View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17886_low_3 (Length: 559)

Name: NF17886_low_3
Description: NF17886
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17886_low_3
NF17886_low_3
[»] chr5 (7 HSPs)
chr5 (100-552)||(16807415-16807869)
chr5 (50-110)||(16807323-16807383)
chr5 (390-483)||(4872587-4872680)
chr5 (390-489)||(9726069-9726168)
chr5 (428-489)||(35679242-35679303)
chr5 (390-438)||(17550863-17550911)
chr5 (390-555)||(25688964-25689128)
[»] chr4 (5 HSPs)
chr4 (393-489)||(8029661-8029757)
chr4 (389-489)||(19102661-19102760)
chr4 (390-489)||(19107291-19107390)
chr4 (390-477)||(12875110-12875197)
chr4 (390-489)||(47244824-47244923)
[»] chr8 (2 HSPs)
chr8 (390-489)||(22714311-22714410)
chr8 (389-489)||(7002330-7002430)
[»] chr1 (6 HSPs)
chr1 (390-489)||(23192142-23192241)
chr1 (390-483)||(16036306-16036399)
chr1 (390-489)||(39587674-39587773)
chr1 (391-489)||(40166644-40166742)
chr1 (391-489)||(12260671-12260768)
chr1 (405-474)||(46697032-46697101)
[»] scaffold0009 (1 HSPs)
scaffold0009 (390-489)||(147707-147806)
[»] chr2 (4 HSPs)
chr2 (390-489)||(28603780-28603879)
chr2 (390-489)||(42925973-42926072)
chr2 (415-489)||(31327433-31327507)
chr2 (415-489)||(31334154-31334228)
[»] chr3 (4 HSPs)
chr3 (391-489)||(29350921-29351019)
chr3 (390-489)||(2207115-2207214)
chr3 (436-489)||(3656591-3656644)
chr3 (389-489)||(13155916-13156016)
[»] chr7 (5 HSPs)
chr7 (415-489)||(13313628-13313702)
chr7 (390-489)||(26286460-26286559)
chr7 (422-489)||(30258783-30258850)
chr7 (391-438)||(15233222-15233269)
chr7 (390-439)||(4580210-4580259)
[»] scaffold0054 (1 HSPs)
scaffold0054 (390-489)||(26136-26234)
[»] chr6 (4 HSPs)
chr6 (390-489)||(12689666-12689765)
chr6 (390-489)||(19674467-19674566)
chr6 (429-489)||(22610193-22610253)
chr6 (423-489)||(12799302-12799368)
[»] scaffold0002 (1 HSPs)
scaffold0002 (389-489)||(150972-151072)


Alignment Details
Target: chr5 (Bit Score: 292; Significance: 1e-164; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 100 - 552
Target Start/End: Original strand, 16807415 - 16807869
Alignment:
Q  100 tatatatatatcacatgcatgacaacaacgctgtcgtctagctggacctaggccaaaaagnnnnnnnnnnnn---agcagtgctattaagcacgacacaa 196  Q
    ||||||||||||||| ||||||||||||||| ||||||||||||||||| ||||||||||               ||||||||||||||||| |||||||    
T  16807415 tatatatatatcacacgcatgacaacaacgccgtcgtctagctggacctgggccaaaaagtttttttttttttttagcagtgctattaagcatgacacaa 16807514  T
Q  197 aaaatcaacgacaaacccacgacttctcaaattagtggatgaaaaacaaaacatggaggagagagaataaaagaagctttgtaccgtttgcatccaagg- 295  Q
    |||  ||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  16807515 aaac-caacgacaaacccacaacttctcaaattagtggatgacaaacaaaacatggaggagagagaataaaagaagctttgtaccgtttgcatccaaggg 16807613  T
Q  296 ttgtaaagcgtcgtgctgttttcatgcttgtttgttgtcgtgccatcaagcaatattcnnnnnnnnnatcacttaaaaattcttcttattcgacgtttgt 395  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||         |||||||||||||||||||||||||||||||||    
T  16807614 ttgtaaagcgtcgtgctgttttcatgcttgtttgttgtcgtgccatcaagca-tattctttttttttatcacttaaaaattcttcttattcgacgtttgt 16807712  T
Q  396 tacttgaactgatctgcgagttgcttgatttctaagtttacttaaatcttaagtttcttcaatttagttacaaactctccctataaaatgagagggctcg 495  Q
    |||||||||||||| |||||||||||||||| ||||||||||||| ||||||||||||||| |||||||||||||| |||||||||||||||||||||||    
T  16807713 tacttgaactgatccgcgagttgcttgatttttaagtttacttaattcttaagtttcttcagtttagttacaaactttccctataaaatgagagggctcg 16807812  T
Q  496 catatttcatttggaacactaaaaataattctaaaacttcgaatatttttcttctct 552  Q
    | |||||||||||||||||| |||| |||||| ||||||||||||||||||||||||    
T  16807813 cgtatttcatttggaacactgaaaagaattctgaaacttcgaatatttttcttctct 16807869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 50 - 110
Target Start/End: Original strand, 16807323 - 16807383
Alignment:
Q  50 gagagaggatagatcatatatattagtagtgtgtagtgcgcgtgtgtgtctatatatatat 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  16807323 gagagaggatagatcatatatattagtagtgtgtagtgcgcgtgtgtgtatatatatatat 16807383  T

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Target: chr5; HSP #3
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 390 - 483
Target Start/End: Complemental strand, 4872680 - 4872587
Alignment:
Q  390 gtttgttacttgaactgatctgcgagttgcttgatttctaagtttacttaaatcttaagtttcttcaatttagttacaaactctccctataaaa 483  Q
    ||||||||||||| ||| |  | | ||||||| |||| |||||||| |||| |||||||||||| ||| |||||||||||||||||||||||||    
T  4872680 gtttgttacttgagctggtacgtgggttgcttaatttttaagtttatttaattcttaagtttctccaaattagttacaaactctccctataaaa 4872587  T

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Target: chr5; HSP #4
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 390 - 489
Target Start/End: Original strand, 9726069 - 9726168
Alignment:
Q  390 gtttgttacttgaactgatctgcgagttgcttgatttctaagtttacttaaatcttaagtttcttcaatttagttacaaactctccctataaaatgagag 489  Q
    |||||||| |||| ||||| || | ||||||| |||| ||| ||||||||| ||| |||||||| ||| ||||||||||||||||||| ||||| |||||    
T  9726069 gtttgttatttgagctgatatgtgggttgcttaatttttaaatttacttaattctcaagtttctccaaattagttacaaactctccctgtaaaaggagag 9726168  T

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Target: chr5; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 428 - 489
Target Start/End: Original strand, 35679242 - 35679303
Alignment:
Q  428 taagtttacttaaatcttaagtttcttcaatttagttacaaactctccctataaaatgagag 489  Q
    ||||||||||||| |||||||| ||| ||| ||||||||||||||||||||||||| |||||    
T  35679242 taagtttacttaattcttaagtctctccaaattagttacaaactctccctataaaaggagag 35679303  T

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Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 390 - 438
Target Start/End: Original strand, 17550863 - 17550911
Alignment:
Q  390 gtttgttacttgaactgatctgcgagttgcttgatttctaagtttactt 438  Q
    |||||||||||||||| ||||||| ||||||| |||| |||||||||||    
T  17550863 gtttgttacttgaactaatctgcgggttgcttaatttttaagtttactt 17550911  T

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Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 390 - 555
Target Start/End: Original strand, 25688964 - 25689128
Alignment:
Q  390 gtttgttacttgaac-tgatctgcgagttgcttgatttctaagtttacttaaatcttaagtttcttcaatttagttacaaactctccctataaaatgaga 488  Q
    ||||||||||||||| |||| || | ||||||| | || ||||||||||||| | |||||||||| |   || |||||||||| | ||||||||| ||||    
T  25688964 gtttgttacttgaacctgatttgtgggttgcttaacttttaagtttacttaattattaagtttctacggatttgttacaaactttacctataaaaggaga 25689063  T
Q  489 gggctcgcatatttcatttggaacactaaaaataattctaaaacttcgaatatttttcttctctctc 555  Q
      |||||| || ||||||||   |||  ||||  ||||| ||||||| |||  ||||||||||||||    
T  25689064 --gctcgcctagttcatttgactcaccgaaaagtattctgaaacttcaaatccttttcttctctctc 25689128  T

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Target: chr4 (Bit Score: 61; Significance: 6e-26; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 393 - 489
Target Start/End: Original strand, 8029661 - 8029757
Alignment:
Q  393 tgttacttgaactgatctgcgagttgcttgatttctaagtttacttaaatcttaagtttcttcaatttagttacaaactctccctataaaatgagag 489  Q
    |||||||||| |||||||| | ||||||| |||| ||||||||||||| |||||||||||| ||| ||||||||||||||||||||||||| |||||    
T  8029661 tgttacttgagctgatctgtgggttgcttaatttttaagtttacttaattcttaagtttctccaaattagttacaaactctccctataaaaggagag 8029757  T

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Target: chr4; HSP #2
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 389 - 489
Target Start/End: Complemental strand, 19102760 - 19102661
Alignment:
Q  389 cgtttgttacttgaactgatctgcgagttgcttgatttctaagtttacttaaatcttaagtttcttcaatttagttacaaactctccctataaaatgaga 488  Q
    |||||||||||||| ||||| || | ||||||| |||| |||||||||| || |||||||||||| ||| ||||||||||||||||||||||||| ||||    
T  19102760 cgtttgttacttgagctgatatgtgggttgcttaatttttaagtttact-aattcttaagtttctccaaattagttacaaactctccctataaaaggaga 19102662  T

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Target: chr4; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 390 - 489
Target Start/End: Complemental strand, 19107390 - 19107291
Alignment:
Q  390 gtttgttacttgaactgatctgcgagttgcttgatttctaagtttacttaaatcttaagtttcttcaatttagttacaaactctccctataaaatgagag 489  Q
    ||||||||||||| ||||| || | ||||||| |||| ||||||||||||| |||||| ||||| ||| ||||||||||| ||||||||||||| |||||    
T  19107390 gtttgttacttgagctgatatgtgggttgcttaatttttaagtttacttaattcttaaatttctccaaattagttacaaattctccctataaaaggagag 19107291  T

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Target: chr4; HSP #4
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 390 - 477
Target Start/End: Complemental strand, 12875197 - 12875110
Alignment:
Q  390 gtttgttacttgaactgatctgcgagttgcttgatttctaagtttacttaaatcttaagtttcttcaatttagttacaaactctccct 477  Q
    |||||||||||||  |||| || ||||||||| ||||||| |||||||||| ||||||||||||| |  |||||||||||||||||||    
T  12875197 gtttgttacttgagttgatatgtgagttgcttaatttctacgtttacttaattcttaagtttctttatattagttacaaactctccct 12875110  T

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Target: chr4; HSP #5
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 390 - 489
Target Start/End: Complemental strand, 47244923 - 47244824
Alignment:
Q  390 gtttgttacttgaactgatctgcgagttgcttgatttctaagtttacttaaatcttaagtttcttcaatttagttacaaactctccctataaaatgagag 489  Q
    ||||||||||||| || ||||| | ||||||| ||||  |||||||||||| |||||||||||| ||| | ||||||||| ||||||||||||| |||||    
T  47244923 gtttgttacttgagcttatctgtgggttgcttaattttaaagtttacttaattcttaagtttctccaaatcagttacaaattctccctataaaaggagag 47244824  T

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Target: chr8 (Bit Score: 60; Significance: 2e-25; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 390 - 489
Target Start/End: Original strand, 22714311 - 22714410
Alignment:
Q  390 gtttgttacttgaactgatctgcgagttgcttgatttctaagtttacttaaatcttaagtttcttcaatttagttacaaactctccctataaaatgagag 489  Q
    ||||||||||||| |||||||| | ||||||| |||||||||||||||||| |||||||||||| ||| ||| |||||||||| |||||||||| |||||    
T  22714311 gtttgttacttgagctgatctgtgggttgcttaatttctaagtttacttaattcttaagtttctccaaattatttacaaactccccctataaaaggagag 22714410  T

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Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 389 - 489
Target Start/End: Complemental strand, 7002430 - 7002330
Alignment:
Q  389 cgtttgttacttgaactgatctgcgagttgcttgatttctaagtttacttaaatcttaagtttcttcaatttagttacaaactctccctataaaatgaga 488  Q
    |||||||||||||| ||||| || | ||||| | |||| ||||||||||||| | |||||||||| ||| ||| ||||||||| || |||||||| ||||    
T  7002430 cgtttgttacttgagctgatttgtgggttgcgtaatttttaagtttacttaattattaagtttctccaaattatttacaaactatctctataaaaggaga 7002331  T
Q  489 g 489  Q
    |    
T  7002330 g 7002330  T

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Target: chr1 (Bit Score: 60; Significance: 2e-25; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 390 - 489
Target Start/End: Original strand, 23192142 - 23192241
Alignment:
Q  390 gtttgttacttgaactgatctgcgagttgcttgatttctaagtttacttaaatcttaagtttcttcaatttagttacaaactctccctataaaatgagag 489  Q
    ||||||||||||| |||||||| | ||||||| |||| ||||||||||||| |||| ||||||| ||| ||||||||||||||||||||||||| |||||    
T  23192142 gtttgttacttgagctgatctgtgggttgcttaatttttaagtttacttaattctttagtttctccaaattagttacaaactctccctataaaaggagag 23192241  T

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Target: chr1; HSP #2
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 390 - 483
Target Start/End: Complemental strand, 16036399 - 16036306
Alignment:
Q  390 gtttgttacttgaactgatctgcgagttgcttgatttctaagtttacttaaatcttaagtttcttcaatttagttacaaactctccctataaaa 483  Q
    ||||||| ||||| |||||||| | ||||||| |||| ||||||||||||| |||||||||||| ||| |||||||||||||||||||||||||    
T  16036399 gtttgtttcttgagctgatctgtgggttgcttaatttttaagtttacttaattcttaagtttctccaaattagttacaaactctccctataaaa 16036306  T

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Target: chr1; HSP #3
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 390 - 489
Target Start/End: Original strand, 39587674 - 39587773
Alignment:
Q  390 gtttgttacttgaactgatctgcgagttgcttgatttctaagtttacttaaatcttaagtttcttcaatttagttacaaactctccctataaaatgagag 489  Q
    ||||||||||||| ||||| |||| ||||||| |||| ||||||||||||| ||||| |||||| ||| ||||||||||||||||||| ||||| |||||    
T  39587674 gtttgttacttgagctgatatgcgggttgcttaatttttaagtttacttaattcttatgtttctccaaattagttacaaactctccctgtaaaaggagag 39587773  T

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Target: chr1; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 391 - 489
Target Start/End: Complemental strand, 40166742 - 40166644
Alignment:
Q  391 tttgttacttgaactgatctgcgagttgcttgatttctaagtttacttaaatcttaagtttcttcaatttagttacaaactctccctataaaatgagag 489  Q
    |||||||||||| |||||||| | ||||||| |||| ||||||||||||| |||||||||||| ||| ||||||| ||| | |||||| |||| |||||    
T  40166742 tttgttacttgagctgatctgtgggttgcttaatttttaagtttacttaattcttaagtttctccaaattagttataaattatccctaaaaaaggagag 40166644  T

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Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 391 - 489
Target Start/End: Complemental strand, 12260768 - 12260671
Alignment:
Q  391 tttgttacttgaactgatctgcgagttgcttgatttctaagtttacttaaatcttaagtttcttcaatttagttacaaactctccctataaaatgagag 489  Q
    |||||||||||| ||||| || ||||||||| ||||  ||||| |||||| |||||||||| | ||| ||||||||||||||| ||||||||| |||||    
T  12260768 tttgttacttgagctgatatgtgagttgcttaattttgaagttgacttaattcttaagtttttccaaattagttacaaactct-cctataaaaggagag 12260671  T

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Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 405 - 474
Target Start/End: Complemental strand, 46697101 - 46697032
Alignment:
Q  405 tgatctgcgagttgcttgatttctaagtttacttaaatcttaagtttcttcaatttagttacaaactctc 474  Q
    ||||||| | ||||||| ||||||||||| |||||| |||||||||||||||| ||||||| ||||||||    
T  46697101 tgatctgtgtgttgcttaatttctaagttgacttaattcttaagtttcttcaaattagttaaaaactctc 46697032  T

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Target: scaffold0009 (Bit Score: 56; Significance: 6e-23; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 390 - 489
Target Start/End: Original strand, 147707 - 147806
Alignment:
Q  390 gtttgttacttgaactgatctgcgagttgcttgatttctaagtttacttaaatcttaagtttcttcaatttagttacaaactctccctataaaatgagag 489  Q
    ||||||||||||| || ||||| ||||||||| |||| ||||||||| ||| |||||||||||| ||| ||||||||||||||||| ||||||| |||||    
T  147707 gtttgttacttgagcttatctgtgagttgcttaatttttaagtttacctaattcttaagtttctccaaattagttacaaactctccatataaaaggagag 147806  T

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Target: chr2 (Bit Score: 56; Significance: 6e-23; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 390 - 489
Target Start/End: Complemental strand, 28603879 - 28603780
Alignment:
Q  390 gtttgttacttgaactgatctgcgagttgcttgatttctaagtttacttaaatcttaagtttcttcaatttagttacaaactctccctataaaatgagag 489  Q
    ||||||||||||| ||||| ||   ||||||| |||| ||||||||||||| |||||||||||| ||| ||||||||||||||||||||||||| |||||    
T  28603879 gtttgttacttgagctgatttggaggttgcttaatttttaagtttacttaattcttaagtttctccaaattagttacaaactctccctataaaaagagag 28603780  T

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Target: chr2; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 390 - 489
Target Start/End: Original strand, 42925973 - 42926072
Alignment:
Q  390 gtttgttacttgaactgatctgcgagttgcttgatttctaagtttacttaaatcttaagtttcttcaatttagttacaaactctccctataaaatgagag 489  Q
    |||| |||||||| ||||| || ||||||||| |||| ||||||||||||| |||||| |||||  || ||||||||||||||||||||||||| |||||    
T  42925973 gtttcttacttgagctgatatgtgagttgcttaatttttaagtttacttaattcttaaatttctctaaattagttacaaactctccctataaaaggagag 42926072  T

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Target: chr2; HSP #3
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 415 - 489
Target Start/End: Complemental strand, 31327507 - 31327433
Alignment:
Q  415 gttgcttgatttctaagtttacttaaatcttaagtttcttcaatttagttacaaactctccctataaaatgagag 489  Q
    ||||||| |||| ||||||||||||| |||||||||||| ||| ||||||||||||||||||||||||| |||||    
T  31327507 gttgcttaatttttaagtttacttaattcttaagtttctccaaattagttacaaactctccctataaaaggagag 31327433  T

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Target: chr2; HSP #4
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 415 - 489
Target Start/End: Complemental strand, 31334228 - 31334154
Alignment:
Q  415 gttgcttgatttctaagtttacttaaatcttaagtttcttcaatttagttacaaactctccctataaaatgagag 489  Q
    ||||||| |||| ||||||||||||| |||||||||||| ||| ||||||||||||||||||||||||| |||||    
T  31334228 gttgcttaatttttaagtttacttaattcttaagtttctccaaattagttacaaactctccctataaaaggagag 31334154  T

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Target: chr3 (Bit Score: 55; Significance: 2e-22; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 391 - 489
Target Start/End: Complemental strand, 29351019 - 29350921
Alignment:
Q  391 tttgttacttgaactgatctgcgagttgcttgatttctaagtttacttaaatcttaagtttcttcaatttagttacaaactctccctataaaatgagag 489  Q
    |||||||||||| ||||| ||   ||||||| |||| ||||||||||||| |||||||||||| ||| ||||||||||||||||||||||||| |||||    
T  29351019 tttgttacttgacctgatatgtaggttgcttaatttttaagtttacttaattcttaagtttctccaaattagttacaaactctccctataaaaggagag 29350921  T

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Target: chr3; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 390 - 489
Target Start/End: Original strand, 2207115 - 2207214
Alignment:
Q  390 gtttgttacttgaactgatctgcgagttgcttgatttctaagtttacttaaatcttaagtttcttcaatttagttacaaactctccctataaaatgagag 489  Q
    ||||||||||||| |||||||  | ||||||| |||| ||||||||||||| | |||||||||||||| | ||||||||||||||||| ||||| |||||    
T  2207115 gtttgttacttgagctgatctatgggttgcttaatttttaagtttacttaattattaagtttcttcaaatcagttacaaactctccctgtaaaaggagag 2207214  T

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Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 436 - 489
Target Start/End: Original strand, 3656591 - 3656644
Alignment:
Q  436 cttaaatcttaagtttcttcaatttagttacaaactctccctataaaatgagag 489  Q
    ||||| |||||||||||  ||| ||||||||||||||||||||||||| |||||    
T  3656591 cttaattcttaagtttcaccaaattagttacaaactctccctataaaaggagag 3656644  T

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Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 389 - 489
Target Start/End: Original strand, 13155916 - 13156016
Alignment:
Q  389 cgtttgttacttgaactgatctgcgagttgcttgatttctaagtttacttaaatcttaagtttcttcaatttagttacaaactctccctataaaatgaga 488  Q
    |||||| ||||||  |||||||  |||||| || |||| ||||||||||||| |||||||||||| ||  ||| | |  |||||||||||||||| ||||    
T  13155916 cgtttggtacttgcgctgatctctgagttgtttaatttttaagtttacttaactcttaagtttctccagattaatcatgaactctccctataaaaggaga 13156015  T
Q  489 g 489  Q
    |    
T  13156016 g 13156016  T

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Target: chr7 (Bit Score: 51; Significance: 6e-20; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 415 - 489
Target Start/End: Original strand, 13313628 - 13313702
Alignment:
Q  415 gttgcttgatttctaagtttacttaaatcttaagtttcttcaatttagttacaaactctccctataaaatgagag 489  Q
    ||||||| |||| ||||||||||||| |||||||||||| ||| ||||||||||||||| |||||||||||||||    
T  13313628 gttgcttaatttttaagtttacttaattcttaagtttctccaaattagttacaaactcttcctataaaatgagag 13313702  T

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Target: chr7; HSP #2
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 390 - 489
Target Start/End: Original strand, 26286460 - 26286559
Alignment:
Q  390 gtttgttacttgaactgatctgcgagttgcttgatttctaagtttacttaaatcttaagtttcttcaatttagttacaaactctccctataaaatgagag 489  Q
    |||| |||||||| ||||| || | ||||| | |||| ||||||||||||| |||||||||||| ||| ||||||||||||||||| | ||||| |||||    
T  26286460 gtttcttacttgagctgatatgtgggttgcataatttttaagtttacttaattcttaagtttctccaaattagttacaaactctccttgtaaaaggagag 26286559  T

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Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 422 - 489
Target Start/End: Complemental strand, 30258850 - 30258783
Alignment:
Q  422 gatttctaagtttacttaaatcttaagtttcttcaatttagttacaaactctccctataaaatgagag 489  Q
    ||||| ||||||||||||| |||||||||||||| | ||||||||||| |||||||||| || |||||    
T  30258850 gatttttaagtttacttaattcttaagtttcttcgaattagttacaaattctccctatataaggagag 30258783  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 391 - 438
Target Start/End: Complemental strand, 15233269 - 15233222
Alignment:
Q  391 tttgttacttgaactgatctgcgagttgcttgatttctaagtttactt 438  Q
    ||||||||||||||| ||||||| ||||||| |||| |||||||||||    
T  15233269 tttgttacttgaactaatctgcgggttgcttaatttttaagtttactt 15233222  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 390 - 439
Target Start/End: Complemental strand, 4580259 - 4580210
Alignment:
Q  390 gtttgttacttgaactgatctgcgagttgcttgatttctaagtttactta 439  Q
    ||||||||||||| ||||| || ||||||||| |||| ||||||||||||    
T  4580259 gtttgttacttgagctgatatgtgagttgcttaatttttaagtttactta 4580210  T

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Target: scaffold0054 (Bit Score: 48; Significance: 4e-18; HSPs: 1)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 390 - 489
Target Start/End: Complemental strand, 26234 - 26136
Alignment:
Q  390 gtttgttacttgaactgatctgcgagttgcttgatttctaagtttacttaaatcttaagtttcttcaatttagttacaaactctccctataaaatgagag 489  Q
    ||||||||||| | ||||| || | ||||||| |||| |||||| |||||| |||||||||||| ||| ||||||||||||||||||||||||| |||||    
T  26234 gtttgttactt-agctgatttgtgggttgcttaatttttaagttaacttaattcttaagtttctccaaattagttacaaactctccctataaaaggagag 26136  T

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Target: chr6 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 390 - 489
Target Start/End: Complemental strand, 12689765 - 12689666
Alignment:
Q  390 gtttgttacttgaactgatctgcgagttgcttgatttctaagtttacttaaatcttaagtttcttcaatttagttacaaactctccctataaaatgagag 489  Q
    ||||| ||||||| || ||||| | ||||||| |||| ||||||||||||| |||||||||||| ||| | | ||| ||||||||| ||||||| |||||    
T  12689765 gtttgatacttgagcttatctgtgggttgcttaatttttaagtttacttaattcttaagtttctccaaatcaattataaactctccttataaaaggagag 12689666  T

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Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 390 - 489
Target Start/End: Complemental strand, 19674566 - 19674467
Alignment:
Q  390 gtttgttacttgaactgatctgcgagttgcttgatttctaagtttacttaaatcttaagtttcttcaatttagttacaaactctccctataaaatgagag 489  Q
    |||||| ||||||  ||||||  | ||||||| |||| ||||||||||| | |||||||||||| ||| ||||||||||| | ||||||||||| |||||    
T  19674566 gtttgtaacttgagttgatctatgggttgcttaatttttaagtttacttgattcttaagtttctccaaattagttacaaaatatccctataaaaagagag 19674467  T

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Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 429 - 489
Target Start/End: Complemental strand, 22610253 - 22610193
Alignment:
Q  429 aagtttacttaaatcttaagtttcttcaatttagttacaaactctccctataaaatgagag 489  Q
    |||||||||||| | |||||||||| ||  |||||||||||||||| |||||||| |||||    
T  22610253 aagtttacttaattattaagtttctccagattagttacaaactctctctataaaaagagag 22610193  T

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Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 423 - 489
Target Start/End: Original strand, 12799302 - 12799368
Alignment:
Q  423 atttctaagtttacttaaatcttaagtttcttcaatttagttacaaactctccctataaaatgagag 489  Q
    ||||||||| |||||||| || | |||||||  |  ||||||||||||||||||||||||| |||||    
T  12799302 atttctaagcttacttaattcatgagtttctctagattagttacaaactctccctataaaaggagag 12799368  T

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Target: scaffold0002 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 389 - 489
Target Start/End: Complemental strand, 151072 - 150972
Alignment:
Q  389 cgtttgttacttgaactgatctgcgagttgcttgatttctaagtttacttaaatcttaagtttcttcaatttagttacaaactctccctataaaatgaga 488  Q
    |||||| ||||||  |||||||  |||||| || |||| ||||||||||||| |||||||||||| ||  ||| | |  |||||||||||||||| ||||    
T  151072 cgtttggtacttgcgctgatctctgagttgtttaatttttaagtttacttaactcttaagtttctccagattaatcatgaactctccctataaaaggaga 150973  T
Q  489 g 489  Q
    |    
T  150972 g 150972  T

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