View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17886_low_17 (Length: 368)
Name: NF17886_low_17
Description: NF17886
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17886_low_17 |
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Alignment Details
Target: chr8 (Bit Score: 141; Significance: 7e-74; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 141; E-Value: 7e-74
Query Start/End: Original strand, 17 - 157
Target Start/End: Complemental strand, 40297404 - 40297264
Alignment:
| Q |
17 |
gtaccaagatccgtaccttctgttgagccagaggagtgtaatagaagctcaaatctaaaacaaggcaagtcaaattagtcataaattgaattgaacaata |
116 |
Q |
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| T |
40297404 |
gtaccaagatccgtaccttctgttgagccagaggagtgtaatagaagctcaaatctaaaacaaggcaagtcaaattagtcataaattgaattgaacaata |
40297305 |
T |
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| Q |
117 |
actatattgttaatttcgtgttaatatttattaaaggtgta |
157 |
Q |
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| T |
40297304 |
actatattgttaatttcgtgttaatatttattaaaggtgta |
40297264 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 136; E-Value: 7e-71
Query Start/End: Original strand, 222 - 365
Target Start/End: Complemental strand, 40297199 - 40297056
Alignment:
| Q |
222 |
aattgatcaagtaaataagaaggcaccagcatggaagaagatgaattcaaaagagcttggatttcgaaattctatgattgctagtccaattaaaaaggtt |
321 |
Q |
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| T |
40297199 |
aattgatcaagtaaataagaaggcaccggcatggaagaagatgaattcaaaagagcttggatttcgaaattccatgattgctagtccaattaaaaaggtt |
40297100 |
T |
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| Q |
322 |
ctcaacatgttgaagaaaaagggtatgttttgttgcgtctctgc |
365 |
Q |
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| T |
40297099 |
ctcaacatgttgaagaaaaagggtatgttttgttgcgtctctgc |
40297056 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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