View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17886_low_27 (Length: 249)
Name: NF17886_low_27
Description: NF17886
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17886_low_27 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 165; Significance: 2e-88; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 17 - 249
Target Start/End: Original strand, 11411981 - 11412213
Alignment:
| Q |
17 |
aattcaaatcatcgtcagggaagaatattgaaaagtttataacnnnnnnnnnnnnnnnnnnnngcatcccttgaattaatgatatgttgatgtacattct |
116 |
Q |
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| T |
11411981 |
aattcaaatcatcgtcagggaagaatattgaaaagtttataacaaaaaattaaaataaataaagcatcccttgaattaatgatatgttgatgtacattct |
11412080 |
T |
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| Q |
117 |
tgaaatattagagaaattctttctttattaagctgaaactaaatcattgtaggcctgacatcaagctttggctcaatataccaagtaagactaaaataag |
216 |
Q |
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| T |
11412081 |
tgaaatattagagaaattctttctttattaagctgaaactaaatcattgtaggcctggcatcaagctttggctcaatataccaagtgagactaaaataag |
11412180 |
T |
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| Q |
217 |
tgcatgtttgaaagagagttgagatgggtaaaa |
249 |
Q |
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| T |
11412181 |
tgcatgtttgaaagagagttgagatgggtaaaa |
11412213 |
T |
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Target: chr3 (Bit Score: 74; Significance: 5e-34; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 80 - 222
Target Start/End: Complemental strand, 29521752 - 29521608
Alignment:
| Q |
80 |
gcatcccttgaattaatgatatgttgatgtacattcttgaaatattagagaaattctttctttattaagctgaaactaaatcattgtaggcc--tgacat |
177 |
Q |
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|||||||||||| ||||||| || |||||| ||||||||||||||||||||||| ||||||||| ||||||| |||||||||||||||| | |||| |
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| T |
29521752 |
gcatcccttgaactaatgatgtgcagatgtagattcttgaaatattagagaaattatttctttatgaagctgagactaaatcattgtaggacatcaacat |
29521653 |
T |
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| Q |
178 |
caagctttggctcaatataccaagtaagactaaaataagtgcatg |
222 |
Q |
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| T |
29521652 |
caagctttagcttaatatatcaagtgagactaaaataagtgcatg |
29521608 |
T |
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