View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17886_low_16 (Length: 375)

Name: NF17886_low_16
Description: NF17886
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17886_low_16
NF17886_low_16
[»] scaffold0655 (1 HSPs)
scaffold0655 (16-357)||(399-741)
[»] chr3 (13 HSPs)
chr3 (43-240)||(8504271-8504470)
chr3 (133-339)||(42656345-42656555)
chr3 (26-145)||(10256142-10256262)
chr3 (23-145)||(10018825-10018948)
chr3 (23-145)||(10180022-10180145)
chr3 (16-145)||(10744728-10744858)
chr3 (23-111)||(10123365-10123454)
chr3 (133-187)||(4607363-4607417)
chr3 (23-145)||(19954499-19954622)
chr3 (267-324)||(10745336-10745394)
chr3 (24-89)||(27825742-27825808)
chr3 (117-188)||(10745543-10745612)
chr3 (26-106)||(35240284-35240364)
[»] chr8 (8 HSPs)
chr8 (23-187)||(7275192-7275356)
chr8 (25-144)||(13856639-13856759)
chr8 (23-145)||(7277797-7277919)
chr8 (23-123)||(3567536-3567639)
chr8 (133-187)||(26175346-26175400)
chr8 (124-193)||(29864643-29864712)
chr8 (320-357)||(4677484-4677521)
chr8 (269-298)||(26175185-26175214)
[»] chr7 (11 HSPs)
chr7 (23-187)||(41832532-41832696)
chr7 (23-145)||(41830168-41830290)
chr7 (117-257)||(23612171-23612309)
chr7 (127-272)||(7737147-7737295)
chr7 (23-145)||(8083437-8083559)
chr7 (19-132)||(25432047-25432160)
chr7 (134-202)||(219177-219245)
chr7 (135-187)||(34512753-34512805)
chr7 (269-339)||(34512548-34512619)
chr7 (23-112)||(23613667-23613757)
chr7 (26-106)||(35130552-35130632)
[»] chr5 (12 HSPs)
chr5 (23-187)||(21256546-21256710)
chr5 (133-339)||(35304832-35305028)
chr5 (85-232)||(15543763-15543911)
chr5 (23-145)||(21254116-21254238)
chr5 (23-122)||(31339186-31339286)
chr5 (23-145)||(26873209-26873331)
chr5 (72-191)||(17823473-17823594)
chr5 (133-193)||(43233754-43233814)
chr5 (134-272)||(41949496-41949637)
chr5 (269-339)||(41949706-41949777)
chr5 (220-272)||(43233701-43233753)
chr5 (149-186)||(22567043-22567080)
[»] scaffold0862 (1 HSPs)
scaffold0862 (23-187)||(148-312)
[»] chr2 (6 HSPs)
chr2 (23-187)||(31269511-31269674)
chr2 (68-187)||(24039384-24039503)
chr2 (133-341)||(36316443-36316657)
chr2 (23-146)||(31180185-31180307)
chr2 (68-145)||(24038231-24038308)
chr2 (23-123)||(36402731-36402832)
[»] scaffold0525 (1 HSPs)
scaffold0525 (23-187)||(2076-2241)
[»] chr4 (7 HSPs)
chr4 (132-272)||(11814982-11815122)
chr4 (23-147)||(2546986-2547110)
chr4 (133-272)||(5444558-5444700)
chr4 (19-145)||(7785322-7785451)
chr4 (267-339)||(11814843-11814916)
chr4 (269-339)||(5444418-5444489)
chr4 (72-112)||(20880136-20880176)
[»] chr1 (7 HSPs)
chr1 (23-145)||(18705756-18705878)
chr1 (127-272)||(9905943-9906091)
chr1 (155-254)||(35267640-35267739)
chr1 (63-145)||(12436186-12436268)
chr1 (269-339)||(9906158-9906230)
chr1 (61-137)||(35267563-35267639)
chr1 (23-145)||(50038529-50038652)
[»] scaffold0023 (1 HSPs)
scaffold0023 (23-145)||(111592-111714)
[»] chr6 (8 HSPs)
chr6 (66-145)||(30689725-30689804)
chr6 (23-145)||(8655875-8655991)
chr6 (133-184)||(14618884-14618935)
chr6 (269-339)||(6823360-6823431)
chr6 (135-187)||(6823176-6823229)
chr6 (23-99)||(1136277-1136353)
chr6 (133-168)||(29427297-29427332)
chr6 (23-63)||(24249770-24249810)
[»] scaffold0263 (2 HSPs)
scaffold0263 (133-272)||(22758-22900)
scaffold0263 (269-339)||(22624-22695)
[»] scaffold0251 (1 HSPs)
scaffold0251 (68-145)||(4583-4660)
[»] scaffold1412 (1 HSPs)
scaffold1412 (269-339)||(88-159)
[»] scaffold0001 (2 HSPs)
scaffold0001 (269-339)||(144986-145057)
scaffold0001 (135-187)||(144802-144855)


Alignment Details
Target: scaffold0655 (Bit Score: 295; Significance: 1e-166; HSPs: 1)
Name: scaffold0655
Description:

Target: scaffold0655; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 16 - 357
Target Start/End: Complemental strand, 741 - 399
Alignment:
Q  16 agtaaagctctttgtattgatggaaattgaatattaaaaatgagtgaagttaccctctaatggggtggatacaagttatttatactactctctactatga 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||    
T  741 agtaaagctctttgtattgatggaaattgaatattaaaaatgagtgaagtcaccctctaatggggtggatacaagttatttatactactctctactagga 642  T
Q  116 ttaatatgccactaatctatatctctaatagtcccccgcaagttggaaggtgttcacaacacttccaacttgggatgaacactacaatagtatatcaaac 215  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  641 ttaatatggcactaatctatatctctaatagtcccccgcaagttggaaggtgttcacaacacttccaacttgggatgaacaatacaatagtatatcaaac 542  T
Q  216 aaaggaaaatactaggacagatgccggaaataaatcggccaagagaatagcaacaacgcttaaccaccatccggtagaagcaaacaaccac-aaaccata 314  Q
    |||||||||||| |||| |||||||||||||| ||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||| ||||||||    
T  541 aaaggaaaatacaaggagagatgccggaaatacatcggccaagagaatagcaacaacgtttaaccaccatccggtggaagcaaacaaccacaaaaccata 442  T
Q  315 aaagacacaacgcttgaccaccaagcaaaccacttggcagaag 357  Q
    ||||||||||||||| |||||||||||||||||||||||||||    
T  441 aaagacacaacgcttaaccaccaagcaaaccacttggcagaag 399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 129; Significance: 1e-66; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 43 - 240
Target Start/End: Original strand, 8504271 - 8504470
Alignment:
Q  43 tgaatattaaaaatgagtgaagttaccctctaatggggtggatacaagttatttatactactctctactatgattaatatgccactaatctata--tctc 140  Q
    ||||||| | ||||||||||| | ||||||||||  ||| | |||||||||||||||||||||| ||||| || ||||||||||||||||||||  ||||    
T  8504271 tgaatatcacaaatgagtgaattgaccctctaatttggttgttacaagttatttatactactctttactaggactaatatgccactaatctatatatctc 8504370  T
Q  141 taatagtcccccgcaagttggaaggtgttcacaacacttccaacttgggatgaacactacaatagtatatcaaacaaaggaaaatactaggacagatgcc 240  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||| |||| |||||||    
T  8504371 taatagtcccccgcaagttggaaggtgttcacaacactttcaacttgggatgaacaatacaatagtatatcaaacaaaggaaaatacaaggagagatgcc 8504470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 133 - 339
Target Start/End: Original strand, 42656345 - 42656555
Alignment:
Q  133 tatatctctaatagtcccccgcaagttggaaggtgttcacaacacttccaacttgggatga-acactacaat--agtatatcaaacaaaggaaaatacta 229  Q
    |||||||||||||||||||| |||||||||||||||||| |||||||||||||||  |||| | | ||||    | || |  || |||| |||||||| |    
T  42656345 tatatctctaatagtccccctcaagttggaaggtgttcaaaacacttccaacttgaaatgagaaaatacacggaaatacactaagcaaatgaaaatacga 42656444  T
Q  230 ggacagatgccggaaataaatcggccaagagaatagcaacaacgcttaaccaccatccggtagaagcaaacaaccacaaa-ccataaaagacacaacgct 328  Q
    ||| ||||| ||| |||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||| |||||| ||    
T  42656445 ggaaagatgtcgggaatacatcggccaagagaatagcaacaacgcttaaccaccatccggtagaagccaacaaccacaaagccataaaaggcacaacact 42656544  T
Q  329 tgaccaccaag 339  Q
    | |||| ||||    
T  42656545 taaccatcaag 42656555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 26 - 145
Target Start/End: Original strand, 10256142 - 10256262
Alignment:
Q  26 tttgtattgatggaaattgaatattaaaaatgagtg-aagttaccctctaatggggtggatacaagttatttatactactctctactatgattaatatgc 124  Q
    |||||||||||||||||  ||||||| ||||||||| |||| ||| ||||||  ||||| ||||||||||||||||||||||||||||  | ||||||||    
T  10256142 tttgtattgatggaaatgaaatattacaaatgagtggaagtaaccatctaataaggtggttacaagttatttatactactctctactagaactaatatgc 10256241  T
Q  125 cactaatctatatctctaata 145  Q
    |||||||||||||||||||||    
T  10256242 cactaatctatatctctaata 10256262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 23 - 145
Target Start/End: Original strand, 10018825 - 10018948
Alignment:
Q  23 ctctttgtattgatggaaattgaatattaaaaatgagtg-aagttaccctctaatggggtggatacaagttatttatactactctctactatgattaata 121  Q
    ||||||||||||||||||||  ||||||| ||||||||| |||| ||| ||||||  ||||  ||||||||||||||||||||||||||||  | |||||    
T  10018825 ctctttgtattgatggaaatgaaatattacaaatgagtggaagtaaccatctaataaggtgattacaagttatttatactactctctactagaactaata 10018924  T
Q  122 tgccactaatctatatctctaata 145  Q
    ||||||||||||||||||||||||    
T  10018925 tgccactaatctatatctctaata 10018948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 23 - 145
Target Start/End: Original strand, 10180022 - 10180145
Alignment:
Q  23 ctctttgtattgatggaaattgaatattaaaaatgagtgaa-gttaccctctaatggggtggatacaagttatttatactactctctactatgattaata 121  Q
    ||||||||||||||||||||  ||||||| ||||||||||| || |||||||||| || ||  ||||||||||||||| ||||||||||||  | |||||    
T  10180022 ctctttgtattgatggaaatgaaatattacaaatgagtgaaagtaaccctctaataggatgattacaagttatttatattactctctactacaactaata 10180121  T
Q  122 tgccactaatctatatctctaata 145  Q
    ||||||||||||||||||||||||    
T  10180122 tgccactaatctatatctctaata 10180145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 16 - 145
Target Start/End: Complemental strand, 10744858 - 10744728
Alignment:
Q  16 agtaaagctctttgtattgatggaaattgaatattaaaaatgagtgaagttaccctctaatggggtggatacaagttatttatactactctctactatga 115  Q
    |||||||||||||||||||||||||||||||||||| |||| |||||| || ||| |||||| ||||| | |||| ||||||||||||| | || || ||    
T  10744858 agtaaagctctttgtattgatggaaattgaatattataaattagtgaaattgcccactaatgaggtggtttcaagctatttatactactatatattaaga 10744759  T
Q  116 ttaatatgccactaatc-tatatctctaata 145  Q
     |||||| ||||||||| |||||||||||||    
T  10744758 ctaatataccactaatcatatatctctaata 10744728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 23 - 111
Target Start/End: Original strand, 10123365 - 10123454
Alignment:
Q  23 ctctttgtattgatggaaattgaatattaaaaatgagtg-aagttaccctctaatggggtggatacaagttatttatactactctctact 111  Q
    ||||||||||||||||||||  ||||||| ||||||||| |||| ||||||||||  ||||| |||||||||||||||||||| ||||||    
T  10123365 ctctttgtattgatggaaatgaaatattacaaatgagtggaagtaaccctctaataaggtggttacaagttatttatactactttctact 10123454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 133 - 187
Target Start/End: Complemental strand, 4607417 - 4607363
Alignment:
Q  133 tatatctctaatagtcccccgcaagttggaaggtgttcacaacacttccaacttg 187  Q
    |||||||| ||||||||||| |||||||||||||||||| |||||||||||||||    
T  4607417 tatatctcaaatagtccccctcaagttggaaggtgttcaaaacacttccaacttg 4607363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 23 - 145
Target Start/End: Original strand, 19954499 - 19954622
Alignment:
Q  23 ctctttgtattgatggaaattgaatattaaaaatgagtg-aagttaccctctaatggggtggatacaagttatttatactactctctactatgattaata 121  Q
    |||||||||||||||||||| ||||| || ||||||||| ||||||||| |||||| ||| | |||||  ||||||||||||  ||||| | || || ||    
T  19954499 ctctttgtattgatggaaatggaataatacaaatgagtgaaagttacccactaatgaggttgttacaaactatttatactacaatctacaaagactatta 19954598  T
Q  122 tgccactaatctatatctctaata 145  Q
    ||  ||||| ||||||||| ||||    
T  19954599 tgaaactaaactatatctccaata 19954622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 267 - 324
Target Start/End: Complemental strand, 10745394 - 10745336
Alignment:
Q  267 aacaacgcttaaccaccatccggtagaagcaaacaaccacaaa-ccataaaagacacaa 324  Q
    |||||||||||||||||||| ||||||||||| || | |||||  ||||||||||||||    
T  10745394 aacaacgcttaaccaccatctggtagaagcaagcaccaacaaagtcataaaagacacaa 10745336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 24 - 89
Target Start/End: Original strand, 27825742 - 27825808
Alignment:
Q  24 tctttgtattgatgg-aaattgaatattaaaaatgagtgaagttaccctctaatggggtggatacaa 89  Q
    ||||||||||||||  ||| ||||||||| ||||||||||| | |||| |||||||||||| |||||    
T  27825742 tctttgtattgatgataaagtgaatattacaaatgagtgaattgacccactaatggggtggctacaa 27825808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 117 - 188
Target Start/End: Complemental strand, 10745612 - 10745543
Alignment:
Q  117 taatatgccactaatct-atatctctaatagtcccccgcaagttggaaggtgttcacaacacttccaacttgg 188  Q
    |||||| |||||||||| |||||| ||||||||||| ||||||||||||||| |  |||||||||||| ||||    
T  10745612 taatataccactaatcttatatct-taatagtcccctgcaagttggaaggtggt--caacacttccaatttgg 10745543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 26 - 106
Target Start/End: Complemental strand, 35240364 - 35240284
Alignment:
Q  26 tttgtattgatgg-aaattgaatattaaaaatgagtgaagttaccctctaatggggtggatacaagttatttatactactct 106  Q
    ||||||||||||  ||||||||||||| |||| |||||| | |||| |||||||||||| |||||  ||| |||||||||||    
T  35240364 tttgtattgatgataaattgaatattacaaataagtgaattaacccactaatggggtggttacaa-ctatatatactactct 35240284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 106; Significance: 6e-53; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 23 - 187
Target Start/End: Original strand, 7275192 - 7275356
Alignment:
Q  23 ctctttgtattgatggaaattgaatatta-aaaatgagtgaagttaccctctaatggggtggatacaagttatttatactactctctactatgattaata 121  Q
    |||||| |||||||| |||| |||||||| ||||||||  |||| ||||||||||||||||| |||||||||||||||||||||||||||| || |||||    
T  7275192 ctctttctattgatgaaaatggaatattacaaaatgagaaaagt-accctctaatggggtggttacaagttatttatactactctctactaggactaata 7275290  T
Q  122 tgccactaatctatatctctaatagtcccccgcaagttggaaggtgttcacaacacttccaacttg 187  Q
    ||| ||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||    
T  7275291 tgctactaatctatatctctaatagtccccctcaagttggaaggtgttcaaaacacttccaacttg 7275356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 25 - 144
Target Start/End: Complemental strand, 13856759 - 13856639
Alignment:
Q  25 ctttgtattgatggaaattgaatattaaaaatgagtgaa-gttaccctctaatggggtggatacaagttatttatactactctctactatgattaatatg 123  Q
    |||||||||||| ||||| ||||| || ||||||||||| || ||||||||||||||||| |||||||||||||||||||||||||||| || |||||||    
T  13856759 ctttgtattgatagaaatggaatactacaaatgagtgaaagtaaccctctaatggggtggttacaagttatttatactactctctactaggactaatatg 13856660  T
Q  124 ccactaatctatatctctaat 144  Q
    |||||||||||||||||||||    
T  13856659 ccactaatctatatctctaat 13856639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 23 - 145
Target Start/End: Original strand, 7277797 - 7277919
Alignment:
Q  23 ctctttgtattgatggaaattgaatatta-aaaatgagtgaagttaccctctaatggggtggatacaagttatttatactactctctactatgattaata 121  Q
    |||||| |||||||| |||| |||||||| ||||||||  |||| ||||||||||||||||| |||||||||||||||||||||||||||| || |||||    
T  7277797 ctctttctattgatgaaaatggaatattacaaaatgagaaaagt-accctctaatggggtggttacaagttatttatactactctctactaggactaata 7277895  T
Q  122 tgccactaatctatatctctaata 145  Q
    ||| | ||||||||||||||||||    
T  7277896 tgctaataatctatatctctaata 7277919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 23 - 123
Target Start/End: Original strand, 3567536 - 3567639
Alignment:
Q  23 ctctttgtattgatggaaattgaatattaaaaatgagtgaa---gttaccctctaatggggtggatacaagttatttatactactctctactatgattaa 119  Q
    ||||||||||||||| |||| |||||||| |||||||||||   ||  ||||||||| |||||| |||| ||||||||||||||||||| ||| || |||    
T  3567536 ctctttgtattgatgaaaatggaatattacaaatgagtgaaaaagtatccctctaatagggtggttacaggttatttatactactctctgctaggactaa 3567635  T
Q  120 tatg 123  Q
    ||||    
T  3567636 tatg 3567639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 133 - 187
Target Start/End: Complemental strand, 26175400 - 26175346
Alignment:
Q  133 tatatctctaatagtcccccgcaagttggaaggtgttcacaacacttccaacttg 187  Q
    |||||||||||||||||||| |||||||||||||||||| |||| ||||||||||    
T  26175400 tatatctctaatagtccccctcaagttggaaggtgttcaaaacatttccaacttg 26175346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 124 - 193
Target Start/End: Original strand, 29864643 - 29864712
Alignment:
Q  124 ccactaatctatatctctaatagtcccccgcaagttggaaggtgttcacaacacttccaacttgggatga 193  Q
    ||||||||||||||||||||||||||   ||||| || ||| ||||||||||||||||| |||| |||||    
T  29864643 ccactaatctatatctctaatagtcctatgcaagctgaaagatgttcacaacacttccagcttgagatga 29864712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 320 - 357
Target Start/End: Complemental strand, 4677521 - 4677484
Alignment:
Q  320 cacaacgcttgaccaccaagcaaaccacttggcagaag 357  Q
    |||||||||| |||||||||||||||||||||||||||    
T  4677521 cacaacgcttaaccaccaagcaaaccacttggcagaag 4677484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 269 - 298
Target Start/End: Complemental strand, 26175214 - 26175185
Alignment:
Q  269 caacgcttaaccaccatccggtagaagcaa 298  Q
    ||||||||||||||||||||||||||||||    
T  26175214 caacgcttaaccaccatccggtagaagcaa 26175185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 106; Significance: 6e-53; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 23 - 187
Target Start/End: Complemental strand, 41832696 - 41832532
Alignment:
Q  23 ctctttgtattgatggaaattgaatatta-aaaatgagtgaagttaccctctaatggggtggatacaagttatttatactactctctactatgattaata 121  Q
    |||||| |||||||| ||||||||||||| ||||||||  |||| ||||||||||||||||| |||||||||||||||||||||||||||| || |||||    
T  41832696 ctctttctattgatgaaaattgaatattacaaaatgagaaaagt-accctctaatggggtggttacaagttatttatactactctctactaggactaata 41832598  T
Q  122 tgccactaatctatatctctaatagtcccccgcaagttggaaggtgttcacaacacttccaacttg 187  Q
    ||| ||||||||||||||||||||||||||  |||||||||||||||||| |||||||||||||||    
T  41832597 tgctactaatctatatctctaatagtccccttcaagttggaaggtgttcaaaacacttccaacttg 41832532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 23 - 145
Target Start/End: Complemental strand, 41830290 - 41830168
Alignment:
Q  23 ctctttgtattgatggaaattgaatatta-aaaatgagtgaagttaccctctaatggggtggatacaagttatttatactactctctactatgattaata 121  Q
    |||||| |||||||| ||||||||||||| ||||||||  ||||| |||||||||||||||| |||||||||||||||||||||||||||| || |||||    
T  41830290 ctctttctattgatgtaaattgaatattacaaaatgagaaaagtt-ccctctaatggggtggttacaagttatttatactactctctactaggactaata 41830192  T
Q  122 tgccactaatctatatctctaata 145  Q
    ||| ||||||||||||||||||||    
T  41830191 tgctactaatctatatctctaata 41830168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 117 - 257
Target Start/End: Complemental strand, 23612309 - 23612171
Alignment:
Q  117 taatatgccactaatctatatctctaatagtcccccgcaagttggaaggtgttcacaacacttccaacttgggatgaacactacaatagtatatcaaaca 216  Q
    |||||||  ||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||  ||||||||| ||||  |||| | ||||||    
T  23612309 taatatgaaactaaactatatctctaatagtccctcgcaagttggaaggtgttcacaacacttccaactcaggatgaacaataca--agtaaaccaaaca 23612212  T
Q  217 aaggaaaatactaggacagatgccggaaataaatcggccaa 257  Q
    || ||||| || |||| | |||||||||||| |||| ||||    
T  23612211 aatgaaaacacaaggagaaatgccggaaatacatcgaccaa 23612171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 127 - 272
Target Start/End: Complemental strand, 7737295 - 7737147
Alignment:
Q  127 ctaatctatatctctaatagtcccccgcaagttggaaggtgttcacaacacttccaacttgggatga-acactacaa--tagtatatcaaacaaaggaaa 223  Q
    |||| |||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||| | | |||||   | || ||||| |||| ||||    
T  7737295 ctaacctatatctctaatagtcccccgcaagttggaaggtgttcaaaccacttccaacttgggatgagaaaatacaaggaaatacatcaagcaaatgaaa 7737196  T
Q  224 atactaggacagatgccggaaataaatcggccaagagaatagcaacaac 272  Q
    |||| | || |||||||||||||| |||| ||||||| |||| ||||||    
T  7737195 atacaaagaaagatgccggaaatacatcgaccaagagcatagaaacaac 7737147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 23 - 145
Target Start/End: Original strand, 8083437 - 8083559
Alignment:
Q  23 ctctttgtattgatggaaattgaatatta-aaaatgagtgaagttaccctctaatggggtggatacaagttatttatactactctctactatgattaata 121  Q
    |||||| |||||||| ||||  ||||||| |||||||   ||||| |||||||||||||||| || ||||||||||||||||||| ||||| || |||||    
T  8083437 ctctttctattgatgaaaatgaaatattacaaaatgacaaaagtt-ccctctaatggggtggttagaagttatttatactactctttactaggactaata 8083535  T
Q  122 tgccactaatctatatctctaata 145  Q
    ||| |||||||||||||| |||||    
T  8083536 tgctactaatctatatctttaata 8083559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 19 - 132
Target Start/End: Complemental strand, 25432160 - 25432047
Alignment:
Q  19 aaagctctttgtattgatggaaattgaatattaaaaatgagtgaagttaccctctaatggggtggatacaagttatttatactactctctactatgatta 118  Q
    |||| ||||| ||||||||||||||||||||||  ||||||||||  | ||| |||||||||||| |||||| |||||||| |||| |||| || || ||    
T  25432160 aaagttctttatattgatggaaattgaatattacgaatgagtgaaagtgcccactaatggggtggttacaagctatttatagtactatctattaggacta 25432061  T
Q  119 atatgccactaatc 132  Q
    |||| |||||||||    
T  25432060 atataccactaatc 25432047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 134 - 202
Target Start/End: Original strand, 219177 - 219245
Alignment:
Q  134 atatctctaatagtcccccgcaagttggaaggtgttcacaacacttccaacttgggatgaacactacaa 202  Q
    |||||||||||| || | || |||||||||||||||||||||||||||||||||||| ||||| |||||    
T  219177 atatctctaataatctcgcgaaagttggaaggtgttcacaacacttccaacttgggaagaacaatacaa 219245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 135 - 187
Target Start/End: Complemental strand, 34512805 - 34512753
Alignment:
Q  135 tatctctaatagtcccccgcaagttggaaggtgttcacaacacttccaacttg 187  Q
    |||||||||||||||||| |||||||||||||||||| ||||||| |||||||    
T  34512805 tatctctaatagtccccctcaagttggaaggtgttcaaaacactttcaacttg 34512753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 269 - 339
Target Start/End: Complemental strand, 34512619 - 34512548
Alignment:
Q  269 caacgcttaaccaccatccggtagaagcaaacaaccacaaa-ccataaaagacacaacgcttgaccaccaag 339  Q
    |||||||||||||||||||||||||||| || |  |||||| ||||||||| || ||||||| |||| ||||    
T  34512619 caacgcttaaccaccatccggtagaagccaatattcacaaagccataaaaggcataacgcttaaccatcaag 34512548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 23 - 112
Target Start/End: Complemental strand, 23613757 - 23613667
Alignment:
Q  23 ctctttgtattgatggaaattgaatattaaaaatgagtg-aagttaccctctaatggggtggatacaagttatttatactactctctacta 112  Q
    |||||| |||||||||||||  ||||||| ||||||||| ||||| ||| |||||  ||||| |||||  ||||||||||||  |||||||    
T  23613757 ctctttttattgatggaaatgaaatattacaaatgagtgaaagtttcccactaattaggtggttacaaactatttatactacaatctacta 23613667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 26 - 106
Target Start/End: Complemental strand, 35130632 - 35130552
Alignment:
Q  26 tttgtattgatgg-aaattgaatattaaaaatgagtgaagttaccctctaatggggtggatacaagttatttatactactct 106  Q
    ||||||||||||  ||| ||||||||| ||||||||||| | |||| |||||||||||| |||||  ||| |||||||||||    
T  35130632 tttgtattgatgataaagtgaatattacaaatgagtgaattaacccactaatggggtggttacaa-ctatatatactactct 35130552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 106; Significance: 6e-53; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 23 - 187
Target Start/End: Complemental strand, 21256710 - 21256546
Alignment:
Q  23 ctctttgtattgatggaaattgaatatta-aaaatgagtgaagttaccctctaatggggtggatacaagttatttatactactctctactatgattaata 121  Q
    |||||| |||||||| |||| |||||||| ||||||||  ||||| |||||||||||||||| ||||||||||||||||||||||||||||||| |||||    
T  21256710 ctctttctattgatgaaaatggaatattacaaaatgagaaaagtt-ccctctaatggggtggttacaagttatttatactactctctactatgactaata 21256612  T
Q  122 tgccactaatctatatctctaatagtcccccgcaagttggaaggtgttcacaacacttccaacttg 187  Q
    ||| ||||||||||||||||||||||||| | |||||||||||||||||| |||||||||||||||    
T  21256611 tgctactaatctatatctctaatagtccctctcaagttggaaggtgttcaaaacacttccaacttg 21256546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 133 - 339
Target Start/End: Original strand, 35304832 - 35305028
Alignment:
Q  133 tatatctctaatagtcccccgcaagttggaaggtgttcacaacacttccaacttgggatgaacactacaatagtatatcaaacaaaggaaaatactagga 232  Q
    |||||||| ||||||||||| |||||||||||||||||| |||||||||||||||  ||||  |       | || ||||| ||||     |||| ||||    
T  35304832 tatatctcaaatagtccccctcaagttggaaggtgttcaaaacacttccaacttgaaatgagaa-------aatacatcaagcaaat----atacaagga 35304920  T
Q  233 cagatgccggaaataaatcggccaagagaatagcaacaacgcttaaccaccatccggtagaagcaaacaaccacaaa-ccataaaagacacaacgcttga 331  Q
     |||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||| |    
T  35304921 aagatgccggaaatacatcggccaagagaatagaaacaacgcttaaccaccatccggtagaagcaaacaaccacaaagccataaaaggcacaacgcttaa 35305020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 85 - 232
Target Start/End: Original strand, 15543763 - 15543911
Alignment:
Q  85 tacaagttatttatactactct-ctactatgattaatatgccactaatctatatctctaatagtcccccgcaagttggaaggtgttcacaacacttccaa 183  Q
    |||||| |||||||||||||   ||| || || ||||||||||||| | ||||| || |||||| ||| ||||||||||||||||||||| |||||||||    
T  15543763 tacaagctatttatactacttaactattaggactaatatgccactagtttatatttccaatagtgcccagcaagttggaaggtgttcacagcacttccaa 15543862  T
Q  184 cttgggatgaacactacaatagtatatcaaacaaaggaaaatactagga 232  Q
    |||| |||||||| ||||| |||| |||||||||| |||||||| ||||    
T  15543863 cttgagatgaacaatacaaaagtacatcaaacaaatgaaaatacaagga 15543911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 23 - 145
Target Start/End: Complemental strand, 21254238 - 21254116
Alignment:
Q  23 ctctttgtattgatggaaattgaatatta-aaaatgagtgaagttaccctctaatggggtggatacaagttatttatactactctctactatgattaata 121  Q
    |||||| |||||||| |||  |||||||| ||||||||  ||||| ||||||||||||| || |||||||||||||||||||||||||||| || |||||    
T  21254238 ctctttctattgatgaaaaaggaatattacaaaatgagaaaagtt-ccctctaatggggcggttacaagttatttatactactctctactaggactaata 21254140  T
Q  122 tgccactaatctatatctctaata 145  Q
    ||| ||||||||||||||||||||    
T  21254139 tgctactaatctatatctctaata 21254116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 23 - 122
Target Start/End: Original strand, 31339186 - 31339286
Alignment:
Q  23 ctctttgtattgatggaaattgaatatta-aaaatgagtgaagttaccctctaatggggtggatacaagttatttatactactctctactatgattaata 121  Q
    |||||| ||| |||||||||||||||||| |||||||||||| | |||| |||||||||||| |||||||||||||||||||||||||||| || |||||    
T  31339186 ctctttctatcgatggaaattgaatattacaaaatgagtgaattgacccactaatggggtggttacaagttatttatactactctctactaggactaata 31339285  T
Q  122 t 122  Q
    |    
T  31339286 t 31339286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 23 - 145
Target Start/End: Original strand, 26873209 - 26873331
Alignment:
Q  23 ctctttgtattgatggaaattgaatattaa-aaatgagtgaagttaccctctaatggggtggatacaagttatttatactactctctactatgattaata 121  Q
    |||||| ||||||||||||| ||||||||  |||||||  ||||| || ||||||||  ||  |||||||||||| ||||||||||||||| || |||||    
T  26873209 ctctttctattgatggaaatagaatattacgaaatgagaaaagtttcc-tctaatggaatgattacaagttatttttactactctctactaggactaata 26873307  T
Q  122 tgccactaatctatatctctaata 145  Q
    ||| ||||||||||||||||||||    
T  26873308 tgctactaatctatatctctaata 26873331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 72 - 191
Target Start/End: Complemental strand, 17823594 - 17823473
Alignment:
Q  72 ctaatggggtggatacaagttatttatactactctctactatgattaatatgccactaatctatatctct--aatagtcccccgcaagttggaaggtgtt 169  Q
    ||||| || ||| |||||||||||||||||| | | |||||||| |||| | ||| |||||||||| | |  |||||||||| |||||||||||||||||    
T  17823594 ctaataggatggctacaagttatttatactaatatttactatgactaatgtaccattaatctatatatatccaatagtcccctgcaagttggaaggtgtt 17823495  T
Q  170 cacaacacttccaacttgggat 191  Q
    || ||||||| |||||||||||    
T  17823494 cataacactttcaacttgggat 17823473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 133 - 193
Target Start/End: Complemental strand, 43233814 - 43233754
Alignment:
Q  133 tatatctctaatagtcccccgcaagttggaaggtgttcacaacacttccaacttgggatga 193  Q
    |||| |||||||||||||||||||||||||||| ||||| |||||||||||||||||||||    
T  43233814 tataactctaatagtcccccgcaagttggaaggcgttcaaaacacttccaacttgggatga 43233754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 134 - 272
Target Start/End: Original strand, 41949496 - 41949637
Alignment:
Q  134 atatctctaatagtcccccgcaagttggaaggtgttcacaacacttccaacttgggatga-acactacaat--agtatatcaaacaaaggaaaatactag 230  Q
    |||| |||||||||||||| |||||||||||||| ||| ||||||||||  |||  |||| | | |||||   | || ||||| |||| |||||||| ||    
T  41949496 atatatctaatagtccccctcaagttggaaggtgctcaaaacacttccacattgaaatgagaaaatacaaggaaatacatcaagcaaatgaaaatacaag 41949595  T
Q  231 gacagatgccggaaataaatcggccaagagaatagcaacaac 272  Q
    || |||||||||||||| |||||||||||||| |||| ||||    
T  41949596 gaaagatgccggaaatatatcggccaagagaagagcagcaac 41949637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 269 - 339
Target Start/End: Original strand, 41949706 - 41949777
Alignment:
Q  269 caacgcttaaccaccatccggtagaagcaaacaaccacaaa-ccataaaagacacaacgcttgaccaccaag 339  Q
    |||| ||||||||||||||||||||||| |||| | ||||| ||||||||| |||||||||| |||| ||||    
T  41949706 caacacttaaccaccatccggtagaagccaacatcgacaaagccataaaaggcacaacgcttaaccatcaag 41949777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 220 - 272
Target Start/End: Complemental strand, 43233753 - 43233701
Alignment:
Q  220 gaaaatactaggacagatgccggaaataaatcggccaagagaatagcaacaac 272  Q
    |||||||| |||| |||| ||||||||| |||| |||||||||||||||||||    
T  43233753 gaaaatacaaggaaagataccggaaatacatcgaccaagagaatagcaacaac 43233701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 149 - 186
Target Start/End: Original strand, 22567043 - 22567080
Alignment:
Q  149 ccccgcaagttggaaggtgttcacaacacttccaactt 186  Q
    ||||||||  ||||||||||||||||||||||||||||    
T  22567043 ccccgcaaactggaaggtgttcacaacacttccaactt 22567080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0862 (Bit Score: 98; Significance: 3e-48; HSPs: 1)
Name: scaffold0862
Description:

Target: scaffold0862; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 23 - 187
Target Start/End: Complemental strand, 312 - 148
Alignment:
Q  23 ctctttgtattgatggaaattgaatatta-aaaatgagtgaagttaccctctaatggggtggatacaagttatttatactactctctactatgattaata 121  Q
    |||||| |||||||| |||| |||||||| ||||||||  ||||| |||||||||||||||| |||||||||||||||||| ||||||||| || |||||    
T  312 ctctttctattgatgaaaatggaatattacaaaatgagaaaagtt-ccctctaatggggtggttacaagttatttatactattctctactaggactaata 214  T
Q  122 tgccactaatctatatctctaatagtcccccgcaagttggaaggtgttcacaacacttccaacttg 187  Q
    ||| ||||||||||||||||||||||||||| ||||||| |||||||||| |||||||||||||||    
T  213 tgctactaatctatatctctaatagtccccctcaagttgaaaggtgttcaaaacacttccaacttg 148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 98; Significance: 3e-48; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 23 - 187
Target Start/End: Original strand, 31269511 - 31269674
Alignment:
Q  23 ctctttgtattgatggaaattgaatatta-aaaatgagtgaagttaccctctaatggggtggatacaagttatttatactactctctactatgattaata 121  Q
    |||||| |||||||||||||||||||||| ||||||||  |||| ||||||||||||||||| ||||||||||||||| |||||||||||| || |||||    
T  31269511 ctctttctattgatggaaattgaatattacaaaatgagaaaagt-accctctaatggggtggttacaagttatttatattactctctactaggactaata 31269609  T
Q  122 tgccactaatctatatctctaatagtcccccgcaagttggaaggtgttcacaacacttccaacttg 187  Q
    ||| |||| ||||||| |||||||||||||| |||||||||||||||||| |||||||||||||||    
T  31269610 tgctacta-tctatatatctaatagtccccctcaagttggaaggtgttcaaaacacttccaacttg 31269674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 68 - 187
Target Start/End: Complemental strand, 24039503 - 24039384
Alignment:
Q  68 ccctctaatggggtggatacaagttatttatactactctctactatgattaatatgccactaatctatatctctaatagtcccccgcaagttggaaggtg 167  Q
    |||||||||| ||||| |||||||||||||||||||||||||||| || |||||||| ||||||||||||||||||||||||||| ||||||||||||||    
T  24039503 ccctctaatgaggtggttacaagttatttatactactctctactaggactaatatgctactaatctatatctctaatagtccccctcaagttggaaggtg 24039404  T
Q  168 ttcacaacacttccaacttg 187  Q
    |||| |||||||||||||||    
T  24039403 ttcaaaacacttccaacttg 24039384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 133 - 341
Target Start/End: Original strand, 36316443 - 36316657
Alignment:
Q  133 tatatctctaatagtcccccgcaagttggaaggtgttcacaa-cacttccaacttgggatga-acactacaatagtata--tcaaacaaaggaaaatact 228  Q
    |||||||||||||||||||| |||||||||||||||||| || |||||||||||||  || | | | ||||| |  |||  |||| |||| ||||||||     
T  36316443 tatatctctaatagtccccctcaagttggaaggtgttcaaaaacacttccaacttgaaataagaaaatacaagaaaatacatcaagcaaatgaaaataca 36316542  T
Q  229 aggacagatgccggaaataaatcggccaagagaatagcaacaacgcttaaccaccatccggtagaagcaaacaacca-caaa-ccataaaagacacaacg 326  Q
    |||| |||||| ||||||| |  ||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||| |||   ||| |||||||    
T  36316543 aggaaagatgctggaaatacactggccaagagaatagcaacaacgcttaaccaccatctggtagaagcaaacaaccaacaaagccaattaaggcacaacg 36316642  T
Q  327 cttgaccaccaagca 341  Q
    ||| |||||||||||    
T  36316643 cttaaccaccaagca 36316657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 23 - 146
Target Start/End: Complemental strand, 31180307 - 31180185
Alignment:
Q  23 ctctttgtattgatggaaattgaatatta-aaaatgagtgaagttaccctctaatggggtggatacaagttatttatactactctctactatgattaata 121  Q
    |||||| ||||||||||||| |||||||| ||||||||  ||||  |||||||||||||||| || ||||||||||||||||||||||||| || |||||    
T  31180307 ctctttctattgatggaaatggaatattacaaaatgagaaaagt--ccctctaatggggtggttagaagttatttatactactctctactaggactaata 31180210  T
Q  122 tgccactaatctatatctctaatag 146  Q
    ||| |||||||||||||||||||||    
T  31180209 tgctactaatctatatctctaatag 31180185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 68 - 145
Target Start/End: Complemental strand, 24038308 - 24038231
Alignment:
Q  68 ccctctaatggggtggatacaagttatttatactactctctactatgattaatatgccactaatctatatctctaata 145  Q
    ||||||||||| |||| |||||||||||||||||||||||||||| || |||||||| ||||||||||||||||||||    
T  24038308 ccctctaatggagtggttacaagttatttatactactctctactaggactaatatgctactaatctatatctctaata 24038231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 23 - 123
Target Start/End: Original strand, 36402731 - 36402832
Alignment:
Q  23 ctctttgtattgatggaaattgaatattaaaaatgagtg-aagttaccctctaatggggtggatacaagttatttatactactctctactatgattaata 121  Q
    |||||||||||||||||||| |||||||| ||||||||| ||||||||| |||||||||||| |||||  |||||||||||   ||||||| || |||||    
T  36402731 ctctttgtattgatggaaatagaatattacaaatgagtgaaagttacccactaatggggtggttacaaactatttatactaaaatctactaagactaata 36402830  T
Q  122 tg 123  Q
    ||    
T  36402831 tg 36402832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0525 (Bit Score: 95; Significance: 2e-46; HSPs: 1)
Name: scaffold0525
Description:

Target: scaffold0525; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 23 - 187
Target Start/End: Original strand, 2076 - 2241
Alignment:
Q  23 ctctttgtattgatggaaattgaatatta-aaaatgagtgaagttaccctctaatggggtggatacaagttatttatactactctctactatgattaata 121  Q
    |||||| ||||||||||||| |||||||| ||||||||  ||||| |||||||||||||||| |||||||||||||||||||||||||||| || |||||    
T  2076 ctctttctattgatggaaatggaatattacaaaatgagaaaagtt-ccctctaatggggtggttacaagttatttatactactctctactaggactaata 2174  T
Q  122 tgccactaatctatatctctaatagtcccccgcaagttggaaggtgttc-acaacacttccaacttg 187  Q
    ||| | ||||||||||||||||||||||||| |||||| |||||||||| | |||||||||||||||    
T  2175 tgctattaatctatatctctaatagtccccctcaagttagaaggtgttcaaaaacacttccaacttg 2241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 89; Significance: 8e-43; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 132 - 272
Target Start/End: Complemental strand, 11815122 - 11814982
Alignment:
Q  132 ctatatctctaatagtcccccgcaagttggaaggtgttcacaacacttccaacttgggatgaacactacaatagtatatcaaacaaaggaaaatactagg 231  Q
    ||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||| ||||| |||| |||||||||| |||||||| ||     
T  11815122 ctatatctctaatagtctcccgcaagttggaaggtgtttacaacacttccaacttgggatgaacaatacaaaagtacatcaaacaaatgaaaatacaagt 11815023  T
Q  232 acagatgccggaaataaatcggccaagagaatagcaacaac 272  Q
    | ||||||||||| |  |||||||||||| |||||||||||    
T  11815022 agagatgccggaagtttatcggccaagagcatagcaacaac 11814982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 23 - 147
Target Start/End: Complemental strand, 2547110 - 2546986
Alignment:
Q  23 ctctttgtattgatggaaattgaatatta-aaaatgagtgaagttaccctctaatggggtggatacaagttatttatactactctctactatgattaata 121  Q
    |||||||||||||| ||||| |||||||| ||||||||  ||||| |||||||||||||||| |||||||||||||||||||||||||||| || |||||    
T  2547110 ctctttgtattgatagaaatggaatattacaaaatgagaaaagtt-ccctctaatggggtggttacaagttatttatactactctctactaggactaata 2547012  T
Q  122 tgccactaatctatatctctaatagt 147  Q
    ||| ||||||||||||||||||||||    
T  2547011 tgctactaatctatatctctaatagt 2546986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 133 - 272
Target Start/End: Complemental strand, 5444700 - 5444558
Alignment:
Q  133 tatatctctaatagtcccccgcaagttggaaggtgttcacaacacttccaacttgggatga-acactacaa--tagtatatcaaacaaaggaaaatacta 229  Q
    |||||||||||||||||||| |||||||||||||||||| |||||||||||||||  |||| | | |||||   |  | ||||| |||| |||||||| |    
T  5444700 tatatctctaatagtccccctcaagttggaaggtgttcaaaacacttccaacttgaaatgagaaaatacaaggaaagacatcaagcaaatgaaaatacaa 5444601  T
Q  230 ggacagatgccggaaataaatcggccaagagaatagcaacaac 272  Q
    | | |||||||||||||| |||||||||||| |||||||||||    
T  5444600 gtaaagatgccggaaatacatcggccaagagcatagcaacaac 5444558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 19 - 145
Target Start/End: Original strand, 7785322 - 7785451
Alignment:
Q  19 aaagctctttgtattgatggaaattgaatattaaaaatgagtg-aagttaccctctaatgg--ggtggatacaagttatttatactactctctactatga 115  Q
    ||||||||||||||||||||||||||||||||| ||||||||| ||||||||| |||||||  ||||  ||||| |||||||||||||  ||||||| ||    
T  7785322 aaagctctttgtattgatggaaattgaatattacaaatgagtgaaagttacccactaatgggcggtgattacaaattatttatactacaatctactaaga 7785421  T
Q  116 ttaatatgccactaatctatatctctaata 145  Q
     ||||| |  ||||| ||||||||| ||||    
T  7785422 ctaatacgaaactaaactatatctccaata 7785451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 267 - 339
Target Start/End: Complemental strand, 11814916 - 11814843
Alignment:
Q  267 aacaacgcttaaccaccatccggtagaagcaaacaaccacaaa-ccataaaagacacaacgcttgaccaccaag 339  Q
    |||||||||||||||||||  ||||||||||| ||| |||||| |||||||||||||||||||| |||| ||||    
T  11814916 aacaacgcttaaccaccatatggtagaagcaagcaagcacaaagccataaaagacacaacgcttaaccatcaag 11814843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 269 - 339
Target Start/End: Complemental strand, 5444489 - 5444418
Alignment:
Q  269 caacgcttaaccaccatccggtagaagcaaacaaccacaaa-ccataaaagacacaacgcttgaccaccaag 339  Q
    |||||||||||||||||||||||||||| |||| | ||||| ||||||||| |||||||||| |||| ||||    
T  5444489 caacgcttaaccaccatccggtagaagccaacatcaacaaagccataaaaggcacaacgcttaaccatcaag 5444418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 72 - 112
Target Start/End: Original strand, 20880136 - 20880176
Alignment:
Q  72 ctaatggggtggatacaagttatttatactactctctacta 112  Q
    |||||||||||| |||||||||||||||||||| |||||||    
T  20880136 ctaatggggtggttacaagttatttatactactgtctacta 20880176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 72; Significance: 1e-32; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 23 - 145
Target Start/End: Original strand, 18705756 - 18705878
Alignment:
Q  23 ctctttgtattgatggaaattgaatatta-aaaatgagtgaagttaccctctaatggggtggatacaagttatttatactactctctactatgattaata 121  Q
    |||||| |||||||| |||| |||||||| ||||||||  ||||| |||||||||||||||| |||||||||||||||||||||||||||| || |||||    
T  18705756 ctctttctattgatgaaaatagaatattacaaaatgagaaaagtt-ccctctaatggggtggttacaagttatttatactactctctactaggactaata 18705854  T
Q  122 tgccactaatctatatctctaata 145  Q
    ||| ||||||||||||||||||||    
T  18705855 tgctactaatctatatctctaata 18705878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 127 - 272
Target Start/End: Original strand, 9905943 - 9906091
Alignment:
Q  127 ctaatctatatctctaatagtcccccgcaagttggaaggtgttcacaacacttccaacttgggatga-acactacaa--tagtatatcaaacaaaggaaa 223  Q
    |||| ||||||||||||||||||||| |||||||||||||||||| |||||||||||||||  |||| | | |||||   | || ||| | |||| |||     
T  9905943 ctaaactatatctctaatagtccccctcaagttggaaggtgttcaaaacacttccaacttgaaatgagaaaatacaaggaaatacatcgagcaaatgaat 9906042  T
Q  224 atactaggacagatgccggaaataaatcggccaagagaatagcaacaac 272  Q
    |||| | || ||||| ||| |||| ||||||||||||||||||||||||    
T  9906043 atacaatgaaagatgtcgggaatacatcggccaagagaatagcaacaac 9906091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 155 - 254
Target Start/End: Original strand, 35267640 - 35267739
Alignment:
Q  155 aagttggaaggtgttcacaacacttccaacttgggatgaacactacaatagtatatcaaacaaaggaaaatactaggacagatgccggaaataaatcggc 254  Q
    |||||||||||||||||||||||||||||||||||||||  | ||||| |||| ||| |||||| ||||  || || | |||||||||||| | ||||||    
T  35267640 aagttggaaggtgttcacaacacttccaacttgggatgagaaatacaaaagtacatcgaacaaaagaaatgacaagaagagatgccggaaacacatcggc 35267739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 63 - 145
Target Start/End: Complemental strand, 12436268 - 12436186
Alignment:
Q  63 agttaccctctaatggggtggatacaagttatttatactactctctactatgattaatatgccactaatctatatctctaata 145  Q
    |||||||| |||||||||||| ||| || ||||||||||||| | |||||  | |||||||||||||||||||||||| ||||    
T  12436268 agttacccactaatggggtggttactagctatttatactactatttactagaactaatatgccactaatctatatctccaata 12436186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 269 - 339
Target Start/End: Original strand, 9906158 - 9906230
Alignment:
Q  269 caacgcttaaccaccatccggtagaag-caaacaaccacaaa-ccataaaagacacaacgcttgaccaccaag 339  Q
    ||||||||||||||||||||||||||| ||| |||| ||||| || |||||| |||||||||| |||| ||||    
T  9906158 caacgcttaaccaccatccggtagaagccaatcaacaacaaagccttaaaaggcacaacgcttaaccatcaag 9906230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 61 - 137
Target Start/End: Original strand, 35267563 - 35267639
Alignment:
Q  61 gaagttaccctctaatggggtggatacaagttatttatactactctctactatgattaatatgccactaatctatat 137  Q
    |||||| ||| |||||||||| | |||||||||||||||||| |  |||||| ||||||| || |||| ||||||||    
T  35267563 gaagttgcccactaatggggttgttacaagttatttatactaatgcctactaggattaatgtgtcactcatctatat 35267639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 23 - 145
Target Start/End: Complemental strand, 50038652 - 50038529
Alignment:
Q  23 ctctttgtattgatggaaattgaatattaaaaatgagtgaagttaccctctaatggggtggatacaagttatttatactactctctactatgattaatat 122  Q
    ||||||||||||||| | || |||  ||| |||||||||||  | ||| |||||||||| | |||||| ||||| |  |||| |||| || || ||||||    
T  50038652 ctctttgtattgatgaagatagaaagttacaaatgagtgaaagttcccactaatggggtagttacaagctatttttggtactatctattaggactaatat 50038553  T
Q  123 gccactaatc-tatatctctaata 145  Q
     ||||||||| |||||||||||||    
T  50038552 accactaatcttatatctctaata 50038529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0023 (Bit Score: 68; Significance: 3e-30; HSPs: 1)
Name: scaffold0023
Description:

Target: scaffold0023; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 23 - 145
Target Start/End: Original strand, 111592 - 111714
Alignment:
Q  23 ctctttgtattgatggaaattgaatatta-aaaatgagtgaagttaccctctaatggggtggatacaagttatttatactactctctactatgattaata 121  Q
    |||||| |||||||  |||| |||||||| ||||||||  ||||| |||||||||||||||| |||||||||||||||||||||||||||| || |||||    
T  111592 ctctttttattgatttaaatggaatattacaaaatgagaaaagtt-ccctctaatggggtggttacaagttatttatactactctctactaggactaata 111690  T
Q  122 tgccactaatctatatctctaata 145  Q
    ||| ||||||||||||||||||||    
T  111691 tgctactaatctatatctctaata 111714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 60; Significance: 2e-25; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 66 - 145
Target Start/End: Original strand, 30689725 - 30689804
Alignment:
Q  66 taccctctaatggggtggatacaagttatttatactactctctactatgattaatatgccactaatctatatctctaata 145  Q
    |||||||||||||||||| ||||| |||||||||||||||||||||| || |||||||| ||||||||||||||||||||    
T  30689725 taccctctaatggggtggttacaaattatttatactactctctactaggactaatatgctactaatctatatctctaata 30689804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 23 - 145
Target Start/End: Original strand, 8655875 - 8655991
Alignment:
Q  23 ctctttgtattgatggaaattgaatatta-aaaatgagtgaagttaccctctaatggggtggatacaagttatttatactactctctactatgattaata 121  Q
    |||||| ||||||||||||| |||||||| ||||||||  ||||| |||||||||||||||| ||||||||||||||||||||||||||      |||||    
T  8655875 ctctttctattgatggaaatggaatattacaaaatgagaaaagtt-ccctctaatggggtggttacaagttatttatactactctctac------taata 8655967  T
Q  122 tgccactaatctatatctctaata 145  Q
    ||| | ||||||||||||||||||    
T  8655968 tgctattaatctatatctctaata 8655991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 133 - 184
Target Start/End: Original strand, 14618884 - 14618935
Alignment:
Q  133 tatatctctaatagtcccccgcaagttggaaggtgttcacaacacttccaac 184  Q
    |||||||||||||||||||| |||||||||||||||||| ||||||||||||    
T  14618884 tatatctctaatagtccccctcaagttggaaggtgttcaaaacacttccaac 14618935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 269 - 339
Target Start/End: Original strand, 6823360 - 6823431
Alignment:
Q  269 caacgcttaaccaccatccggtagaagcaaacaaccacaaa-ccataaaagacacaacgcttgaccaccaag 339  Q
    |||||||||||||||||||||||||||| || | ||||||| ||||||||| |||||||||| |||| ||||    
T  6823360 caacgcttaaccaccatccggtagaagccaatatccacaaagccataaaaggcacaacgcttaaccatcaag 6823431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 135 - 187
Target Start/End: Original strand, 6823176 - 6823229
Alignment:
Q  135 tatctctaatagtcccccgcaagttggaaggtgttc-acaacacttccaacttg 187  Q
    |||||||||||||||||| ||||||||||||||||| | |||||||||||||||    
T  6823176 tatctctaatagtccccctcaagttggaaggtgttcaaaaacacttccaacttg 6823229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 23 - 99
Target Start/End: Original strand, 1136277 - 1136353
Alignment:
Q  23 ctctttgtattgatggaaattgaatattaaaaatgagtgaagttaccctctaatggggtggatacaagttatttata 99  Q
    |||||| |||||||||||||||||||||| |||||||||||  |  || |||||||||||| |||| | ||||||||    
T  1136277 ctctttatattgatggaaattgaatattacaaatgagtgaaagtgtccactaatggggtgggtacacgctatttata 1136353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 133 - 168
Target Start/End: Complemental strand, 29427332 - 29427297
Alignment:
Q  133 tatatctctaatagtcccccgcaagttggaaggtgt 168  Q
    |||||||||||||||||||| |||||||||||||||    
T  29427332 tatatctctaatagtccccctcaagttggaaggtgt 29427297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 23 - 63
Target Start/End: Complemental strand, 24249810 - 24249770
Alignment:
Q  23 ctctttgtattgatggaaattgaatattaaaaatgagtgaa 63  Q
    ||||||||||| |||||||| |||||||| |||||||||||    
T  24249810 ctctttgtattaatggaaatggaatattacaaatgagtgaa 24249770  T

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Target: scaffold0263 (Bit Score: 52; Significance: 1e-20; HSPs: 2)
Name: scaffold0263
Description:

Target: scaffold0263; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 133 - 272
Target Start/End: Complemental strand, 22900 - 22758
Alignment:
Q  133 tatatctctaatagtcccccgcaagttggaaggtgttcacaacacttccaacttgggatga-acactacaa--tagtatatcaaacaaaggaaaatacta 229  Q
    |||||||||||||||||||| || ||||||||||||||| ||||||||||| |||  |||| | | |||||   | || ||||| |||| |||||||| |    
T  22900 tatatctctaatagtccccctcatgttggaaggtgttcaaaacacttccaatttgaaatgagaaaatacaaggaaatacatcaagcaaatgaaaatacaa 22801  T
Q  230 ggacagatgccggaaataaatcggccaagagaatagcaacaac 272  Q
    ||  |||||||||||||| |||||||||||| |||||||||||    
T  22800 ggtaagatgccggaaatacatcggccaagagcatagcaacaac 22758  T

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Target: scaffold0263; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 269 - 339
Target Start/End: Complemental strand, 22695 - 22624
Alignment:
Q  269 caacgcttaaccaccatccggtagaagcaaacaaccacaaa-ccataaaagacacaacgcttgaccaccaag 339  Q
    |||||||||||||||||||||| ||||| |||| | ||||| |||||||||||||||||||| |||| ||||    
T  22695 caacgcttaaccaccatccggtggaagccaacatcgacaaagccataaaagacacaacgcttaaccatcaag 22624  T

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Target: scaffold0251 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: scaffold0251
Description:

Target: scaffold0251; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 68 - 145
Target Start/End: Complemental strand, 4660 - 4583
Alignment:
Q  68 ccctctaatggggtggatacaagttatttatactactctctactatgattaatatgccactaatctatatctctaata 145  Q
    ||||||||| |||||| ||||| |||||||||||||||||||||| || |||||||| |||||||||||| |||||||    
T  4660 ccctctaatagggtggttacaaattatttatactactctctactaggactaatatgctactaatctatatatctaata 4583  T

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Target: scaffold1412 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold1412
Description:

Target: scaffold1412; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 269 - 339
Target Start/End: Original strand, 88 - 159
Alignment:
Q  269 caacgcttaaccaccatccggtagaagcaaacaaccacaaa-ccataaaagacacaacgcttgaccaccaag 339  Q
    |||||||||||||||||||||||||||| || | ||||||| ||||||||| |||||||||| |||| ||||    
T  88 caacgcttaaccaccatccggtagaagccaatatccacaaagccataaaaggcacaacgcttaaccatcaag 159  T

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Target: scaffold0001 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 269 - 339
Target Start/End: Original strand, 144986 - 145057
Alignment:
Q  269 caacgcttaaccaccatccggtagaagcaaacaaccacaaa-ccataaaagacacaacgcttgaccaccaag 339  Q
    |||||||||||||||||||||||||||| || | ||||||| ||||||||| |||||||||| |||| ||||    
T  144986 caacgcttaaccaccatccggtagaagccaatatccacaaagccataaaaggcacaacgcttaaccatcaag 145057  T

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Target: scaffold0001; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 135 - 187
Target Start/End: Original strand, 144802 - 144855
Alignment:
Q  135 tatctctaatagtcccccgcaagttggaaggtgttc-acaacacttccaacttg 187  Q
    |||||||||||||||||| ||||||||||||||||| | |||||||||||||||    
T  144802 tatctctaatagtccccctcaagttggaaggtgttcaaaaacacttccaacttg 144855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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