View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17886_low_15 (Length: 376)
Name: NF17886_low_15
Description: NF17886
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17886_low_15 |
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Alignment Details
Target: chr8 (Bit Score: 302; Significance: 1e-170; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 12 - 356
Target Start/End: Original strand, 32617189 - 32617534
Alignment:
| Q |
12 |
aaaggcgcaaaaataagtaaagatatatgtnnnnnnnn-tcaggtgattgaatcccctaaagtcttgtggaaaacattatttgtgaaatatatatacctc |
110 |
Q |
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| T |
32617189 |
aaaggcgcaaaaataagtaaagatatatgtaaaaaaaaatctggtgattgaatcccctaaagtcttgtggaaaacattatttgtgaaatatatatacctc |
32617288 |
T |
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| Q |
111 |
aacaatggtatcagttccaaactctttcctccactgaagcatgtctgaccacatttgctttgatttctcaatttcaaatttccttgccctaaggaatctg |
210 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32617289 |
aacaacggtatcagttccaaactctttcctccactgaagcatgtctgaccacatttgctttgatttctcaatttcaaatttccttgccctaaggaatctg |
32617388 |
T |
|
| Q |
211 |
ttcagaaaaaagcatagacatatcagaatattcttatagattttcttttgaacaaggaggtttacttagttatccttattactcatgcacaaaatgcttc |
310 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32617389 |
ttcagaaaaaagcatagacatatccgaatattcttatagattttcttttgaacaaggaggtttacttagttatccttattactcatgcacaaaatgcttc |
32617488 |
T |
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| Q |
311 |
cctttcttaacattctctgtattattgagcaatatctacataggtt |
356 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32617489 |
cctttcttaacattctctgtattattgagcaatatctacataggtt |
32617534 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 148 - 209
Target Start/End: Complemental strand, 8070325 - 8070264
Alignment:
| Q |
148 |
agcatgtctgaccacatttgctttgatttctcaatttcaaatttccttgccctaaggaatct |
209 |
Q |
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| T |
8070325 |
agcatgtcagaccacatcagctttgatttatcaatttcaaatttcctggccttaaggaatct |
8070264 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 137 - 197
Target Start/End: Complemental strand, 26638674 - 26638614
Alignment:
| Q |
137 |
tcctccactgaagcatgtctgaccacatttgctttgatttctcaatttcaaatttccttgc |
197 |
Q |
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||||||| || ||||| |||| |||||||||||||| ||| ||||| ||||| |||||||| |
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| T |
26638674 |
tcctccattggagcatatctgcccacatttgctttgttttttcaatgtcaaacttccttgc |
26638614 |
T |
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