View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17886_low_18 (Length: 357)
Name: NF17886_low_18
Description: NF17886
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17886_low_18 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 172; Significance: 2e-92; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 139 - 350
Target Start/End: Complemental strand, 44310721 - 44310509
Alignment:
| Q |
139 |
ttttggattatgcgcaggctcaaggtgaagagagaaaatagacatgaataaatgttgttgcaagtggactggagtgatacaatctacaaagaaataagta |
238 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44310721 |
ttttggattatgcgcaggctcaaggtgaagagagaaaatagacatgaataaatgttgttgcaagtggactggagtgatacaatctacaaagaaataagta |
44310622 |
T |
|
| Q |
239 |
cattgaacaatactacaatatttgaatg-ttcnnnnnnnatttgtttactggtgttgtttatagtttttagcattgtgattcaagatgattgtttatttc |
337 |
Q |
| |
|
|||||||||||||||||||||||||||| || |||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44310621 |
cattgaacaatactacaatatttgaatgtttttttttttatttttttactggtgttatttatagtttttagcattgtgattcaagatgattgtttatttc |
44310522 |
T |
|
| Q |
338 |
aaactttcattgt |
350 |
Q |
| |
|
||||||||||||| |
|
|
| T |
44310521 |
aaactttcattgt |
44310509 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 7 - 93
Target Start/End: Complemental strand, 44310797 - 44310711
Alignment:
| Q |
7 |
gttgcattgccaaaaagatataaatattgacctacatattagattgccaactaaaaagctttcaactcactgcaatttttggattat |
93 |
Q |
| |
|
||||||||||||||||||||||||| ||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44310797 |
gttgcattgccaaaaagatataaatgttgacttacatattagattttcaactaaaaagctttcaactcactgcaatttttggattat |
44310711 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University