View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17886_low_26 (Length: 278)

Name: NF17886_low_26
Description: NF17886
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17886_low_26
NF17886_low_26
[»] chr3 (11 HSPs)
chr3 (1-261)||(31093727-31093987)
chr3 (1-259)||(13002927-13003185)
chr3 (1-259)||(31252401-31252659)
chr3 (8-261)||(16163089-16163342)
chr3 (121-256)||(27229091-27229227)
chr3 (7-259)||(25658507-25658759)
chr3 (7-259)||(25664912-25665164)
chr3 (7-259)||(25671317-25671569)
chr3 (7-259)||(25677722-25677974)
chr3 (7-259)||(25684398-25684650)
chr3 (9-241)||(27206446-27206680)
[»] chr2 (4 HSPs)
chr2 (7-191)||(33120609-33120792)
chr2 (7-191)||(33130352-33130535)
chr2 (7-73)||(19112443-19112509)
chr2 (12-73)||(19117257-19117318)
[»] scaffold0029 (2 HSPs)
scaffold0029 (7-191)||(18364-18547)
scaffold0029 (7-191)||(43376-43559)


Alignment Details
Target: chr3 (Bit Score: 209; Significance: 1e-114; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 261
Target Start/End: Original strand, 31093727 - 31093987
Alignment:
1 tccacgcaccatattgttgcggtgcttgatataaacgtttggcatcgttgtaatagtcaaaatatactatcttagcttgagggttgtttctgttttatta 100  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
31093727 tccacgcaccatattgttgtggtgcttgatataaacgtttggcatcgttgtaatagtcaaaatatactatcttagcttgaggg-tgtttctgttttatta 31093825  T
101 tctctaaggannnnnnnagctgctcattaaagtattcgatgaaagtgttgtaagctatcaaacatccaaattcatcatagtcttctttcttct-actaat 199  Q
    |||||| |||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
31093826 tctctatggatttttttagctgctcattaaagtattcgatgaaagtgttgtaagctatcaaacatccaaattcatcatagtcttctttcttctgactaat 31093925  T
200 cttttttgacaatatgtcagtattacaccctattggaaagtttcctggaatcactagctcaa 261  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||    
31093926 cttttttgacaatatgtcagtattacaccctattggaaagtttcctgaaaccactagctcaa 31093987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 1 - 259
Target Start/End: Original strand, 13002927 - 13003185
Alignment:
1 tccacgcaccatattgttgcggtgcttgatataaacgtttggcatcgttgtaatagtcaaaatatactatcttagcttgagggttgtttctgttttatta 100  Q
    ||||| ||||||||||||| |||| |||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||     
13002927 tccacacaccatattgttgtggtgtttgatataaacgcttggcatcgttgtaataatcaaaatatactatcttagcttgagggt-gtttctgttttattg 13003025  T
101 tctctaaggannnnnnnagctgctcattaaagtattcgatgaaagtgttgtaagctatcaaacatccaaattcatcatagtcttctttcttct-actaat 199  Q
    |||||| |||       |||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
13003026 tctctatggatttttttagctgctcattaaagtattcaatgagagtgttgtaagctatcaaacatccaaattcatcatagtcttctttcttctgactaat 13003125  T
200 cttttttgacaatatgtcagtattacaccctattggaaagtttcctggaatcactagctc 259  Q
    |||||||||||||||||||||||||||||| ||||||||||| ||||||| |||||||||    
13003126 cttttttgacaatatgtcagtattacaccccattggaaagttccctggaaccactagctc 13003185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 171; E-Value: 7e-92
Query Start/End: Original strand, 1 - 259
Target Start/End: Complemental strand, 31252659 - 31252401
Alignment:
1 tccacgcaccatattgttgcggtgcttgatataaacgtttggcatcgttgtaatagtcaaaatatactatcttagcttgagggttgtttctgttttatta 100  Q
    ||||| ||||||| ||||| |||| |||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||     
31252659 tccacacaccatactgttgaggtgtttgatataaacgcttggcatcgttgtaataatcaaaatatactatcttagcttgagggt-gtttctgttttattg 31252561  T
101 tctctaaggannnnnnnagctgctcattaaagtattcgatgaaagtgttgtaagctatcaaacatccaaattcatcatagtcttctttcttct-actaat 199  Q
    |||||| |||       |||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
31252560 tctctatggatttttttagctgctcattaaagtattcaatgagagtgttgtaagctatcaaacatccaaattcatcatagtcttctttcttctgactaat 31252461  T
200 cttttttgacaatatgtcagtattacaccctattggaaagtttcctggaatcactagctc 259  Q
    |||||||||||||||||||||||||||||| ||||||||||| ||||||| |||||||||    
31252460 cttttttgacaatatgtcagtattacaccccattggaaagttccctggaaccactagctc 31252401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 8 - 261
Target Start/End: Complemental strand, 16163342 - 16163089
Alignment:
8 accatattgttgcggtgcttgatataaacgtttggcatcgttgtaatagtcaaaatatactatcttagcttgagggttgtttctgttttattatctctaa 107  Q
    |||||||||||| ||||||| |||||||||||||||||||||||| ||||||||||||| ||||||||||||||| | |||||||   || | ||||||     
16163342 accatattgttgtggtgcttcatataaacgtttggcatcgttgtagtagtcaaaatatattatcttagcttgaggat-gtttctgccgtaatgtctctat 16163244  T
108 ggannnnnnnagctgctcattaaagtattcgatgaaagtgttgtaagctatcaaacatccaaattcatcatagtcttctttcttct-actaatctttttt 206  Q
    |||       || ||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||| || |||||||| |  ||||||||||||    
16163243 ggatttttttagttgctcattaaagtattcgatgaaagagttgtaagctattaaacatccaaattcatcataatcctctttcttttggctaatctttttt 16163144  T
207 gacaatatgtcagtattacaccctattggaaagtttcctggaatcactagctcaa 261  Q
    | ||||||||||  |||||| || ||||||||||| ||||||| |||||||||||    
16163143 gtcaatatgtcaacattacatcccattggaaagttacctggaaccactagctcaa 16163089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 121 - 256
Target Start/End: Complemental strand, 27229227 - 27229091
Alignment:
121 tgctcattaaagtattcgatgaaagtgttgtaagctatcaaacatccaaattcatcatagtcttctttcttct-actaatcttttttgacaatatgtcag 219  Q
    ||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||| |||| ||    |  |||||||| |      
27229227 tgctcattatagtattcgatgaaagtgttgtaagttatcaaacatccaaattcatcataatcttctttcttctgactattcaccctccacaatatgccga 27229128  T
220 tattacaccctattggaaagtttcctggaatcactag 256  Q
     ||||||||||||||||||||||||||||| ||||||    
27229127 cattacaccctattggaaagtttcctggaaccactag 27229091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 7 - 259
Target Start/End: Complemental strand, 25658759 - 25658507
Alignment:
7 caccatattgttgcggtgcttgatataaacgtttggcatcgttgtaatagtcaaaatatactatcttagcttgagggttgtttctgttttattatctcta 106  Q
    |||||||||| || |||| ||||||||||||||||  || |||||| ||||||||||||| |||||||||||||||| | ||| ||| ||| | ||||||    
25658759 caccatattgctgtggtgtttgatataaacgtttgagattgttgtagtagtcaaaatatattatcttagcttgaggg-tatttatgtcttaatgtctcta 25658661  T
107 aggannnnnnnagctgctcattaaagtattcgatgaaagtgttgtaagctatcaaacatccaaattcatcatagtcttctttcttc-tactaatcttttt 205  Q
      ||       || || |||||  ||||||||  |||||  |||||||||||||  || |||| |||||||||||||||||||||| ||||||||   ||    
25658660 tagaatttttaagttgttcattgtagtattcggcgaaagcattgtaagctatcaggcacccaagttcatcatagtcttctttcttcgtactaatcaaatt 25658561  T
206 tgacaatatgtcagtattacaccctattggaaagtttcctggaatcactagctc 259  Q
    || ||| |   ||| ||||||||| |||||||||||||| ||||||||||||||    
25658560 tgtcaacacaccagcattacacccaattggaaagtttccaggaatcactagctc 25658507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 7 - 259
Target Start/End: Complemental strand, 25665164 - 25664912
Alignment:
7 caccatattgttgcggtgcttgatataaacgtttggcatcgttgtaatagtcaaaatatactatcttagcttgagggttgtttctgttttattatctcta 106  Q
    |||||||||| || |||| ||||||||||||||||  || |||||| ||||||||||||| |||||||||||||||| | ||| ||| ||| | ||||||    
25665164 caccatattgctgtggtgtttgatataaacgtttgagattgttgtagtagtcaaaatatattatcttagcttgaggg-tatttatgtcttaatgtctcta 25665066  T
107 aggannnnnnnagctgctcattaaagtattcgatgaaagtgttgtaagctatcaaacatccaaattcatcatagtcttctttcttc-tactaatcttttt 205  Q
      ||       || || |||||  ||||||||  |||||  |||||||||||||  || |||| |||||||||||||||||||||| ||||||||   ||    
25665065 tagaatttttaagttgttcattgtagtattcggcgaaagcattgtaagctatcaggcacccaagttcatcatagtcttctttcttcgtactaatcaaatt 25664966  T
206 tgacaatatgtcagtattacaccctattggaaagtttcctggaatcactagctc 259  Q
    || ||| |   ||| ||||||||| |||||||||||||| ||||||||||||||    
25664965 tgtcaacacaccagcattacacccaattggaaagtttccaggaatcactagctc 25664912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 7 - 259
Target Start/End: Complemental strand, 25671569 - 25671317
Alignment:
7 caccatattgttgcggtgcttgatataaacgtttggcatcgttgtaatagtcaaaatatactatcttagcttgagggttgtttctgttttattatctcta 106  Q
    |||||||||| || |||| ||||||||||||||||  || |||||| ||||||||||||| |||||||||||||||| | ||| ||| ||| | ||||||    
25671569 caccatattgctgtggtgtttgatataaacgtttgagattgttgtagtagtcaaaatatattatcttagcttgaggg-tatttatgtcttaatgtctcta 25671471  T
107 aggannnnnnnagctgctcattaaagtattcgatgaaagtgttgtaagctatcaaacatccaaattcatcatagtcttctttcttc-tactaatcttttt 205  Q
      ||       || || |||||  ||||||||  |||||  |||||||||||||  || |||| |||||||||||||||||||||| ||||||||   ||    
25671470 tagaatttttaagttgttcattgtagtattcggcgaaagcattgtaagctatcaggcacccaagttcatcatagtcttctttcttcgtactaatcaaatt 25671371  T
206 tgacaatatgtcagtattacaccctattggaaagtttcctggaatcactagctc 259  Q
    || ||| |   ||| ||||||||| |||||||||||||| ||||||||||||||    
25671370 tgtcaacacaccagcattacacccaattggaaagtttccaggaatcactagctc 25671317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 7 - 259
Target Start/End: Complemental strand, 25677974 - 25677722
Alignment:
7 caccatattgttgcggtgcttgatataaacgtttggcatcgttgtaatagtcaaaatatactatcttagcttgagggttgtttctgttttattatctcta 106  Q
    |||||||||| || |||| ||||||||||||||||  || |||||| ||||||||||||| |||||||||||||||| | ||| ||| ||| | ||||||    
25677974 caccatattgctgtggtgtttgatataaacgtttgagattgttgtagtagtcaaaatatattatcttagcttgaggg-tatttatgtcttaatgtctcta 25677876  T
107 aggannnnnnnagctgctcattaaagtattcgatgaaagtgttgtaagctatcaaacatccaaattcatcatagtcttctttcttc-tactaatcttttt 205  Q
      ||       || || |||||  ||||||||  |||||  |||||||||||||  || |||| |||||||||||||||||||||| ||||||||   ||    
25677875 tagaatttttaagttgttcattgtagtattcggcgaaagcattgtaagctatcaggcacccaagttcatcatagtcttctttcttcgtactaatcaaatt 25677776  T
206 tgacaatatgtcagtattacaccctattggaaagtttcctggaatcactagctc 259  Q
    || ||| |   ||| ||||||||| |||||||||||||| ||||||||||||||    
25677775 tgtcaacacaccagcattacacccaattggaaagtttccaggaatcactagctc 25677722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 7 - 259
Target Start/End: Complemental strand, 25684650 - 25684398
Alignment:
7 caccatattgttgcggtgcttgatataaacgtttggcatcgttgtaatagtcaaaatatactatcttagcttgagggttgtttctgttttattatctcta 106  Q
    |||||||||| || |||| ||||||||||||||||  || |||||| ||||||||||||| |||||||||||||||| | ||| ||| ||| | ||||||    
25684650 caccatattgctgtggtgtttgatataaacgtttgagattgttgtagtagtcaaaatatattatcttagcttgaggg-tatttatgtcttaatgtctcta 25684552  T
107 aggannnnnnnagctgctcattaaagtattcgatgaaagtgttgtaagctatcaaacatccaaattcatcatagtcttctttcttc-tactaatcttttt 205  Q
      ||       || || |||||  ||||||||  |||||  |||||||||||||  || |||| |||||||||||||||||||||| ||||||||   ||    
25684551 tagaatttttaagttgttcattgtagtattcggcgaaagcattgtaagctatcaggcacccaagttcatcatagtcttctttcttcgtactaatcaaatt 25684452  T
206 tgacaatatgtcagtattacaccctattggaaagtttcctggaatcactagctc 259  Q
    || ||| |   ||| ||||||||| |||||||||||||| ||||||||||||||    
25684451 tgtcaacacaccagcattacacccaattggaaagtttccaggaatcactagctc 25684398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 9 - 241
Target Start/End: Complemental strand, 27206680 - 27206446
Alignment:
9 ccatattgttgcggtgcttgatataaacgtttggcatcgttgtaatagtcaaaatatactatcttagcttgagggttgtttctgttttattatctctaag 108  Q
    ||||||||||  |||||||| |||||||||||| |||| ||||||  |||||| |||||||||||||||||||||| |||| ||  ||| | ||| || |    
27206680 ccatattgttctggtgcttggtataaacgtttgacatcattgtaaacgtcaaagtatactatcttagcttgagggt-gtttatgccttagtgtctttatg 27206582  T
109 gannnnnnnagctgctc--attaaagtattcgatgaaagtgttgtaagctatcaaacatccaaattcatcatagtcttctttcttct-actaatcttttt 205  Q
    ||       || |  |   |||||||||||  ||||||| |||||| ||||||||||||||||||| |||||||||||||||||||| ||||||||| ||    
27206581 gattttttaagttttttttattaaagtattttatgaaagagttgtatgctatcaaacatccaaatttatcatagtcttctttcttctgactaatcttatt 27206482  T
206 tgacaatatgtcagtattacaccctattggaaagtt 241  Q
    |||||||| || || | |||| |||||||| |||||    
27206481 tgacaataagtgagcagtacatcctattgggaagtt 27206446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 60; Significance: 1e-25; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 7 - 191
Target Start/End: Original strand, 33120609 - 33120792
Alignment:
7 caccatattgttgcggtgcttgatataaacgtttggcatcgttgtaatagtcaaaatatactatcttagcttgagggttgtttctgttttattatctcta 106  Q
    |||||||||||||||||| ||||||||||||||||||||| || || |||||||| |||| ||||||| ||| |||| || |||||| ||| | ||||||    
33120609 caccatattgttgcggtgtttgatataaacgtttggcatcattatagtagtcaaagtatattatcttaacttcaggg-tgcttctgtcttagtgtctcta 33120707  T
107 aggannnnnnnagctgctcattaaagtattcgatgaaagtgttgtaagctatcaaacatccaaattcatcatagtcttctttctt 191  Q
      ||       || ||| |||||||||| ||||  ||| | ||||||||||| || || ||||||||||||||||||||||||||    
33120708 tagaattttttagttgcccattaaagtactcgactaaattattgtaagctattaagcacccaaattcatcatagtcttctttctt 33120792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 7 - 191
Target Start/End: Original strand, 33130352 - 33130535
Alignment:
7 caccatattgttgcggtgcttgatataaacgtttggcatcgttgtaatagtcaaaatatactatcttagcttgagggttgtttctgttttattatctcta 106  Q
    |||||||||||||||||| ||||||||||||||||||||| || || |||||||| |||| ||||||| ||| |||| || |||||| ||| | ||||||    
33130352 caccatattgttgcggtgtttgatataaacgtttggcatcattatagtagtcaaagtatattatcttaacttcaggg-tgcttctgtcttagtgtctcta 33130450  T
107 aggannnnnnnagctgctcattaaagtattcgatgaaagtgttgtaagctatcaaacatccaaattcatcatagtcttctttctt 191  Q
      ||       || ||| |||||||||| ||||  ||| | ||||||||||| || || ||||||||||||||||||||||||||    
33130451 tagaattttttagttgcccattaaagtactcgactaaattattgtaagctattaagcacccaaattcatcatagtcttctttctt 33130535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 73
Target Start/End: Complemental strand, 19112509 - 19112443
Alignment:
7 caccatattgttgcggtgcttgatataaacgtttggcatcgttgtaatagtcaaaatatactatctt 73  Q
    |||| |||||||  |||||||  ||||||||||||||| | ||||| ||||||||||||| ||||||    
19112509 caccgtattgttctggtgcttcgtataaacgtttggcagcattgtagtagtcaaaatatattatctt 19112443  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 12 - 73
Target Start/End: Complemental strand, 19117318 - 19117257
Alignment:
12 tattgttgcggtgcttgatataaacgtttggcatcgttgtaatagtcaaaatatactatctt 73  Q
    |||||||  |||||||  ||||||||||||||| | ||||| ||||||||||||| ||||||    
19117318 tattgttctggtgcttcgtataaacgtttggcagcattgtagtagtcaaaatatattatctt 19117257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029 (Bit Score: 56; Significance: 3e-23; HSPs: 2)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 7 - 191
Target Start/End: Original strand, 18364 - 18547
Alignment:
7 caccatattgttgcggtgcttgatataaacgtttggcatcgttgtaatagtcaaaatatactatcttagcttgagggttgtttctgttttattatctcta 106  Q
    |||||||||||||||||| ||||||||||||||||||||| || || |||||||| |||| ||||||| ||| |||| || |||||| ||| | ||||||    
18364 caccatattgttgcggtgtttgatataaacgtttggcatcattatagtagtcaaagtatattatcttaacttcaggg-tgcttctgtcttagtgtctcta 18462  T
107 aggannnnnnnagctgctcattaaagtattcgatgaaagtgttgtaagctatcaaacatccaaattcatcatagtcttctttctt 191  Q
      ||       || ||| | |||||||| || || ||| | ||||||||||| || || ||||||||||||||||||||||||||    
18463 tagaattttttagttgcccgttaaagtactctattaaattattgtaagctattaagcacccaaattcatcatagtcttctttctt 18547  T

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Target: scaffold0029; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 7 - 191
Target Start/End: Original strand, 43376 - 43559
Alignment:
7 caccatattgttgcggtgcttgatataaacgtttggcatcgttgtaatagtcaaaatatactatcttagcttgagggttgtttctgttttattatctcta 106  Q
    |||||||||||||||||| ||||||||||| ||||||||| || || |||||||| |||| ||||||| ||| |||| || |||||| ||| | ||||||    
43376 caccatattgttgcggtgtttgatataaacatttggcatcattatagtagtcaaagtatattatcttaacttcaggg-tgcttctgtcttagtgtctcta 43474  T
107 aggannnnnnnagctgctcattaaagtattcgatgaaagtgttgtaagctatcaaacatccaaattcatcatagtcttctttctt 191  Q
      ||       || ||| | |||||||| || || ||| | ||||||||||| || || ||||||||||||||||||||||||||    
43475 tagaattttttagttgcccgttaaagtactctattaaattattgtaagctattaagcacccaaattcatcatagtcttctttctt 43559  T

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