View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17886_low_22 (Length: 310)
Name: NF17886_low_22
Description: NF17886
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17886_low_22 |
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Alignment Details
Target: chr4 (Bit Score: 251; Significance: 1e-139; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 1 - 300
Target Start/End: Original strand, 2343880 - 2344184
Alignment:
| Q |
1 |
gcttcaagtcaaattttattcagttattgtgtataaaatccaaaacaaaattattctgtattctaaattaaaactgattttttatgtttttgattgcatc |
100 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| || |
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| T |
2343880 |
gcttcaagtcaagttttattcagttattgtgtataaaatccaaaacaaaattatcatgtattctaaattaaaactgattttttatgtttttgattgc-tc |
2343978 |
T |
|
| Q |
101 |
ttgctata------ataaagaacctttatatcctttctcaagttgtaaaagagttataacttaaaatgcttgtacgcttccaagaagagatacagtggtt |
194 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
2343979 |
ttgctataaatataataaagaacctttatatcctttctcaagttgtaaaagagttataacttaaattgcttgtacgcttccaagaagagatacagtggtt |
2344078 |
T |
|
| Q |
195 |
tggtttcaaacttcacttattatgattctatttaagtatcagtgaaaatggtttcacaaaatatattgaatttagttaatgattatgaacctaattagtt |
294 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
2344079 |
tggtttcaaacttcacttattatgattctatttaagtattagtgaaaatggtttcacaaaatatattgaatttagttaatgattatgaaactaattagtt |
2344178 |
T |
|
| Q |
295 |
cctttg |
300 |
Q |
| |
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|||||| |
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|
| T |
2344179 |
cctttg |
2344184 |
T |
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