View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17886_low_23 (Length: 304)
Name: NF17886_low_23
Description: NF17886
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17886_low_23 |
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Alignment Details
Target: chr3 (Bit Score: 206; Significance: 1e-112; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 17 - 281
Target Start/End: Original strand, 32846484 - 32846751
Alignment:
| Q |
17 |
cataggaacaaaaaatggaacatta---gttcatagttttgaagaaataagaaggcttcagcagatgttgcaagtgtgatgctacaaagccataggacat |
113 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||| |||||| | || |||| ||||||||||||||||||||||||||||||||| || |
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| T |
32846484 |
cataggaacaaaaaatggaacattattagttcatagttttgaagaagtaagaaagtttgagcaaatgttgcaagtgtgatgctacaaagccataggaaat |
32846583 |
T |
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| Q |
114 |
atgagaattttgaaaggagatggtttgataagagagtgaagttggtgcattcattgacagggtcatggttttgcttggatgtagcttccatattattgtg |
213 |
Q |
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|||||| ||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32846584 |
atgagagttttgaaaggagatggtttgaaaaaagagtgaagttggtgcattcattgacagggtcatggttttgcttggatgtagcttccatattattgtg |
32846683 |
T |
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| Q |
214 |
gcactaatggtgataggttttaaaatctatgctctagaggctacaaataaatagatgagagatggtcc |
281 |
Q |
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| T |
32846684 |
gcactaatgatgataggttttaaaatctatgccctagaggctacaaataaatacatgagagatggtcc |
32846751 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 17 - 272
Target Start/End: Original strand, 32833203 - 32833461
Alignment:
| Q |
17 |
cataggaacaaaaaatggaacatta---gttcatagttttgaagaaataagaaggcttcagcagatgttgcaagtgtgatgctacaaagccataggacat |
113 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||| |||||| |||| |||| ||||||||||||||||||||||||||||||||| || |
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| T |
32833203 |
cataggaacaaaaaatggaacattattagttcatagttttgaagaagtaagaaagcttgagcaaatgttgcaagtgtgatgctacaaagccataggaaat |
32833302 |
T |
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| Q |
114 |
atgagaattttgaaaggagatggtttgataagagagtgaagttggtgcattcattgacagggtcatggttttgcttggatgtagcttccatattattgtg |
213 |
Q |
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| T |
32833303 |
atgagagttttgaaaggagatggtttgaaaaaagagtgaagttggtgcattcattgacagggtcatggttttgcttggatgtagcttccatattattgtg |
32833402 |
T |
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| Q |
214 |
gcactaatggtgataggttttaaaatctatgctctagaggctacaaataaatagatgag |
272 |
Q |
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| T |
32833403 |
gcactaatgatgataggttttaaaatctatgccctacaggctacaaataaatacatgag |
32833461 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 151; Significance: 6e-80; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 151; E-Value: 6e-80
Query Start/End: Original strand, 17 - 277
Target Start/End: Complemental strand, 17931440 - 17931191
Alignment:
| Q |
17 |
cataggaacaaaaaatggaacattagttcatagttttgaagaaataagaaggcttcagcagatgttgcaagtgtgatgctacaaagccataggacatatg |
116 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||| | |||| |||| |||| ||||||||||| ||||||||||||| |||||| ||||| |
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| T |
17931440 |
cataggaacaaaaaatggaagattagttcatagttttgaagaagtgagaaagcttgagcaaatgttgcaagtatgatgctacaaaggaataggaaatatg |
17931341 |
T |
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| Q |
117 |
agaattttgaaaggagatggtttgataagagagtgaagttggtgcattcattgacagggtcatggttttgcttggatgtagcttccatattattgtggca |
216 |
Q |
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| T |
17931340 |
agagttttgaaaggagatggtttgataagagagtgaagttggtgcattcattgacagggtcatggcttttcttggaagtggcttccat-----------a |
17931252 |
T |
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| Q |
217 |
ctaatggtgataggttttaaaatctatgctctagaggctacaaataaatagatgagagatg |
277 |
Q |
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|||||||||||| |||||||||||||||| |||||||||||||||||||| |||||||||| |
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| T |
17931251 |
ctaatggtgataagttttaaaatctatgccctagaggctacaaataaatacatgagagatg |
17931191 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 88; Significance: 3e-42; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 26 - 204
Target Start/End: Complemental strand, 46187956 - 46187775
Alignment:
| Q |
26 |
aaaaaatggaacattagttcatagttttgaagaaataagaaggcttcagcagatgttgcaagtgtgatgctacaaagccataggacatatgagaattttg |
125 |
Q |
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|||| |||||||||| ||||||||||||| ||||||||||| |||||| || ||||||| ||||| |||||| |||||||||||| || |||||| | || |
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| T |
46187956 |
aaaacatggaacattggttcatagttttggagaaataagaatgcttcaacaaatgttgctagtgttatgctagaaagccataggaaatgtgagaagtgtg |
46187857 |
T |
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| Q |
126 |
aaaggagatggtttgataagagagtgaagttggtgcattcattgac---agggtcatggttttgcttggatgtagcttccat |
204 |
Q |
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||| ||||| ||||||||||||||||||||||||||||||||||| || | |||||||| ||||||| ||||||||||| |
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| T |
46187856 |
aaacgagatagtttgataagagagtgaagttggtgcattcattgaagatagagacatggtttggcttggaagtagcttccat |
46187775 |
T |
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