37063165-37063193)
[»] scaffold0590 (1 HSPs)
scaffold0590 (260-327)||(1165-1229)
[»] scaffold0275 (1 HSPs)
scaffold0275 (260-327)||(2746-2810)
[»] chr6 (10 HSPs)
chr6 (260-321)||(740956-741017)
chr6 (146-288)||(10031709-10031852)
chr6 (146-197)||(32171333-32171384)
chr6 (296-326)||(18264247-18264277)
chr6 (259-288)||(507171-507200)
chr6 (259-288)||(1402947-1402976)
chr6 (260-288)||(5328925-5328953)
chr6 (260-288)||(24836290-24836318)
chr6 (260-288)||(30865433-30865461)
chr6 (144-252)||(34939758-34939866)
[»] chr4 (18 HSPs)
chr4 (146-263)||(2996576-2996693)
chr4 (158-259)||(23819096-23819197)
chr4 (150-197)||(4071947-4071994)
chr4 (262-318)||(30207663-30207716)
chr4 (260-321)||(30024621-30024679)
chr4 (148-182)||(2852449-2852483)
chr4 (150-196)||(25434366-25434412)
chr4 (148-178)||(46860006-46860036)
chr4 (147-196)||(1408271-1408320)
chr4 (150-219)||(6428065-6428134)
chr4 (259-288)||(17884019-17884048)
chr4 (259-288)||(47800581-47800610)
chr4 (260-288)||(4071833-4071861)
chr4 (260-288)||(6364100-6364128)
chr4 (260-318)||(19422342-19422397)
chr4 (260-288)||(20936093-20936121)
chr4 (260-288)||(24929444-24929472)
chr4 (260-288)||(51044550-51044578)
[»] chr7 (11 HSPs)
chr7 (146-217)||(33894676-33894747)
chr7 (260-318)||(5373149-5373204)
chr7 (149-197)||(8094375-8094423)
chr7 (296-327)||(45078208-45078239)
chr7 (149-178)||(7453350-7453379)
chr7 (259-288)||(43152992-43153021)
chr7 (260-288)||(2999142-2999170)
chr7 (260-288)||(28178920-28178948)
chr7 (260-288)||(39591558-39591586)
chr7 (149-197)||(40009545-40009593)
chr7 (260-288)||(42656466-42656494)
[»] chr3 (16 HSPs)
chr3 (262-327)||(16790181-16790243)
chr3 (146-192)||(22667477-22667523)
chr3 (146-192)||(22724116-22724162)
chr3 (263-313)||(20173982-20174029)
chr3 (149-259)||(37273141-37273251)
chr3 (259-288)||(2128341-2128370)
chr3 (259-288)||(10101566-10101595)
chr3 (259-288)||(10212491-10212520)
chr3 (259-288)||(15304437-15304466)
chr3 (259-319)||(16272676-16272736)
chr3 (260-288)||(905061-905089)
chr3 (260-288)||(1395622-1395650)
chr3 (260-288)||(26990685-26990713)
chr3 (260-288)||(33882979-33883007)
chr3 (260-288)||(49587007-49587035)
chr3 (260-288)||(54775079-54775107)
[»] chr2 (14 HSPs)
chr2 (259-320)||(3673729-3673787)
chr2 (149-252)||(12313126-12313229)
chr2 (146-197)||(40943982-40944033)
chr2 (149-217)||(787381-787449)
chr2 (259-320)||(18962128-18962186)
chr2 (260-327)||(28803597-28803661)
chr2 (260-327)||(31461353-31461417)
chr2 (259-288)||(39567854-39567883)
chr2 (150-199)||(43529812-43529861)
chr2 (149-197)||(1318305-1318353)
chr2 (260-288)||(1939423-1939451)
chr2 (260-288)||(17952792-17952820)
chr2 (254-286)||(30990454-30990486)
chr2 (260-288)||(32098399-32098427)
[»] chr1 (16 HSPs)
chr1 (146-217)||(4868449-4868519)
chr1 (149-196)||(43371844-43371891)
chr1 (148-217)||(32515393-32515462)
chr1 (169-259)||(27140485-27140575)
chr1 (259-288)||(4549817-4549846)
chr1 (259-288)||(4700156-4700185)
chr1 (260-327)||(45234112-45234176)
chr1 (259-288)||(49557092-49557121)
chr1 (267-321)||(4202227-4202278)
chr1 (260-318)||(7274030-7274085)
chr1 (260-288)||(14737796-14737824)
chr1 (260-288)||(15360845-15360873)
chr1 (260-288)||(17631192-17631220)
chr1 (260-288)||(36641826-36641854)
chr1 (260-288)||(49517021-49517049)
chr1 (260-288)||(50319243-50319271)
[»] scaffold0110 (1 HSPs)
scaffold0110 (146-219)||(4173-4246)
[»] scaffold0024 (1 HSPs)
scaffold0024 (260-318)||(27500-27555)


Alignment Details
Target: chr8 (Bit Score: 287; Significance: 1e-161; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 17 - 319
Target Start/End: Original strand, 43908521 - 43908823
Alignment:
Q  17 agataatgcattcttagaaagaattagtgcacgaaacaaacgttatgaaactggtaactaacccttttataatacttagtgaattatattaacctgttta 116  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  43908521 agataatgcattcttagaaagaattagtgcacgaaacaaacgtcatgaaactggtaactaacccttttataatacttagtgaattatattagcctgttta 43908620  T
Q  117 gcttgacttatttgaatttgtctactgagtgacataagcacttgtgaaactgtttgagagagtttaagaaaacagcttatgccgtgtcaataagatgttt 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43908621 gcttgacttatttgaatttgtctactgagtgacataagcacttgtgaaactgtttgagagagtttaagaaaacagcttatgccgtgtcaataagatgttt 43908720  T
Q  217 taaccctacttccgtaacctctacaagatagcttattaaaacaactttattttatcttttgttatagaaatactaacaaatacataagcacttatatgat 316  Q
    ||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43908721 taaccctacttccataacctctacaagatagcttattgaaacaactttattttatcttttgttatagaaatactaacaaatacataagcacttatatgat 43908820  T
Q  317 aaa 319  Q
    |||    
T  43908821 aaa 43908823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 260 - 318
Target Start/End: Complemental strand, 14482181 - 14482126
Alignment:
Q  260 actttattttatcttttgttatagaaatactaacaaatacataagcacttatatgataa 318  Q
    ||||||||||||||||||||||||||||| |     |||||||||||||||||||||||    
T  14482181 actttattttatcttttgttatagaaatagt---ttatacataagcacttatatgataa 14482126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 149 - 197
Target Start/End: Complemental strand, 34770985 - 34770937
Alignment:
Q  149 cataagcacttgtgaaactgtttgagagagtttaagaaaacagcttatg 197  Q
    |||||||||||||||||||||||||||||   || ||||||||||||||    
T  34770985 cataagcacttgtgaaactgtttgagagatcctatgaaaacagcttatg 34770937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 259 - 288
Target Start/End: Original strand, 9956902 - 9956931
Alignment:
Q  259 aactttattttatcttttgttatagaaata 288  Q
    ||||||||||||||||||||||||||||||    
T  9956902 aactttattttatcttttgttatagaaata 9956931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 259 - 288
Target Start/End: Complemental strand, 26215476 - 26215447
Alignment:
Q  259 aactttattttatcttttgttatagaaata 288  Q
    ||||||||||||||||||||||||||||||    
T  26215476 aactttattttatcttttgttatagaaata 26215447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 260 - 319
Target Start/End: Complemental strand, 29699233 - 29699177
Alignment:
Q  260 actttattttatcttttgttatagaaatactaacaaatacataagcacttatatgataaa 319  Q
    |||||||||||||||||||||||||||   ||||   |||||||||| ||||||||||||    
T  29699233 actttattttatcttttgttatagaaa---taacttgtacataagcatttatatgataaa 29699177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 259 - 288
Target Start/End: Complemental strand, 32976397 - 32976368
Alignment:
Q  259 aactttattttatcttttgttatagaaata 288  Q
    ||||||||||||||||||||||||||||||    
T  32976397 aactttattttatcttttgttatagaaata 32976368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 260 - 327
Target Start/End: Complemental strand, 34563229 - 34563165
Alignment:
Q  260 actttattttatcttttgttatagaaatactaacaaatacataagcacttatatgataaacgtttatg 327  Q
    ||||||||||||| ||||| |||||||||   ||  ||| |||||||||||||||||||| |||||||    
T  34563229 actttattttatcctttgtcatagaaata---acttatatataagcacttatatgataaatgtttatg 34563165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 260 - 288
Target Start/End: Complemental strand, 8799384 - 8799356
Alignment:
Q  260 actttattttatcttttgttatagaaata 288  Q
    |||||||||||||||||||||||||||||    
T  8799384 actttattttatcttttgttatagaaata 8799356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 260 - 288
Target Start/End: Original strand, 11119090 - 11119118
Alignment:
Q  260 actttattttatcttttgttatagaaata 288  Q
    |||||||||||||||||||||||||||||    
T  11119090 actttattttatcttttgttatagaaata 11119118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 260 - 288
Target Start/End: Complemental strand, 26820178 - 26820150
Alignment:
Q  260 actttattttatcttttgttatagaaata 288  Q
    |||||||||||||||||||||||||||||    
T  26820178 actttattttatcttttgttatagaaata 26820150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 149 - 197
Target Start/End: Original strand, 29169889 - 29169937
Alignment:
Q  149 cataagcacttgtgaaactgtttgagagagtttaagaaaacagcttatg 197  Q
    ||||||||||||||||| |||||| ||||| ||| ||||||||| ||||    
T  29169889 cataagcacttgtgaaattgtttgggagagcttatgaaaacagcatatg 29169937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 260 - 288
Target Start/End: Original strand, 39392752 - 39392780
Alignment:
Q  260 actttattttatcttttgttatagaaata 288  Q
    |||||||||||||||||||||||||||||    
T  39392752 actttattttatcttttgttatagaaata 39392780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 260 - 288
Target Start/End: Original strand, 40728509 - 40728537
Alignment:
Q  260 actttattttatcttttgttatagaaata 288  Q
    |||||||||||||||||||||||||||||    
T  40728509 actttattttatcttttgttatagaaata 40728537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 260 - 288
Target Start/End: Complemental strand, 42597380 - 42597352
Alignment:
Q  260 actttattttatcttttgttatagaaata 288  Q
    |||||||||||||||||||||||||||||    
T  42597380 actttattttatcttttgttatagaaata 42597352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 78; Significance: 3e-36; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 296 - 373
Target Start/End: Original strand, 3111158 - 3111235
Alignment:
Q  296 atacataagcacttatatgataaacgtttatggcttgttatagaagtgcttctgaatccataaatcttagtatcttac 373  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3111158 atacataagcacttatatgataaacgtttatggcttgttatagaagtgcttctgaatccataaatcttagtatcttac 3111235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 296 - 373
Target Start/End: Original strand, 3117654 - 3117731
Alignment:
Q  296 atacataagcacttatatgataaacgtttatggcttgttatagaagtgcttctgaatccataaatcttagtatcttac 373  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3117654 atacataagcacttatatgataaacgtttatggcttgttatagaagtgcttctgaatccataaatcttagtatcttac 3117731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 146 - 182
Target Start/End: Original strand, 1084089 - 1084125
Alignment:
Q  146 tgacataagcacttgtgaaactgtttgagagagttta 182  Q
    |||||||||||||||||||||||||||||||||||||    
T  1084089 tgacataagcacttgtgaaactgtttgagagagttta 1084125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 259 - 288
Target Start/End: Complemental strand, 7853638 - 7853609
Alignment:
Q  259 aactttattttatcttttgttatagaaata 288  Q
    ||||||||||||||||||||||||||||||    
T  7853638 aactttattttatcttttgttatagaaata 7853609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 259 - 288
Target Start/End: Complemental strand, 10363730 - 10363701
Alignment:
Q  259 aactttattttatcttttgttatagaaata 288  Q
    ||||||||||||||||||||||||||||||    
T  10363730 aactttattttatcttttgttatagaaata 10363701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 259 - 287
Target Start/End: Complemental strand, 6593280 - 6593252
Alignment:
Q  259 aactttattttatcttttgttatagaaat 287  Q
    |||||||||||||||||||||||||||||    
T  6593280 aactttattttatcttttgttatagaaat 6593252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 260 - 288
Target Start/End: Original strand, 7096218 - 7096246
Alignment:
Q  260 actttattttatcttttgttatagaaata 288  Q
    |||||||||||||||||||||||||||||    
T  7096218 actttattttatcttttgttatagaaata 7096246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 260 - 288
Target Start/End: Complemental strand, 10303780 - 10303752
Alignment:
Q  260 actttattttatcttttgttatagaaata 288  Q
    |||||||||||||||||||||||||||||    
T  10303780 actttattttatcttttgttatagaaata 10303752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 260 - 288
Target Start/End: Original strand, 12407752 - 12407780
Alignment:
Q  260 actttattttatcttttgttatagaaata 288  Q
    |||||||||||||||||||||||||||||    
T  12407752 actttattttatcttttgttatagaaata 12407780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 260 - 288
Target Start/End: Complemental strand, 14295485 - 14295457
Alignment:
Q  260 actttattttatcttttgttatagaaata 288  Q
    |||||||||||||||||||||||||||||    
T  14295485 actttattttatcttttgttatagaaata 14295457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 259 - 287
Target Start/End: Original strand, 27106013 - 27106041
Alignment:
Q  259 aactttattttatcttttgttatagaaat 287  Q
    |||||||||||||||||||||||||||||    
T  27106013 aactttattttatcttttgttatagaaat 27106041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 260 - 288
Target Start/End: Original strand, 28586857 - 28586885
Alignment:
Q  260 actttattttatcttttgttatagaaata 288  Q
    |||||||||||||||||||||||||||||    
T  28586857 actttattttatcttttgttatagaaata 28586885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 260 - 288
Target Start/End: Original strand, 29117021 - 29117049
Alignment:
Q  260 actttattttatcttttgttatagaaata 288  Q
    |||||||||||||||||||||||||||||    
T  29117021 actttattttatcttttgttatagaaata 29117049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 260 - 288
Target Start/End: Original strand, 29590831 - 29590859
Alignment:
Q  260 actttattttatcttttgttatagaaata 288  Q
    |||||||||||||||||||||||||||||    
T  29590831 actttattttatcttttgttatagaaata 29590859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 260 - 288
Target Start/End: Complemental strand, 34690853 - 34690825
Alignment:
Q  260 actttattttatcttttgttatagaaata 288  Q
    |||||||||||||||||||||||||||||    
T  34690853 actttattttatcttttgttatagaaata 34690825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 260 - 288
Target Start/End: Original strand, 35095874 - 35095902
Alignment:
Q  260 actttattttatcttttgttatagaaata 288  Q
    |||||||||||||||||||||||||||||    
T  35095874 actttattttatcttttgttatagaaata 35095902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 260 - 288
Target Start/End: Original strand, 35135753 - 35135781
Alignment:
Q  260 actttattttatcttttgttatagaaata 288  Q
    |||||||||||||||||||||||||||||    
T  35135753 actttattttatcttttgttatagaaata 35135781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 260 - 288
Target Start/End: Original strand, 37063165 - 37063193
Alignment:
Q  260 actttattttatcttttgttatagaaata 288  Q
    |||||||||||||||||||||||||||||    
T  37063165 actttattttatcttttgttatagaaata 37063193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0590 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0590
Description:

Target: scaffold0590; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 260 - 327
Target Start/End: Original strand, 1165 - 1229
Alignment:
Q  260 actttattttatcttttgttatagaaatactaacaaatacataagcacttatatgataaacgtttatg 327  Q
    |||||||||||||||||||||||||||   || |  |||||||||||||||||||||| |||||||||    
T  1165 actttattttatcttttgttatagaaa---tagcttatacataagcacttatatgatagacgtttatg 1229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0275 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0275
Description:

Target: scaffold0275; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 260 - 327
Target Start/End: Complemental strand, 2810 - 2746
Alignment:
Q  260 actttattttatcttttgttatagaaatactaacaaatacataagcacttatatgataaacgtttatg 327  Q
    |||||||||||||||||||||||||||   || |  |||||||||||||||||||||| |||||||||    
T  2810 actttattttatcttttgttatagaaa---tagcttatacataagcacttatatgatagacgtttatg 2746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 260 - 321
Target Start/End: Original strand, 740956 - 741017
Alignment:
Q  260 actttattttatcttttgttatagaaatactaacaaatacataagcacttatatgataaacg 321  Q
    ||||||||||||||||||||||||||| | || |  ||||||||||| ||||||||||||||    
T  740956 actttattttatcttttgttatagaaaaaatagcttatacataagcatttatatgataaacg 741017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 146 - 288
Target Start/End: Complemental strand, 10031852 - 10031709
Alignment:
Q  146 tgacataagcacttgtgaaactgtttgagagagtttaagaaaacagcttatgccgtgtcaataagatgttttaaccctacttccgtaacctctacaagat 245  Q
    |||||||||||||||||| ||||||||| ||||  || |||| || |||| | | | || ||||| |||||| | | || |||| ||| |||| |||||     
T  10031852 tgacataagcacttgtgagactgtttgaaagagcctatgaaaccaacttacgacatatccataagttgttttcatcttatttccttaagctctccaagac 10031753  T
Q  246 agcttattaaaacaacttt-attttatcttttgttatagaaata 288  Q
    ||||||| ||||||| ||| | ||||| ||||||||||||||||    
T  10031752 agcttataaaaacaattttaactttattttttgttatagaaata 10031709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 146 - 197
Target Start/End: Original strand, 32171333 - 32171384
Alignment:
Q  146 tgacataagcacttgtgaaactgtttgagagagtttaagaaaacagcttatg 197  Q
    ||||||||||||||| || |||||||||||||| ||| ||||||||||||||    
T  32171333 tgacataagcacttgcgagactgtttgagagagcttatgaaaacagcttatg 32171384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 296 - 326
Target Start/End: Complemental strand, 18264277 - 18264247
Alignment:
Q  296 atacataagcacttatatgataaacgtttat 326  Q
    |||||||||||||||||||||||||||||||    
T  18264277 atacataagcacttatatgataaacgtttat 18264247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 259 - 288
Target Start/End: Complemental strand, 507200 - 507171
Alignment:
Q  259 aactttattttatcttttgttatagaaata 288  Q
    ||||||||||||||||||||||||||||||    
T  507200 aactttattttatcttttgttatagaaata 507171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 259 - 288
Target Start/End: Complemental strand, 1402976 - 1402947
Alignment:
Q  259 aactttattttatcttttgttatagaaata 288  Q
    ||||||||||||||||||||||||||||||    
T  1402976 aactttattttatcttttgttatagaaata 1402947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 260 - 288
Target Start/End: Complemental strand, 5328953 - 5328925
Alignment:
Q  260 actttattttatcttttgttatagaaata 288  Q
    |||||||||||||||||||||||||||||    
T  5328953 actttattttatcttttgttatagaaata 5328925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 260 - 288
Target Start/End: Original strand, 24836290 - 24836318
Alignment:
Q  260 actttattttatcttttgttatagaaata 288  Q
    |||||||||||||||||||||||||||||    
T  24836290 actttattttatcttttgttatagaaata 24836318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 260 - 288
Target Start/End: Complemental strand, 30865461 - 30865433
Alignment:
Q  260 actttattttatcttttgttatagaaata 288  Q
    |||||||||||||||||||||||||||||    
T  30865461 actttattttatcttttgttatagaaata 30865433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 144 - 252
Target Start/End: Complemental strand, 34939866 - 34939758
Alignment:
Q  144 agtgacataagcacttgtgaaactgtttgagagagtttaagaaaacagcttatgccgtgtcaataagatgttttaaccctacttccgtaacctctacaag 243  Q
    |||||||||| || ||||||||||||||  ||||| ||| | |||||||||||| | |||| ||||  |||||| | | || |||| ||| |||| || |    
T  34939866 agtgacataaacatttgtgaaactgttttggagagcttacggaaacagcttatgacatgtccataaattgttttcagcttatttccataaactctccagg 34939767  T
Q  244 atagcttat 252  Q
    |||||||||    
T  34939766 atagcttat 34939758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 146 - 263
Target Start/End: Complemental strand, 2996693 - 2996576
Alignment:
Q  146 tgacataagcacttgtgaaactgtttgagagagtttaagaaaacagcttatgccgtgtcaataagatgttttaaccctacttccgtaacctctacaagat 245  Q
    |||||||||||||| ||| |||||||||||||| ||| ||||||| |||||| | |||| ||||| | |||| | | || || | ||  |||| ||||||    
T  2996693 tgacataagcacttttgagactgtttgagagagcttatgaaaacaacttatgacatgtccataagcttttttcaacttattttcatacgctctccaagat 2996594  T
Q  246 agcttattaaaacaactt 263  Q
    ||||||| ||||||||||    
T  2996593 agcttatgaaaacaactt 2996576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 158 - 259
Target Start/End: Complemental strand, 23819197 - 23819096
Alignment:
Q  158 ttgtgaaactgtttgagagagtttaagaaaacagcttatgccgtgtcaataagatgttttaaccctacttccgtaacctctacaagatagcttattaaaa 257  Q
    |||||| ||||||||  ||||||||||||||||||||||| | |||| ||||| |||||| | | || |||  ||| |||| ||||||||||||| ||||    
T  23819197 ttgtgagactgtttggaagagtttaagaaaacagcttatgacatgtccataagttgttttcatcttatttctataagctcttcaagatagcttatgaaaa 23819098  T
Q  258 ca 259  Q
    ||    
T  23819097 ca 23819096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 150 - 197
Target Start/End: Complemental strand, 4071994 - 4071947
Alignment:
Q  150 ataagcacttgtgaaactgtttgagagagtttaagaaaacagcttatg 197  Q
    |||||||||||||| |||||||||||||| ||| ||||||||||||||    
T  4071994 ataagcacttgtgagactgtttgagagagcttatgaaaacagcttatg 4071947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 262 - 318
Target Start/End: Original strand, 30207663 - 30207716
Alignment:
Q  262 tttattttatcttttgttatagaaatactaacaaatacataagcacttatatgataa 318  Q
    |||||||||| |||||||||||||   |||||| |||||||||||||||||||||||    
T  30207663 tttattttattttttgttatagaa---ctaacatatacataagcacttatatgataa 30207716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 260 - 321
Target Start/End: Complemental strand, 30024679 - 30024621
Alignment:
Q  260 actttattttatcttttgttatagaaatactaacaaatacataagcacttatatgataaacg 321  Q
    |||||||||||||||||||||||||||||   ||  || |||||| ||||||||||||||||    
T  30024679 actttattttatcttttgttatagaaata---acttatgcataagtacttatatgataaacg 30024621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 148 - 182
Target Start/End: Complemental strand, 2852483 - 2852449
Alignment:
Q  148 acataagcacttgtgaaactgtttgagagagttta 182  Q
    |||||||||||||||| ||||||||||||||||||    
T  2852483 acataagcacttgtgacactgtttgagagagttta 2852449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 150 - 196
Target Start/End: Original strand, 25434366 - 25434412
Alignment:
Q  150 ataagcacttgtgaaactgtttgagagagtttaagaaaacagcttat 196  Q
    ||||||||||||||||||||||  ||||| ||| |||||||||||||    
T  25434366 ataagcacttgtgaaactgtttaggagagcttaggaaaacagcttat 25434412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 148 - 178
Target Start/End: Complemental strand, 46860036 - 46860006
Alignment:
Q  148 acataagcacttgtgaaactgtttgagagag 178  Q
    |||||||||||||||||||||||||||||||    
T  46860036 acataagcacttgtgaaactgtttgagagag 46860006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 147 - 196
Target Start/End: Original strand, 1408271 - 1408320
Alignment:
Q  147 gacataagcacttgtgaaactgtttgagagagtttaagaaaacagcttat 196  Q
    ||||| ||||||| ||| ||||||||||||| |||| |||||||||||||    
T  1408271 gacattagcacttatgagactgtttgagagaatttatgaaaacagcttat 1408320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 150 - 219
Target Start/End: Complemental strand, 6428134 - 6428065
Alignment:
Q  150 ataagcacttgtgaaactgtttgagagagtttaagaaaacagcttatgccgtgtcaataagatgttttaa 219  Q
    |||||||||||||| || ||||||||||| ||| ||||||| |||||| | |||| ||||| || |||||    
T  6428134 ataagcacttgtgagacagtttgagagagattatgaaaacaacttatgacatgtccataagttgatttaa 6428065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 259 - 288
Target Start/End: Complemental strand, 17884048 - 17884019
Alignment:
Q  259 aactttattttatcttttgttatagaaata 288  Q
    ||||||||||||||||||||||||||||||    
T  17884048 aactttattttatcttttgttatagaaata 17884019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 259 - 288
Target Start/End: Complemental strand, 47800610 - 47800581
Alignment:
Q  259 aactttattttatcttttgttatagaaata 288  Q
    ||||||||||||||||||||||||||||||    
T  47800610 aactttattttatcttttgttatagaaata 47800581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 260 - 288
Target Start/End: Complemental strand, 4071861 - 4071833
Alignment:
Q  260 actttattttatcttttgttatagaaata 288  Q
    |||||||||||||||||||||||||||||    
T  4071861 actttattttatcttttgttatagaaata 4071833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 260 - 288
Target Start/End: Complemental strand, 6364128 - 6364100
Alignment:
Q  260 actttattttatcttttgttatagaaata 288  Q
    |||||||||||||||||||||||||||||    
T  6364128 actttattttatcttttgttatagaaata 6364100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 260 - 318
Target Start/End: Complemental strand, 19422397 - 19422342
Alignment:
Q  260 actttattttatcttttgttatagaaatactaacaaatacataagcacttatatgataa 318  Q
    |||||||| ||||||||||||||||||   ||||  ||||||||||| |||||||||||    
T  19422397 actttattatatcttttgttatagaaa---taacttatacataagcatttatatgataa 19422342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 260 - 288
Target Start/End: Original strand, 20936093 - 20936121
Alignment:
Q  260 actttattttatcttttgttatagaaata 288  Q
    |||||||||||||||||||||||||||||    
T  20936093 actttattttatcttttgttatagaaata 20936121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 260 - 288
Target Start/End: Complemental strand, 24929472 - 24929444
Alignment:
Q  260 actttattttatcttttgttatagaaata 288  Q
    |||||||||||||||||||||||||||||    
T  24929472 actttattttatcttttgttatagaaata 24929444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 260 - 288
Target Start/End: Original strand, 51044550 - 51044578
Alignment:
Q  260 actttattttatcttttgttatagaaata 288  Q
    |||||||||||||||||||||||||||||    
T  51044550 actttattttatcttttgttatagaaata 51044578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000004; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 146 - 217
Target Start/End: Complemental strand, 33894747 - 33894676
Alignment:
Q  146 tgacataagcacttgtgaaactgtttgagagagtttaagaaaacagcttatgccgtgtcaataagatgtttt 217  Q
    |||||||||||||||||| |||||||| ||||| ||| ||||||||| |||| | |||| ||||| ||||||    
T  33894747 tgacataagcacttgtgagactgtttgtgagagcttatgaaaacagcatatgacatgtccataagttgtttt 33894676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 260 - 318
Target Start/End: Complemental strand, 5373204 - 5373149
Alignment:
Q  260 actttattttatcttttgttatagaaatactaacaaatacataagcacttatatgataa 318  Q
    |||||||||||||||||||||||||||   || || ||||||||||||||| |||||||    
T  5373204 actttattttatcttttgttatagaaa---tagcatatacataagcacttacatgataa 5373149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 149 - 197
Target Start/End: Complemental strand, 8094423 - 8094375
Alignment:
Q  149 cataagcacttgtgaaactgtttgagagagtttaagaaaacagcttatg 197  Q
    ||||||||||||||| ||| ||||||||| |||| ||||||||||||||    
T  8094423 cataagcacttgtgagactatttgagagattttatgaaaacagcttatg 8094375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 296 - 327
Target Start/End: Complemental strand, 45078239 - 45078208
Alignment:
Q  296 atacataagcacttatatgataaacgtttatg 327  Q
    ||||||||||||||||||||||||||||||||    
T  45078239 atacataagcacttatatgataaacgtttatg 45078208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 149 - 178
Target Start/End: Original strand, 7453350 - 7453379
Alignment:
Q  149 cataagcacttgtgaaactgtttgagagag 178  Q
    ||||||||||||||||||||||||||||||    
T  7453350 cataagcacttgtgaaactgtttgagagag 7453379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 259 - 288
Target Start/End: Original strand, 43152992 - 43153021
Alignment:
Q  259 aactttattttatcttttgttatagaaata 288  Q
    ||||||||||||||||||||||||||||||    
T  43152992 aactttattttatcttttgttatagaaata 43153021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 260 - 288
Target Start/End: Complemental strand, 2999170 - 2999142
Alignment:
Q  260 actttattttatcttttgttatagaaata 288  Q
    |||||||||||||||||||||||||||||    
T  2999170 actttattttatcttttgttatagaaata 2999142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 260 - 288
Target Start/End: Complemental strand, 28178948 - 28178920
Alignment:
Q  260 actttattttatcttttgttatagaaata 288  Q
    |||||||||||||||||||||||||||||    
T  28178948 actttattttatcttttgttatagaaata 28178920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 260 - 288
Target Start/End: Original strand, 39591558 - 39591586
Alignment:
Q  260 actttattttatcttttgttatagaaata 288  Q
    |||||||||||||||||||||||||||||    
T  39591558 actttattttatcttttgttatagaaata 39591586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 149 - 197
Target Start/End: Complemental strand, 40009593 - 40009545
Alignment:
Q  149 cataagcacttgtgaaactgtttgagagagtttaagaaaacagcttatg 197  Q
    ||||||||||||||||||||||||  ||| |||| ||||| ||||||||    
T  40009593 cataagcacttgtgaaactgtttggtagaatttatgaaaatagcttatg 40009545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 260 - 288
Target Start/End: Complemental strand, 42656494 - 42656466
Alignment:
Q  260 actttattttatcttttgttatagaaata 288  Q
    |||||||||||||||||||||||||||||    
T  42656494 actttattttatcttttgttatagaaata 42656466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000004; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 262 - 327
Target Start/End: Original strand, 16790181 - 16790243
Alignment:
Q  262 tttattttatcttttgttatagaaatactaacaaatacataagcacttatatgataaacgtttatg 327  Q
    |||||||||||||||||||||||||   ||||  ||| |||||||||||||||||||||| |||||    
T  16790181 tttattttatcttttgttatagaaa---taacttatatataagcacttatatgataaacgcttatg 16790243  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 146 - 192
Target Start/End: Complemental strand, 22667523 - 22667477
Alignment:
Q  146 tgacataagcacttgtgaaactgtttgagagagtttaagaaaacagc 192  Q
    |||||||||||||||||| |||||||||||||||||| | |||||||    
T  22667523 tgacataagcacttgtgagactgtttgagagagtttatggaaacagc 22667477  T

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Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 146 - 192
Target Start/End: Complemental strand, 22724162 - 22724116
Alignment:
Q  146 tgacataagcacttgtgaaactgtttgagagagtttaagaaaacagc 192  Q
    |||||||||||||||||| |||||||||||||||||| | |||||||    
T  22724162 tgacataagcacttgtgagactgtttgagagagtttatggaaacagc 22724116  T

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Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 263 - 313
Target Start/End: Original strand, 20173982 - 20174029
Alignment:
Q  263 ttattttatcttttgttatagaaatactaacaaatacataagcacttatat 313  Q
    ||||||||||||||||||||||||   |||| |||||||||||||||||||    
T  20173982 ttattttatcttttgttatagaaa---taactaatacataagcacttatat 20174029  T

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Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 149 - 259
Target Start/End: Complemental strand, 37273251 - 37273141
Alignment:
Q  149 cataagcacttgtgaaactgtttgagagagtttaagaaaacagcttatgccgtgtcaataagatgttttaaccctacttccgtaacctctacaagatagc 248  Q
    |||||||||| |||| |||||||| ||||| ||| | ||||| |||||| | |||| ||||| |||||| | | || |||| |||  ||| |||||||||    
T  37273251 cataagcactggtgagactgtttgggagagcttatggaaacaacttatgacatgtccataagttgttttcaacttatttccataagttctccaagatagc 37273152  T
Q  249 ttattaaaaca 259  Q
    |||| ||||||    
T  37273151 ttatgaaaaca 37273141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 259 - 288
Target Start/End: Original strand, 2128341 - 2128370
Alignment:
Q  259 aactttattttatcttttgttatagaaata 288  Q
    ||||||||||||||||||||||||||||||    
T  2128341 aactttattttatcttttgttatagaaata 2128370  T

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Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 259 - 288
Target Start/End: Original strand, 10101566 - 10101595
Alignment:
Q  259 aactttattttatcttttgttatagaaata 288  Q
    ||||||||||||||||||||||||||||||    
T  10101566 aactttattttatcttttgttatagaaata 10101595  T

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Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 259 - 288
Target Start/End: Original strand, 10212491 - 10212520
Alignment:
Q  259 aactttattttatcttttgttatagaaata 288  Q
    ||||||||||||||||||||||||||||||    
T  10212491 aactttattttatcttttgttatagaaata 10212520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 259 - 288
Target Start/End: Original strand, 15304437 - 15304466
Alignment:
Q  259 aactttattttatcttttgttatagaaata 288  Q
    ||||||||||||||||||||||||||||||    
T  15304437 aactttattttatcttttgttatagaaata 15304466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 259 - 319
Target Start/End: Complemental strand, 16272736 - 16272676
Alignment:
Q  259 aactttattttatcttttgttatagaaata-ctaacaaatacataagcacttatatgataaa 319  Q
    ||||||||||||| |||||||||| ||||| || | | ||||||||||||||||||||||||    
T  16272736 aactttattttattttttgttata-aaatagcttatatatacataagcacttatatgataaa 16272676  T

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Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 260 - 288
Target Start/End: Original strand, 905061 - 905089
Alignment:
Q  260 actttattttatcttttgttatagaaata 288  Q
    |||||||||||||||||||||||||||||    
T  905061 actttattttatcttttgttatagaaata 905089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 260 - 288
Target Start/End: Complemental strand, 1395650 - 1395622
Alignment:
Q  260 actttattttatcttttgttatagaaata 288  Q
    |||||||||||||||||||||||||||||    
T  1395650 actttattttatcttttgttatagaaata 1395622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 260 - 288
Target Start/End: Complemental strand, 26990713 - 26990685
Alignment:
Q  260 actttattttatcttttgttatagaaata 288  Q
    |||||||||||||||||||||||||||||    
T  26990713 actttattttatcttttgttatagaaata 26990685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 260 - 288
Target Start/End: Complemental strand, 33883007 - 33882979
Alignment:
Q  260 actttattttatcttttgttatagaaata 288  Q
    |||||||||||||||||||||||||||||    
T  33883007 actttattttatcttttgttatagaaata 33882979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 260 - 288
Target Start/End: Original strand, 49587007 - 49587035
Alignment:
Q  260 actttattttatcttttgttatagaaata 288  Q
    |||||||||||||||||||||||||||||    
T  49587007 actttattttatcttttgttatagaaata 49587035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 260 - 288
Target Start/End: Complemental strand, 54775107 - 54775079
Alignment:
Q  260 actttattttatcttttgttatagaaata 288  Q
    |||||||||||||||||||||||||||||    
T  54775107 actttattttatcttttgttatagaaata 54775079  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000004; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 259 - 320
Target Start/End: Complemental strand, 3673787 - 3673729
Alignment:
Q  259 aactttattttatcttttgttatagaaatactaacaaatacataagcacttatatgataaac 320  Q
    ||||||||||||| ||||||||||||||   |||| ||||||||||||||||||||| ||||    
T  3673787 aactttattttatattttgttatagaaa---taactaatacataagcacttatatgacaaac 3673729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 149 - 252
Target Start/End: Original strand, 12313126 - 12313229
Alignment:
Q  149 cataagcacttgtgaaactgtttgagagagtttaagaaaacagcttatgccgtgtcaataagatgttttaaccctacttccgtaacctctacaagatagc 248  Q
    ||||||||||||||| | |||||| |||| |||| |||||||||||||||| |||  ||||| || ||| ||| || || | ||| |||| |||||||||    
T  12313126 cataagcacttgtgagattgtttgggagaatttatgaaaacagcttatgccatgttcataagttgatttcaccttattttcataagctctccaagatagc 12313225  T
Q  249 ttat 252  Q
    ||||    
T  12313226 ttat 12313229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 146 - 197
Target Start/End: Complemental strand, 40944033 - 40943982
Alignment:
Q  146 tgacataagcacttgtgaaactgtttgagagagtttaagaaaacagcttatg 197  Q
    |||||||||||||||||||||||||||  | |||||| ||||||||||||||    
T  40944033 tgacataagcacttgtgaaactgtttggaaaagtttatgaaaacagcttatg 40943982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 149 - 217
Target Start/End: Complemental strand, 787449 - 787381
Alignment:
Q  149 cataagcacttgtgaaactgtttgagagagtttaagaaaacagcttatgccgtgtcaataagatgtttt 217  Q
    ||||||||||||||| |||||||| ||||  ||| |||||||||||||| | |||| ||||| ||||||    
T  787449 cataagcacttgtgacactgtttgtgagaacttatgaaaacagcttatgacatgtccataagctgtttt 787381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 259 - 320
Target Start/End: Original strand, 18962128 - 18962186
Alignment:
Q  259 aactttattttatcttttgttatagaaatactaacaaatacataagcacttatatgataaac 320  Q
    |||||||||||||||||||||||| |||||    | |||||||||||||||| |||||||||    
T  18962128 aactttattttatcttttgttataaaaatag---ctaatacataagcacttacatgataaac 18962186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 260 - 327
Target Start/End: Original strand, 28803597 - 28803661
Alignment:
Q  260 actttattttatcttttgttatagaaatactaacaaatacataagcacttatatgataaacgtttatg 327  Q
    |||||||||||||||||||||| ||||   ||||  ||| ||||||||||||||||||| | ||||||    
T  28803597 actttattttatcttttgttatcgaaa---taacttatatataagcacttatatgataagcatttatg 28803661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 260 - 327
Target Start/End: Complemental strand, 31461417 - 31461353
Alignment:
Q  260 actttattttatcttttgttatagaaatactaacaaatacataagcacttatatgataaacgtttatg 327  Q
    |||||||||||||||||||||||||||   || |  ||| |||| ||||||||||||| |||||||||    
T  31461417 actttattttatcttttgttatagaaa---tagcttatatataaccacttatatgatatacgtttatg 31461353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 259 - 288
Target Start/End: Complemental strand, 39567883 - 39567854
Alignment:
Q  259 aactttattttatcttttgttatagaaata 288  Q
    ||||||||||||||||||||||||||||||    
T  39567883 aactttattttatcttttgttatagaaata 39567854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 150 - 199
Target Start/End: Original strand, 43529812 - 43529861
Alignment:
Q  150 ataagcacttgtgaaactgtttgagagagtttaagaaaacagcttatgcc 199  Q
    |||||||||| ||| |||||||| |||| |||| ||||||||||||||||    
T  43529812 ataagcacttctgacactgtttgggagaatttatgaaaacagcttatgcc 43529861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 149 - 197
Target Start/End: Complemental strand, 1318353 - 1318305
Alignment:
Q  149 cataagcacttgtgaaactgtttgagagagtttaagaaaacagcttatg 197  Q
    ||||||||||||||| |||||||| ||||| ||| ||||||| ||||||    
T  1318353 cataagcacttgtgagactgtttgtgagagcttatgaaaacatcttatg 1318305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 260 - 288
Target Start/End: Original strand, 1939423 - 1939451
Alignment:
Q  260 actttattttatcttttgttatagaaata 288  Q
    |||||||||||||||||||||||||||||    
T  1939423 actttattttatcttttgttatagaaata 1939451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 260 - 288
Target Start/End: Original strand, 17952792 - 17952820
Alignment:
Q  260 actttattttatcttttgttatagaaata 288  Q
    |||||||||||||||||||||||||||||    
T  17952792 actttattttatcttttgttatagaaata 17952820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 254 - 286
Target Start/End: Original strand, 30990454 - 30990486
Alignment:
Q  254 aaaacaactttattttatcttttgttatagaaa 286  Q
    ||||||||||||||||||| |||||||||||||    
T  30990454 aaaacaactttattttatcatttgttatagaaa 30990486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 260 - 288
Target Start/End: Original strand, 32098399 - 32098427
Alignment:
Q  260 actttattttatcttttgttatagaaata 288  Q
    |||||||||||||||||||||||||||||    
T  32098399 actttattttatcttttgttatagaaata 32098427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000004; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 146 - 217
Target Start/End: Complemental strand, 4868519 - 4868449
Alignment:
Q  146 tgacataagcacttgtgaaactgtttgagagagtttaagaaaacagcttatgccgtgtcaataagatgtttt 217  Q
    ||||||| |||||||||| |||||||||||||||||| | ||||| |||||| | |||||||||| ||||||    
T  4868519 tgacataggcacttgtgagactgtttgagagagtttatg-aaacaacttatgacatgtcaataagttgtttt 4868449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 149 - 196
Target Start/End: Original strand, 43371844 - 43371891
Alignment:
Q  149 cataagcacttgtgaaactgtttgagagagtttaagaaaacagcttat 196  Q
    ||||||||||||||| |||||||||||||| ||| |||||||||||||    
T  43371844 cataagcacttgtgagactgtttgagagagcttatgaaaacagcttat 43371891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 148 - 217
Target Start/End: Original strand, 32515393 - 32515462
Alignment:
Q  148 acataagcacttgtgaaactgtttgagagagtttaagaaaacagcttatgccgtgtcaataagatgtttt 217  Q
    |||||||||||||||| |||||||| ||||| ||| | ||||||| |||| | |||||||||| ||||||    
T  32515393 acataagcacttgtgagactgtttgggagagcttatggaaacagcgtatgacatgtcaataagttgtttt 32515462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 169 - 259
Target Start/End: Complemental strand, 27140575 - 27140485
Alignment:
Q  169 tttgagagagtttaagaaaacagcttatgccgtgtcaataagatgttttaaccctacttccgtaacctctacaagatagcttattaaaaca 259  Q
    |||||||||||||||| |||||||||||| | |||| ||||| |||||| | | || || | ||| |||| || |||||||||| ||||||    
T  27140575 tttgagagagtttaaggaaacagcttatgacatgtccataagttgttttcagcttatttgcataagctctccatgatagcttataaaaaca 27140485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 259 - 288
Target Start/End: Complemental strand, 4549846 - 4549817
Alignment:
Q  259 aactttattttatcttttgttatagaaata 288  Q
    ||||||||||||||||||||||||||||||    
T  4549846 aactttattttatcttttgttatagaaata 4549817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 259 - 288
Target Start/End: Original strand, 4700156 - 4700185
Alignment:
Q  259 aactttattttatcttttgttatagaaata 288  Q
    ||||||||||||||||||||||||||||||    
T  4700156 aactttattttatcttttgttatagaaata 4700185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 260 - 327
Target Start/End: Complemental strand, 45234176 - 45234112
Alignment:
Q  260 actttattttatcttttgttatagaaatactaacaaatacataagcacttatatgataaacgtttatg 327  Q
    ||||||||||||||||| |||||||||   |||||  |||| ||||||| ||||||||||| ||||||    
T  45234176 actttattttatcttttattatagaaa---taacatgtacaaaagcactcatatgataaacatttatg 45234112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 259 - 288
Target Start/End: Complemental strand, 49557121 - 49557092
Alignment:
Q  259 aactttattttatcttttgttatagaaata 288  Q
    ||||||||||||||||||||||||||||||    
T  49557121 aactttattttatcttttgttatagaaata 49557092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 267 - 321
Target Start/End: Original strand, 4202227 - 4202278
Alignment:
Q  267 tttatcttttgttatagaaatactaacaaatacataagcacttatatgataaacg 321  Q
    ||||||||||||||||||||   ||||  |||| |||||||||||||||||||||    
T  4202227 tttatcttttgttatagaaa---taacttatacttaagcacttatatgataaacg 4202278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 260 - 318
Target Start/End: Original strand, 7274030 - 7274085
Alignment:
Q  260 actttattttatcttttgttatagaaatactaacaaatacataagcacttatatgataa 318  Q
    ||||||||| ||||||||||||| |||   ||||| ||||||||||| |||||||||||    
T  7274030 actttatttcatcttttgttataaaaa---taacatatacataagcatttatatgataa 7274085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 260 - 288
Target Start/End: Original strand, 14737796 - 14737824
Alignment:
Q  260 actttattttatcttttgttatagaaata 288  Q
    |||||||||||||||||||||||||||||    
T  14737796 actttattttatcttttgttatagaaata 14737824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 260 - 288
Target Start/End: Complemental strand, 15360873 - 15360845
Alignment:
Q  260 actttattttatcttttgttatagaaata 288  Q
    |||||||||||||||||||||||||||||    
T  15360873 actttattttatcttttgttatagaaata 15360845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 260 - 288
Target Start/End: Original strand, 17631192 - 17631220
Alignment:
Q  260 actttattttatcttttgttatagaaata 288  Q
    |||||||||||||||||||||||||||||    
T  17631192 actttattttatcttttgttatagaaata 17631220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 260 - 288
Target Start/End: Complemental strand, 36641854 - 36641826
Alignment:
Q  260 actttattttatcttttgttatagaaata 288  Q
    |||||||||||||||||||||||||||||    
T  36641854 actttattttatcttttgttatagaaata 36641826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 260 - 288
Target Start/End: Complemental strand, 49517049 - 49517021
Alignment:
Q  260 actttattttatcttttgttatagaaata 288  Q
    |||||||||||||||||||||||||||||    
T  49517049 actttattttatcttttgttatagaaata 49517021  T

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Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 260 - 288
Target Start/End: Complemental strand, 50319271 - 50319243
Alignment:
Q  260 actttattttatcttttgttatagaaata 288  Q
    |||||||||||||||||||||||||||||    
T  50319271 actttattttatcttttgttatagaaata 50319243  T

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Target: scaffold0110 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 146 - 219
Target Start/End: Original strand, 4173 - 4246
Alignment:
Q  146 tgacataagcacttgtgaaactgtttgagagagtttaagaaaacagcttatgccgtgtcaataagatgttttaa 219  Q
    ||||||||||||||||||   |||||| ||||||||| | ||||| |||||||  |||||||||| ||||||||    
T  4173 tgacataagcacttgtgagcttgtttgtgagagtttatggaaacaacttatgcattgtcaataagttgttttaa 4246  T

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Target: scaffold0024 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 260 - 318
Target Start/End: Complemental strand, 27555 - 27500
Alignment:
Q  260 actttattttatcttttgttatagaaatactaacaaatacataagcacttatatgataa 318  Q
    ||||||||||||||| |||||||||||   ||||  ||||||||||||||| |||||||    
T  27555 actttattttatcttctgttatagaaa---taacttatacataagcacttacatgataa 27500  T

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