View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17886_low_2 (Length: 560)
Name: NF17886_low_2
Description: NF17886
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17886_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 482; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 482; E-Value: 0
Query Start/End: Original strand, 13 - 539
Target Start/End: Original strand, 40750079 - 40750596
Alignment:
| Q |
13 |
atcatcattcatattcacttgatcatgtttcatcaggtttttccgatgttatacaaatggctcaaactaatactccaatgtcagctactgcacttcttca |
112 |
Q |
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| T |
40750079 |
atcatcattcatattcacttgatcatgtttcatcaggtttttccgatgttatacaaatggctcaaactaatactccaatgtcagctactgcacttcttca |
40750178 |
T |
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| Q |
113 |
gaaagcagctcaaataggttcaacaagaagcagtactaatccttccatttttagtggaagttttggtgtaatgagttcatcctctacacaaacaacgagt |
212 |
Q |
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| T |
40750179 |
gaaagcagctcaaataggttcaacaagaagcagtactaatccttccatatttagtggaagttttggtgtaatgagttcatcctctacacaaacaacgagt |
40750278 |
T |
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| Q |
213 |
ttaaacaaaaaccatgatgaggttaatatggtcattaatcagaaaatgaagcagcatgagaattttgatccaagtagtagtagaagtgcaactatggttg |
312 |
Q |
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| T |
40750279 |
ttaaacaaaaaccatgatgaggttaatatggtcattaatcagaaaatgaagcagcatgagaattttgatccaagtagtagtagaagtgcaactatggttg |
40750378 |
T |
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| Q |
313 |
gtaattctagtgggtttagagattttcttggagtgagtaaccatcaatttctacctcaagagcttgcaaagtttgcttccataaattcaccgatgatgag |
412 |
Q |
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| T |
40750379 |
gtaattctagtgggtttagagattttcttggagtgagtaaccatcaatttctacctcaagagcttgcaaagtttgcttccataaattcaacgatgatgag |
40750478 |
T |
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| Q |
413 |
tttaaatcaattcaatgctgggtgcatcaatgaaaattaattagtccttaattaagtgttgactataaattaattgatatttttggaactgcatgtgaat |
512 |
Q |
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| T |
40750479 |
tttaaatcaattcaatgctgggtgcatcaatgaaaattaattagtccttaattaagtgttgacta-----taattgatatttttggaactgcatgtga-- |
40750571 |
T |
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| Q |
513 |
agatagataatgtttgtgatagtaatg |
539 |
Q |
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| T |
40750572 |
--atagataatgtttgtgatagtaatg |
40750596 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 87 - 150
Target Start/End: Complemental strand, 28495353 - 28495290
Alignment:
| Q |
87 |
ccaatgtcagctactgcacttcttcagaaagcagctcaaataggttcaacaagaagcagtacta |
150 |
Q |
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| T |
28495353 |
ccaatgtcagctactgctcttctgcaaaaagcagctcaaatgggttcaactagaagcaatacta |
28495290 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 88 - 136
Target Start/End: Complemental strand, 50785528 - 50785480
Alignment:
| Q |
88 |
caatgtcagctactgcacttcttcagaaagcagctcaaataggttcaac |
136 |
Q |
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| T |
50785528 |
caatgtcagcaactgcacttcttcagaaagctgctcaaatgggtgcaac |
50785480 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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