View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17886_low_24 (Length: 295)
Name: NF17886_low_24
Description: NF17886
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17886_low_24 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 290; Significance: 1e-163; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 2 - 295
Target Start/End: Complemental strand, 32753052 - 32752759
Alignment:
| Q |
2 |
ttacttccaaaacattatatttcactttgcatatataatggttgggaacacactagtcgataagattgatttagtatttgtgtcatgtcttttgacaact |
101 |
Q |
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| T |
32753052 |
ttacttccaaaacattatatttcactttgcatatataatggttgggaacacactagtcgataagattgatttagtatttgtgtcatgtcttttgacaact |
32752953 |
T |
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| Q |
102 |
ttattgcatgtgtgcaaaaacagatggagcaatacactaacatttgtctatccaaagtaaacatacctggcaaacttgatgtagaagctgagtgtatgtt |
201 |
Q |
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| T |
32752952 |
ttattgcatgtgtgcaaaaacagatggagcaatacactaacatttgtctatccaaagtaaacatacctggcaaacttgatgtagaagctgagtgtatgtt |
32752853 |
T |
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| Q |
202 |
aaagtagcatcaacaccaagttcattcccttcccaataaaaggccactttgtcacctagtccagcttcaacatttctatccacacaattataac |
295 |
Q |
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| T |
32752852 |
aaagtagcatcaacaccaagttcattcccttcccaataaaaggccactttgtcacctagtccagcttcaacatttctatccaaacaattataac |
32752759 |
T |
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Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 56
Target Start/End: Complemental strand, 35827649 - 35827596
Alignment:
| Q |
3 |
tacttccaaaacattatatttcactttgcatatataatggttgggaacacacta |
56 |
Q |
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|||| |||||||||||||||||||||||||| ||| ||||| || | ||||||| |
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| T |
35827649 |
tactcccaaaacattatatttcactttgcatttatgatggtgggaagcacacta |
35827596 |
T |
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