View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17886_low_32 (Length: 227)

Name: NF17886_low_32
Description: NF17886
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17886_low_32
NF17886_low_32
[»] chr6 (17 HSPs)
chr6 (4-216)||(26661290-26661502)
chr6 (4-216)||(26767261-26767473)
chr6 (7-85)||(22964131-22964209)
chr6 (7-85)||(23824184-23824262)
chr6 (4-85)||(9183407-9183488)
chr6 (4-85)||(21593138-21593219)
chr6 (18-85)||(603648-603715)
chr6 (18-85)||(17759427-17759494)
chr6 (1-77)||(24435566-24435642)
chr6 (4-85)||(3809324-3809402)
chr6 (4-85)||(5571850-5571931)
chr6 (4-97)||(26954700-26954792)
chr6 (11-85)||(31979954-31980028)
chr6 (4-79)||(10076783-10076858)
chr6 (4-77)||(18234513-18234587)
chr6 (4-63)||(5413845-5413905)
chr6 (122-166)||(21593058-21593102)
[»] chr4 (36 HSPs)
chr4 (4-85)||(34570811-34570892)
chr4 (4-85)||(9927858-9927939)
chr4 (4-85)||(54882512-54882593)
chr4 (4-79)||(50674461-50674536)
chr4 (11-85)||(35661911-35661985)
chr4 (4-85)||(6655428-6655509)
chr4 (71-160)||(8653111-8653200)
chr4 (71-160)||(8664918-8665007)
chr4 (4-85)||(26363737-26363818)
chr4 (4-85)||(36314816-36314897)
chr4 (4-85)||(36329025-36329106)
chr4 (4-81)||(37740320-37740397)
chr4 (58-133)||(10071403-10071477)
chr4 (4-85)||(12745813-12745895)
chr4 (4-85)||(52095757-52095839)
chr4 (4-85)||(41639037-41639118)
chr4 (4-85)||(8689082-8689164)
chr4 (11-85)||(26176028-26176102)
chr4 (4-85)||(5429370-5429451)
chr4 (4-85)||(27417566-27417647)
chr4 (4-85)||(40630456-40630537)
chr4 (4-85)||(46570141-46570222)
chr4 (11-85)||(56179028-56179103)
chr4 (11-85)||(2209192-2209266)
chr4 (4-85)||(25861618-25861700)
chr4 (5-85)||(6743001-6743081)
chr4 (4-63)||(54200303-54200362)
chr4 (6-85)||(54867611-54867690)
chr4 (4-85)||(5268785-5268867)
chr4 (11-85)||(5370479-5370554)
chr4 (4-85)||(5148107-5148189)
chr4 (122-167)||(26363656-26363701)
chr4 (6-75)||(50263314-50263383)
chr4 (11-82)||(12739942-12740014)
chr4 (11-82)||(12748148-12748220)
chr4 (4-84)||(24968801-24968881)
[»] chr3 (40 HSPs)
chr3 (51-160)||(30235616-30235724)
chr3 (4-85)||(4569423-4569504)
chr3 (4-85)||(44331259-44331340)
chr3 (6-85)||(40592357-40592436)
chr3 (4-85)||(29812753-29812834)
chr3 (4-85)||(34490704-34490785)
chr3 (4-85)||(43402405-43402486)
chr3 (4-85)||(49200066-49200147)
chr3 (4-84)||(6096215-6096295)
chr3 (11-85)||(36018334-36018408)
chr3 (4-85)||(5236854-5236935)
chr3 (4-85)||(43404348-43404429)
chr3 (4-85)||(55302580-55302660)
chr3 (73-160)||(47303763-47303850)
chr3 (4-85)||(46173206-46173286)
chr3 (4-85)||(54593176-54593257)
chr3 (7-85)||(5258544-5258623)
chr3 (4-85)||(7761954-7762035)
chr3 (4-85)||(7764141-7764223)
chr3 (1-47)||(24694779-24694825)
chr3 (4-85)||(31340657-31340739)
chr3 (4-85)||(39032130-39032212)
chr3 (4-85)||(8127060-8127141)
chr3 (1-77)||(40845080-40845157)
chr3 (1-80)||(1735884-1735963)
chr3 (4-85)||(16264778-16264860)
chr3 (4-85)||(36029523-36029605)
chr3 (4-85)||(29810558-29810639)
chr3 (122-167)||(31340775-31340820)
chr3 (4-85)||(44331844-44331925)
chr3 (6-85)||(9636527-9636607)
chr3 (33-85)||(16498756-16498808)
chr3 (6-85)||(45094853-45094933)
chr3 (6-85)||(48438647-48438727)
chr3 (6-85)||(40912809-40912888)
chr3 (121-167)||(34490623-34490669)
chr3 (121-167)||(44331177-44331223)
chr3 (40-85)||(3393296-3393341)
chr3 (1-34)||(47923530-47923563)
chr3 (11-84)||(51398517-51398590)
[»] chr7 (29 HSPs)
chr7 (1-85)||(47674337-47674421)
chr7 (4-85)||(47676533-47676614)
chr7 (6-85)||(2389764-2389843)
chr7 (4-85)||(2647283-2647364)
chr7 (4-85)||(27347614-27347694)
chr7 (4-85)||(23554729-23554811)
chr7 (4-85)||(43863951-43864032)
chr7 (4-84)||(6360527-6360607)
chr7 (4-84)||(26417004-26417084)
chr7 (6-85)||(4538950-4539029)
chr7 (6-85)||(32358453-32358532)
chr7 (4-85)||(14070230-14070312)
chr7 (4-85)||(14380258-14380340)
chr7 (4-85)||(4585851-4585932)
chr7 (6-85)||(49092122-49092203)
chr7 (4-80)||(18126339-18126415)
chr7 (4-80)||(33332041-33332117)
chr7 (1-85)||(48489120-48489204)
chr7 (6-85)||(4796255-4796334)
chr7 (7-85)||(30026400-30026477)
chr7 (7-95)||(496394-496481)
chr7 (4-85)||(79819-79902)
chr7 (4-63)||(2761699-2761758)
chr7 (4-85)||(19495659-19495742)
chr7 (11-77)||(31733354-31733420)
chr7 (125-167)||(48491208-48491250)
chr7 (122-167)||(34311334-34311379)
chr7 (4-84)||(6570284-6570364)
chr7 (4-36)||(21983672-21983704)
[»] chr8 (23 HSPs)
chr8 (4-85)||(30143032-30143113)
chr8 (1-85)||(27810988-27811072)
chr8 (4-85)||(15212476-15212557)
chr8 (5-85)||(4731348-4731428)
chr8 (4-85)||(22976006-22976087)
chr8 (4-85)||(40221236-40221317)
chr8 (4-85)||(42435606-42435687)
chr8 (4-85)||(4733515-4733596)
chr8 (6-85)||(1746617-1746697)
chr8 (4-84)||(11383479-11383559)
chr8 (4-63)||(4283040-4283099)
chr8 (6-85)||(43036113-43036192)
chr8 (11-85)||(1345775-1345848)
chr8 (121-167)||(4731267-4731313)
chr8 (4-85)||(19175318-19175400)
chr8 (4-85)||(34256901-34256983)
chr8 (4-85)||(42497904-42497986)
chr8 (4-85)||(12703036-12703117)
chr8 (4-83)||(34254725-34254805)
chr8 (4-85)||(4743590-4743672)
chr8 (4-85)||(10014849-10014930)
chr8 (6-84)||(31217947-31218026)
chr8 (4-36)||(4696263-4696295)
[»] chr1 (24 HSPs)
chr1 (71-171)||(42298542-42298642)
chr1 (4-85)||(44454849-44454930)
chr1 (4-85)||(37879506-37879587)
chr1 (6-90)||(3156552-3156636)
chr1 (4-85)||(31658928-31659009)
chr1 (4-85)||(37033684-37033765)
chr1 (6-85)||(11348191-11348270)
chr1 (4-63)||(29135762-29135821)
chr1 (4-77)||(13598830-13598904)
chr1 (4-85)||(49918039-49918120)
chr1 (19-85)||(4553060-4553126)
chr1 (8-85)||(20762361-20762439)
chr1 (4-85)||(28220623-28220705)
chr1 (4-85)||(28223818-28223900)
chr1 (4-85)||(37070197-37070279)
chr1 (44-85)||(10924913-10924954)
chr1 (33-85)||(13659726-13659778)
chr1 (4-83)||(193086-193165)
chr1 (4-85)||(3189040-3189123)
chr1 (4-85)||(3197857-3197940)
chr1 (4-85)||(3206675-3206758)
chr1 (4-63)||(30476845-30476904)
chr1 (3-36)||(16124295-16124328)
chr1 (4-84)||(22819860-22819940)
[»] chr2 (21 HSPs)
chr2 (51-165)||(1632300-1632413)
chr2 (7-85)||(36318409-36318488)
chr2 (4-85)||(2837241-2837322)
chr2 (4-85)||(20522652-20522733)
chr2 (4-85)||(34389280-34389362)
chr2 (4-85)||(36988472-36988554)
chr2 (11-85)||(39284587-39284661)
chr2 (4-80)||(17865607-17865684)
chr2 (4-80)||(14698600-14698676)
chr2 (11-85)||(29867569-29867644)
chr2 (7-85)||(45099444-45099523)
chr2 (4-80)||(10706843-10706920)
chr2 (4-85)||(21630375-21630456)
chr2 (4-85)||(39483306-39483388)
chr2 (4-81)||(35447498-35447575)
chr2 (4-63)||(5723651-5723711)
chr2 (73-133)||(17629022-17629082)
chr2 (19-85)||(6595406-6595473)
chr2 (4-85)||(33528209-33528291)
chr2 (122-167)||(45726415-45726460)
chr2 (4-63)||(2334814-2334874)
[»] scaffold0014 (1 HSPs)
scaffold0014 (4-85)||(80898-80979)
[»] scaffold0286 (1 HSPs)
scaffold0286 (4-85)||(11030-11111)
[»] chr5 (17 HSPs)
chr5 (4-85)||(42426632-42426713)
chr5 (4-85)||(40146739-40146820)
chr5 (4-63)||(535615-535674)
chr5 (4-63)||(39468929-39468988)
chr5 (4-85)||(32636513-32636595)
chr5 (11-85)||(38746460-38746534)
chr5 (11-85)||(42428822-42428896)
chr5 (4-85)||(13239442-13239523)
chr5 (4-85)||(13487895-13487974)
chr5 (11-85)||(30683312-30683386)
chr5 (4-63)||(19806118-19806177)
chr5 (4-85)||(37438835-37438917)
chr5 (8-85)||(5057521-5057598)
chr5 (4-63)||(27015026-27015085)
chr5 (4-77)||(14520659-14520733)
chr5 (11-63)||(533493-533545)
chr5 (4-36)||(12083813-12083845)
[»] scaffold0176 (1 HSPs)
scaffold0176 (10-85)||(17667-17742)
[»] scaffold0066 (1 HSPs)
scaffold0066 (4-83)||(20812-20891)
[»] scaffold0006 (2 HSPs)
scaffold0006 (4-77)||(6115-6189)
scaffold0006 (33-85)||(149487-149539)
[»] scaffold0002 (1 HSPs)
scaffold0002 (6-85)||(434221-434302)
[»] scaffold0466 (1 HSPs)
scaffold0466 (4-36)||(6848-6880)
[»] scaffold0087 (1 HSPs)
scaffold0087 (4-90)||(36413-36500)


Alignment Details
Target: chr6 (Bit Score: 189; Significance: 1e-102; HSPs: 17)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 4 - 216
Target Start/End: Complemental strand, 26661502 - 26661290
Alignment:
Q  4 acccaaggtacaaccaaccttatcctgaaaacgggtccagcaagccgaaaatcttgtcacattttcccaaaatcgtgtcacgttttgcctccaggaccaa 103  Q
    ||||||||||| ||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26661502 acccaaggtacgaccaaccttatcctgaaaacgagtccagcaagtcgaaaatcttgtcacattttcccaaaatcgtgtcacgttttgcctccaggaccaa 26661403  T
Q  104 ccatgcattcaacatcagaaatcgtgacacggatgtcaaatcgtgtcacgattcttcgctttcttaaatcaccaaattttgagtcatccataacaatgta 203  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26661402 ccatgcattcaacatcagatatcgtgacacggatgtcaaatcgtgtcatgattcttcgctttcttaaatcaccaaattttgagtcatccataacaatgta 26661303  T
Q  204 catccacaggttc 216  Q
    |||||| ||||||    
T  26661302 catccaaaggttc 26661290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 4 - 216
Target Start/End: Complemental strand, 26767473 - 26767261
Alignment:
Q  4 acccaaggtacaaccaaccttatcctgaaaacgggtccagcaagccgaaaatcttgtcacattttcccaaaatcgtgtcacgttttgcctccaggaccaa 103  Q
    ||||||||||| ||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26767473 acccaaggtacgaccaaccttatcctgaaaacgagtccagcaagtcgaaaatcttgtcacattttcccaaaatcgtgtcacgttttgcctccaggaccaa 26767374  T
Q  104 ccatgcattcaacatcagaaatcgtgacacggatgtcaaatcgtgtcacgattcttcgctttcttaaatcaccaaattttgagtcatccataacaatgta 203  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26767373 ccatgcattcaacatcagatatcgtgacacggatgtcaaatcgtgtcatgattcttcgctttcttaaatcaccaaattttgagtcatccataacaatgta 26767274  T
Q  204 catccacaggttc 216  Q
    |||||| ||||||    
T  26767273 catccaaaggttc 26767261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 7 - 85
Target Start/End: Original strand, 22964131 - 22964209
Alignment:
Q  7 caaggtacaaccaaccttatcctgaaaacgggtccagcaagccgaaaatcttgtcacattttcccaaaatcgtgtcacg 85  Q
    |||||||| ||||||||||||||||||||  |||||||||||| |||||| |||||| ||||||||||||||| |||||    
T  22964131 caaggtacgaccaaccttatcctgaaaacttgtccagcaagccaaaaatcgtgtcacgttttcccaaaatcgtatcacg 22964209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 7 - 85
Target Start/End: Complemental strand, 23824262 - 23824184
Alignment:
Q  7 caaggtacaaccaaccttatcctgaaaacgggtccagcaagccgaaaatcttgtcacattttcccaaaatcgtgtcacg 85  Q
    |||||||| ||||||||||||||||||||  |||||||||||| |||||| |||||| ||||||||||||||| |||||    
T  23824262 caaggtacgaccaaccttatcctgaaaacttgtccagcaagccaaaaatcgtgtcacgttttcccaaaatcgtatcacg 23824184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 4 - 85
Target Start/End: Original strand, 9183407 - 9183488
Alignment:
Q  4 acccaaggtacaaccaaccttatcctgaaaacgggtccagcaagccgaaaatcttgtcacattttcccaaaatcgtgtcacg 85  Q
    ||||||||||| ||||||||||||||||||||  | |||||||| | |||||| |||||| |||||||||||||||||||||    
T  9183407 acccaaggtacgaccaaccttatcctgaaaacttgcccagcaagtcaaaaatcgtgtcacgttttcccaaaatcgtgtcacg 9183488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 4 - 85
Target Start/End: Complemental strand, 21593219 - 21593138
Alignment:
Q  4 acccaaggtacaaccaaccttatcctgaaaacgggtccagcaagccgaaaatcttgtcacattttcccaaaatcgtgtcacg 85  Q
    ||||||||||| |||||||||||||| |||||  | ||||||||||||||||| |||||| |||||||||||| ||||||||    
T  21593219 acccaaggtacgaccaaccttatcctaaaaacatgcccagcaagccgaaaatcgtgtcacgttttcccaaaattgtgtcacg 21593138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 18 - 85
Target Start/End: Original strand, 603648 - 603715
Alignment:
Q  18 caaccttatcctgaaaacgggtccagcaagccgaaaatcttgtcacattttcccaaaatcgtgtcacg 85  Q
    ||||||||||||||||||  | ||||||||||||||||| |||||| |||||||||||||||||||||    
T  603648 caaccttatcctgaaaacttgcccagcaagccgaaaatcatgtcacgttttcccaaaatcgtgtcacg 603715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 18 - 85
Target Start/End: Complemental strand, 17759494 - 17759427
Alignment:
Q  18 caaccttatcctgaaaacgggtccagcaagccgaaaatcttgtcacattttcccaaaatcgtgtcacg 85  Q
    ||||||||||||||||||  ||||||||||||||||||  |||||| ||| |||||||||||||||||    
T  17759494 caaccttatcctgaaaacttgtccagcaagccgaaaattgtgtcacgtttccccaaaatcgtgtcacg 17759427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 24435642 - 24435566
Alignment:
Q  1 acaacccaaggtacaaccaaccttatcctgaaaacgggtccagcaagccgaaaatcttgtcacattttcccaaaatc 77  Q
    |||||||||||||| ||||||||||||||||||||| | | | ||||  ||||||| |||||| |||||||||||||    
T  24435642 acaacccaaggtacgaccaaccttatcctgaaaacgtgccaaacaagttgaaaatcgtgtcacgttttcccaaaatc 24435566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 4 - 85
Target Start/End: Original strand, 3809324 - 3809402
Alignment:
Q  4 acccaaggtacaaccaaccttatcctgaaaacgggtccagcaagccgaaaatcttgtcacattttcccaaaatcgtgtcacg 85  Q
    ||||||||||| ||||||||||||||||||||   |||  ||||||||||||| |||||| ||| |||||||||||||||||    
T  3809324 acccaaggtacgaccaaccttatcctgaaaactt-tcc--caagccgaaaatcgtgtcacgtttccccaaaatcgtgtcacg 3809402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 4 - 85
Target Start/End: Complemental strand, 5571931 - 5571850
Alignment:
Q  4 acccaaggtacaaccaaccttatcctgaaaacgggtccagcaagccgaaaatcttgtcacattttcccaaaatcgtgtcacg 85  Q
    ||||||||||| |||||||||| ||| |||||| | ||||||||  ||||||| |||||| ||||| |||||||||| ||||    
T  5571931 acccaaggtacgaccaaccttaacctaaaaacgtgcccagcaagttgaaaatcgtgtcacgttttctcaaaatcgtgacacg 5571850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 4 - 97
Target Start/End: Original strand, 26954700 - 26954792
Alignment:
Q  4 acccaaggtacaaccaaccttatcctgaaaacgggtccagcaagccgaaaatcttgtcacattttcccaaaatcgtgtcacgttttgcctccag 97  Q
    ||||||||||| ||||||||||||||||||| | ||| |||| ||| |||||| || ||| ||||  | ||||||||||| |||||||||||||    
T  26954700 acccaaggtacgaccaaccttatcctgaaaatgtgtcaagcatgccaaaaatcgtgacacgttttatc-aaatcgtgtcatgttttgcctccag 26954792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 11 - 85
Target Start/End: Original strand, 31979954 - 31980028
Alignment:
Q  11 gtacaaccaaccttatcctgaaaacgggtccagcaagccgaaaatcttgtcacattttcccaaaatcgtgtcacg 85  Q
    |||| ||||||||||||||||||||| | ||||||||  ||||||  |||||| |||| ||||||||||| ||||    
T  31979954 gtacgaccaaccttatcctgaaaacgtgcccagcaagttgaaaattgtgtcacgtttttccaaaatcgtgacacg 31980028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 4 - 79
Target Start/End: Complemental strand, 10076858 - 10076783
Alignment:
Q  4 acccaaggtacaaccaaccttatcctgaaaacgggtccagcaagccgaaaatcttgtcacattttcccaaaatcgt 79  Q
    ||||||||||| |||||||||||||||||||||    |||||||   |||||| | |||| |||||||||||||||    
T  10076858 acccaaggtacgaccaaccttatcctgaaaacgtaatcagcaagttaaaaatcgtatcacgttttcccaaaatcgt 10076783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 77
Target Start/End: Original strand, 18234513 - 18234587
Alignment:
Q  4 acccaaggtacaaccaaccttatcctgaaaacgggtccagcaag-ccgaaaatcttgtcacattttcccaaaatc 77  Q
    ||||||||||| |||||||||||||||||||||   ||||||||   ||||||| | |||| |||||||||||||    
T  18234513 acccaaggtacgaccaaccttatcctgaaaacgtacccagcaagtttgaaaatcgtatcacgttttcccaaaatc 18234587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 63
Target Start/End: Original strand, 5413845 - 5413905
Alignment:
Q  4 acccaaggtacaaccaaccttatcctgaaaa-cgggtccagcaagccgaaaatcttgtcac 63  Q
    ||||||||||| ||||||||||||||||||| |  | |||||||||| |||||| ||||||    
T  5413845 acccaaggtacgaccaaccttatcctgaaaatcttgcccagcaagccaaaaatcgtgtcac 5413905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 122 - 166
Target Start/End: Complemental strand, 21593102 - 21593058
Alignment:
Q  122 aaatcgtgacacggatgtcaaatcgtgtcacgattcttcgctttc 166  Q
    |||||||||||||| || |||||| |||||||||||||| |||||    
T  21593102 aaatcgtgacacggttgccaaatcatgtcacgattcttcactttc 21593058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 66; Significance: 3e-29; HSPs: 36)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 4 - 85
Target Start/End: Original strand, 34570811 - 34570892
Alignment:
Q  4 acccaaggtacaaccaaccttatcctgaaaacgggtccagcaagccgaaaatcttgtcacattttcccaaaatcgtgtcacg 85  Q
    ||||||||||||||||||||||||||||||||  ||||||||||||||||||| |||||| |||||||||||||||||||||    
T  34570811 acccaaggtacaaccaaccttatcctgaaaacttgtccagcaagccgaaaatcgtgtcacgttttcccaaaatcgtgtcacg 34570892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 4 - 85
Target Start/End: Original strand, 9927858 - 9927939
Alignment:
Q  4 acccaaggtacaaccaaccttatcctgaaaacgggtccagcaagccgaaaatcttgtcacattttcccaaaatcgtgtcacg 85  Q
    |||||||| || ||||||||||||||||||||  ||||||||||||||||||| ||||||||||||||||||||||||||||    
T  9927858 acccaaggaacgaccaaccttatcctgaaaacttgtccagcaagccgaaaatcgtgtcacattttcccaaaatcgtgtcacg 9927939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 4 - 85
Target Start/End: Complemental strand, 54882593 - 54882512
Alignment:
Q  4 acccaaggtacaaccaaccttatcctgaaaacgggtccagcaagccgaaaatcttgtcacattttcccaaaatcgtgtcacg 85  Q
    ||||||||||| | ||||||||||||||||||| ||||| ||||||||||||| |||||| |||||||||||||||||||||    
T  54882593 acccaaggtacgatcaaccttatcctgaaaacgtgtccaacaagccgaaaatcgtgtcacgttttcccaaaatcgtgtcacg 54882512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 4 - 79
Target Start/End: Original strand, 50674461 - 50674536
Alignment:
Q  4 acccaaggtacaaccaaccttatcctgaaaacgggtccagcaagccgaaaatcttgtcacattttcccaaaatcgt 79  Q
    ||||||||||||||||||||||||||||||||| | ||||||||| ||||||| |||||| |||||||||||||||    
T  50674461 acccaaggtacaaccaaccttatcctgaaaacgtgcccagcaagctgaaaatcatgtcacgttttcccaaaatcgt 50674536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 11 - 85
Target Start/End: Complemental strand, 35661985 - 35661911
Alignment:
Q  11 gtacaaccaaccttatcctgaaaacgggtccagcaagccgaaaatcttgtcacattttcccaaaatcgtgtcacg 85  Q
    |||| ||||||||||||||||||||| | ||| ||||||||||||| || |||||||||||||||||||||||||    
T  35661985 gtacgaccaaccttatcctgaaaacgtgcccaacaagccgaaaatcgtgacacattttcccaaaatcgtgtcacg 35661911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 4 - 85
Target Start/End: Complemental strand, 6655509 - 6655428
Alignment:
Q  4 acccaaggtacaaccaaccttatcctgaaaacgggtccagcaagccgaaaatcttgtcacattttcccaaaatcgtgtcacg 85  Q
    |||||| |||| ||||||||||||||||||||  | ||||||| ||||||||| |||||||||| |||||||||||||||||    
T  6655509 acccaatgtacgaccaaccttatcctgaaaacttgcccagcaaaccgaaaatcgtgtcacatttccccaaaatcgtgtcacg 6655428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 71 - 160
Target Start/End: Complemental strand, 8653200 - 8653111
Alignment:
Q  71 caaaatcgtgtcacgttttgcctccaggaccaaccatgcattcaacatcagaaatcgtgacacggatgtcaaatcgtgtcacgattcttc 160  Q
    ||||||||||||||||||| ||| |||  |||| ||||||||| ||||||||||| ||||||||| || |||||| ||||||||||||||    
T  8653200 caaaatcgtgtcacgttttaccttcagatccaaacatgcattcgacatcagaaattgtgacacggttgccaaatcatgtcacgattcttc 8653111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 71 - 160
Target Start/End: Complemental strand, 8665007 - 8664918
Alignment:
Q  71 caaaatcgtgtcacgttttgcctccaggaccaaccatgcattcaacatcagaaatcgtgacacggatgtcaaatcgtgtcacgattcttc 160  Q
    ||||||||||||||||||| ||| |||  |||| ||||||||| ||||||||||| ||||||||| || |||||| ||||||||||||||    
T  8665007 caaaatcgtgtcacgttttaccttcagatccaaacatgcattcgacatcagaaattgtgacacggttgccaaatcatgtcacgattcttc 8664918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 4 - 85
Target Start/End: Complemental strand, 26363818 - 26363737
Alignment:
Q  4 acccaaggtacaaccaaccttatcctgaaaacgggtccagcaagccgaaaatcttgtcacattttcccaaaatcgtgtcacg 85  Q
    ||||||||||  ||||||||||||||||||||  |  |||||||||||||||| |||||| |||||||||||||||||||||    
T  26363818 acccaaggtatgaccaaccttatcctgaaaacttgctcagcaagccgaaaatcgtgtcacgttttcccaaaatcgtgtcacg 26363737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 4 - 85
Target Start/End: Complemental strand, 36314897 - 36314816
Alignment:
Q  4 acccaaggtacaaccaaccttatcctgaaaacgggtccagcaagccgaaaatcttgtcacattttcccaaaatcgtgtcacg 85  Q
    ||||||||||| ||||||||||||||||||||| | ||||||||  ||||||| |||||| |||||||||||||||| ||||    
T  36314897 acccaaggtacgaccaaccttatcctgaaaacgtgcccagcaagttgaaaatcgtgtcacgttttcccaaaatcgtgacacg 36314816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 4 - 85
Target Start/End: Complemental strand, 36329106 - 36329025
Alignment:
Q  4 acccaaggtacaaccaaccttatcctgaaaacgggtccagcaagccgaaaatcttgtcacattttcccaaaatcgtgtcacg 85  Q
    ||||||||||| ||||||||||||||||||||| | ||||||||  ||||||| |||||| |||||||||||||||| ||||    
T  36329106 acccaaggtacgaccaaccttatcctgaaaacgtgcccagcaagttgaaaatcgtgtcacgttttcccaaaatcgtgacacg 36329025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 4 - 81
Target Start/End: Complemental strand, 37740397 - 37740320
Alignment:
Q  4 acccaaggtacaaccaaccttatcctgaaaacgggtccagcaagccgaaaatcttgtcacattttcccaaaatcgtgt 81  Q
    ||||||||||| ||||||||||||||||||||  | || |||||||||||||| |||||| |||||||||||||||||    
T  37740397 acccaaggtacgaccaaccttatcctgaaaacttgccctgcaagccgaaaatcatgtcacgttttcccaaaatcgtgt 37740320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 58 - 133
Target Start/End: Complemental strand, 10071477 - 10071403
Alignment:
Q  58 tgtcacattttcccaaaatcgtgtcacgttttgcctccaggaccaaccatgcattcaacatcagaaatcgtgacac 133  Q
    ||||||||||||| |||||||||| |||||||| |||||| ||||| |||||||||| ||||||||||||||||||    
T  10071477 tgtcacattttcc-aaaatcgtgttacgttttgtctccagaaccaaacatgcattcagcatcagaaatcgtgacac 10071403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 4 - 85
Target Start/End: Original strand, 12745813 - 12745895
Alignment:
Q  4 acccaaggtacaaccaaccttatcctg-aaaacgggtccagcaagccgaaaatcttgtcacattttcccaaaatcgtgtcacg 85  Q
    ||||||||||| ||||||||||||||| |||||  | ||||||||||||||||| |||||| ||||||||||||| |||||||    
T  12745813 acccaaggtacgaccaaccttatcctggaaaacttgcccagcaagccgaaaatcgtgtcacgttttcccaaaatcatgtcacg 12745895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 4 - 85
Target Start/End: Original strand, 52095757 - 52095839
Alignment:
Q  4 acccaaggtacaaccaaccttatcctgaaaa-cgggtccagcaagccgaaaatcttgtcacattttcccaaaatcgtgtcacg 85  Q
    ||||||||||| ||||||||||||||||||| |  | |||||||||| |||||| |||||| |||||||||||||||||||||    
T  52095757 acccaaggtacgaccaaccttatcctgaaaatcttgcccagcaagccaaaaatcgtgtcacgttttcccaaaatcgtgtcacg 52095839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 4 - 85
Target Start/End: Complemental strand, 41639118 - 41639037
Alignment:
Q  4 acccaaggtacaaccaaccttatcctgaaaacgggtccagcaagccgaaaatcttgtcacattttcccaaaatcgtgtcacg 85  Q
    ||||||||||| ||||||||||||||||||||| | ||| ||||  ||||||| |||||| |||| ||||||||||||||||    
T  41639118 acccaaggtacgaccaaccttatcctgaaaacgtgcccaacaagttgaaaatcgtgtcacgtttttccaaaatcgtgtcacg 41639037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 4 - 85
Target Start/End: Complemental strand, 8689164 - 8689082
Alignment:
Q  4 acccaaggtacaaccaaccttatcctgaaaacgggtccagcaag-ccgaaaatcttgtcacattttcccaaaatcgtgtcacg 85  Q
    ||||||||||| |||||||||||||||||||||   ||||||||   ||||||| |||||| |||||||||||||||||||||    
T  8689164 acccaaggtacgaccaaccttatcctgaaaacgtacccagcaagtttgaaaatcgtgtcacgttttcccaaaatcgtgtcacg 8689082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 11 - 85
Target Start/End: Original strand, 26176028 - 26176102
Alignment:
Q  11 gtacaaccaaccttatcctgaaaacgggtccagcaagccgaaaatcttgtcacattttcccaaaatcgtgtcacg 85  Q
    |||| ||||||||||||||||||||  | ||| ||||||||||||| |||||| |||||||||||| ||||||||    
T  26176028 gtacgaccaaccttatcctgaaaacttgcccatcaagccgaaaatcgtgtcacgttttcccaaaattgtgtcacg 26176102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 4 - 85
Target Start/End: Complemental strand, 5429451 - 5429370
Alignment:
Q  4 acccaaggtacaaccaaccttatcctgaaaacgggtccagcaagccgaaaatcttgtcacattttcccaaaatcgtgtcacg 85  Q
    ||||||||||| ||||| |||| |||||||||  ||||| ||||| ||||||| | |||| |||||||||||||||||||||    
T  5429451 acccaaggtacgaccaatcttaacctgaaaacttgtccaacaagctgaaaatcgtatcacgttttcccaaaatcgtgtcacg 5429370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 4 - 85
Target Start/End: Original strand, 27417566 - 27417647
Alignment:
Q  4 acccaaggtacaaccaaccttatcctgaaaacgggtccagcaagccgaaaatcttgtcacattttcccaaaatcgtgtcacg 85  Q
    ||||||||||| |||||||||||||||||| || | | | ||||  ||||||| |||||| |||||||||||||||||||||    
T  27417566 acccaaggtacgaccaaccttatcctgaaaccgtgccgaacaagttgaaaatcgtgtcacgttttcccaaaatcgtgtcacg 27417647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 4 - 85
Target Start/End: Complemental strand, 40630537 - 40630456
Alignment:
Q  4 acccaaggtacaaccaaccttatcctgaaaacgggtccagcaagccgaaaatcttgtcacattttcccaaaatcgtgtcacg 85  Q
    ||||||||||| ||||||||||| ||||||| | | | ||||||| ||||||| |||||| |||||||||||||||| ||||    
T  40630537 acccaaggtacgaccaaccttattctgaaaatgtgcctagcaagctgaaaatcgtgtcacgttttcccaaaatcgtgacacg 40630456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 4 - 85
Target Start/End: Original strand, 46570141 - 46570222
Alignment:
Q  4 acccaaggtacaaccaaccttatcctgaaaacgggtccagcaagccgaaaatcttgtcacattttcccaaaatcgtgtcacg 85  Q
    |||||| |||| |||||||||||||||||||   | ||||||||||||||||  |||||| ||||||||||||| |||||||    
T  46570141 acccaaagtacgaccaaccttatcctgaaaatttgcccagcaagccgaaaattgtgtcacgttttcccaaaatcttgtcacg 46570222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 11 - 85
Target Start/End: Original strand, 56179028 - 56179103
Alignment:
Q  11 gtacaaccaaccttatcctgaaaa-cgggtccagcaagccgaaaatcttgtcacattttcccaaaatcgtgtcacg 85  Q
    |||| ||||||||||||||||||| |  | |||||||||| |||||| |||||| |||||||||||||||||||||    
T  56179028 gtacgaccaaccttatcctgaaaatcttgcccagcaagccaaaaatcatgtcacgttttcccaaaatcgtgtcacg 56179103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 11 - 85
Target Start/End: Complemental strand, 2209266 - 2209192
Alignment:
Q  11 gtacaaccaaccttatcctgaaaacgggtccagcaagccgaaaatcttgtcacattttcccaaaatcgtgtcacg 85  Q
    |||| ||||||||||||||||||||  | | ||||| ||||||||| |||||| ||| |||||||||||||||||    
T  2209266 gtacgaccaaccttatcctgaaaacttgcctagcaaaccgaaaatcgtgtcacgtttccccaaaatcgtgtcacg 2209192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 4 - 85
Target Start/End: Complemental strand, 25861700 - 25861618
Alignment:
Q  4 acccaaggtacaaccaaccttatcctgaaaacgggtccagcaagccgaaaatcttgtcac-attttcccaaaatcgtgtcacg 85  Q
    ||||||||||| ||||||||||||||||||||  | ||||||||  ||||||| ||||||  |||||||||||||||| ||||    
T  25861700 acccaaggtacgaccaaccttatcctgaaaacatgcccagcaagttgaaaatcgtgtcacgtttttcccaaaatcgtgacacg 25861618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 5 - 85
Target Start/End: Complemental strand, 6743081 - 6743001
Alignment:
Q  5 cccaaggtacaaccaaccttatcctgaaaacgggtccagcaagccgaaaatcttgtcacattttcccaaaatcgtgtcacg 85  Q
    |||||||||| ||||||||||||||||||||| | ||| ||||   |||||| |||||| ||||||||||| |||| ||||    
T  6743081 cccaaggtacgaccaaccttatcctgaaaacgtgcccaacaagtttaaaatcgtgtcacgttttcccaaaaacgtgccacg 6743001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 4 - 63
Target Start/End: Original strand, 54200303 - 54200362
Alignment:
Q  4 acccaaggtacaaccaaccttatcctgaaaacgggtccagcaagccgaaaatcttgtcac 63  Q
    ||||||||||| |||||||||||| |||||||  | ||||||||||||||||| ||||||    
T  54200303 acccaaggtacgaccaaccttatcttgaaaacttgcccagcaagccgaaaatcgtgtcac 54200362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 6 - 85
Target Start/End: Original strand, 54867611 - 54867690
Alignment:
Q  6 ccaaggtacaaccaaccttatcctgaaaacgggtccagcaagccgaaaatcttgtcacattttcccaaaatcgtgtcacg 85  Q
    ||||||||| |||||||||||||  |||||| | ||||||||  ||||||| |||||| |||||||||||| ||| ||||    
T  54867611 ccaaggtacgaccaaccttatccgaaaaacgtgcccagcaagttgaaaatcgtgtcacgttttcccaaaattgtgacacg 54867690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 4 - 85
Target Start/End: Complemental strand, 5268867 - 5268785
Alignment:
Q  4 acccaaggtacaaccaaccttatcctgaaaacgggtccagcaag-ccgaaaatcttgtcacattttcccaaaatcgtgtcacg 85  Q
    ||||||||||| |||||||||||||||||||||   ||| ||||   ||||||| |||||| |||||||||||||||| ||||    
T  5268867 acccaaggtacgaccaaccttatcctgaaaacgtacccaacaagtttgaaaatcgtgtcacgttttcccaaaatcgtgacacg 5268785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 11 - 85
Target Start/End: Original strand, 5370479 - 5370554
Alignment:
Q  11 gtacaaccaaccttatcctgaaaa-cgggtccagcaagccgaaaatcttgtcacattttcccaaaatcgtgtcacg 85  Q
    |||| ||||||||||||||||||  |  | |||||||||| |||||| ||||||  ||||||||||||||||||||    
T  5370479 gtacgaccaaccttatcctgaaagtcttgcccagcaagccaaaaatcgtgtcacgatttcccaaaatcgtgtcacg 5370554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 85
Target Start/End: Original strand, 5148107 - 5148189
Alignment:
Q  4 acccaaggtacaaccaaccttatcctgaaaacgggtccagcaag-ccgaaaatcttgtcacattttcccaaaatcgtgtcacg 85  Q
    ||||||||||| |||||||||||||||||||||  ||||| |||   ||||||| |||||  ||||| |||||||||| ||||    
T  5148107 acccaaggtacgaccaaccttatcctgaaaacgtatccagtaagtttgaaaatcgtgtcaagttttcacaaaatcgtgccacg 5148189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 122 - 167
Target Start/End: Complemental strand, 26363701 - 26363656
Alignment:
Q  122 aaatcgtgacacggatgtcaaatcgtgtcacgattcttcgctttct 167  Q
    ||||||||||| || || ||||||||||||||||||||| ||||||    
T  26363701 aaatcgtgacatggttgccaaatcgtgtcacgattcttcactttct 26363656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 6 - 75
Target Start/End: Original strand, 50263314 - 50263383
Alignment:
Q  6 ccaaggtacaaccaaccttatcctgaaaacgggtccagcaagccgaaaatcttgtcacattttcccaaaa 75  Q
    ||||||||| ||||||||||| ||||||||    ||| ||||||||||||| ||| || |||||||||||    
T  50263314 ccaaggtacgaccaaccttattctgaaaacttacccaccaagccgaaaatcgtgttacgttttcccaaaa 50263383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 11 - 82
Target Start/End: Original strand, 12739942 - 12740014
Alignment:
Q  11 gtacaaccaaccttatcctgaaaa-cgggtccagcaagccgaaaatcttgtcacattttcccaaaatcgtgtc 82  Q
    |||| ||||||||||||||||||| |  | |||||||||| |||||  ||| || ||||||||||||||||||    
T  12739942 gtacgaccaaccttatcctgaaaaacttgcccagcaagccaaaaattgtgttacgttttcccaaaatcgtgtc 12740014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 11 - 82
Target Start/End: Original strand, 12748148 - 12748220
Alignment:
Q  11 gtacaaccaaccttatcctgaaaa-cgggtccagcaagccgaaaatcttgtcacattttcccaaaatcgtgtc 82  Q
    |||| ||||||||||||||||||| |  | |||||||||| |||||  ||| || ||||||||||||||||||    
T  12748148 gtacgaccaaccttatcctgaaaaacttgcccagcaagccaaaaattgtgttacgttttcccaaaatcgtgtc 12748220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 84
Target Start/End: Complemental strand, 24968881 - 24968801
Alignment:
Q  4 acccaaggtacaaccaaccttatcctgaaaacgggtccagcaagccgaaaatcttgtcacattttcccaaaatcgtgtcac 84  Q
    |||||| |||| ||||||||||||||||||||| ||| |||| ||  || ||| ||||||  || | ||||||||||||||    
T  24968881 acccaatgtacgaccaaccttatcctgaaaacgtgtcaagcatgctaaatatcgtgtcacgattgcacaaaatcgtgtcac 24968801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 66; Significance: 3e-29; HSPs: 40)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 51 - 160
Target Start/End: Complemental strand, 30235724 - 30235616
Alignment:
Q  51 aaaatcttgtcacattttcccaaaatcgtgtcacgttttgcctccaggaccaaccatgcattcaacatcagaaatcgtgacacggatgtcaaatcgtgtc 150  Q
    |||||| |||||| |||||| |||||||||||||||||||||| ||| ||||| |||||||||  |||||||||||||||||||| || |||||||||||    
T  30235724 aaaatcgtgtcacgttttcc-aaaatcgtgtcacgttttgccttcagaaccaaacatgcattcggcatcagaaatcgtgacacggttgccaaatcgtgtc 30235626  T
Q  151 acgattcttc 160  Q
    ||||||||||    
T  30235625 acgattcttc 30235616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 4 - 85
Target Start/End: Complemental strand, 4569504 - 4569423
Alignment:
Q  4 acccaaggtacaaccaaccttatcctgaaaacgggtccagcaagccgaaaatcttgtcacattttcccaaaatcgtgtcacg 85  Q
    ||||||||||| ||||||||||||||||||||  | ||||||||||||||||| |||||| ||||||||||||| |||||||    
T  4569504 acccaaggtacgaccaaccttatcctgaaaacttgcccagcaagccgaaaatcgtgtcacgttttcccaaaatcatgtcacg 4569423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 4 - 85
Target Start/End: Complemental strand, 44331340 - 44331259
Alignment:
Q  4 acccaaggtacaaccaaccttatcctgaaaacgggtccagcaagccgaaaatcttgtcacattttcccaaaatcgtgtcacg 85  Q
    ||||||||||| |||||||||||||||||||||   |||||||||| |||||| |||||| |||||||||||||||||||||    
T  44331340 acccaaggtacgaccaaccttatcctgaaaacgtacccagcaagccaaaaatcgtgtcactttttcccaaaatcgtgtcacg 44331259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 6 - 85
Target Start/End: Complemental strand, 40592436 - 40592357
Alignment:
Q  6 ccaaggtacaaccaaccttatcctgaaaacgggtccagcaagccgaaaatcttgtcacattttcccaaaatcgtgtcacg 85  Q
    ||||||||| ||||||||||||||||||||| ||||||||||  ||||||| |||||| |||||||||||||||| ||||    
T  40592436 ccaaggtacgaccaaccttatcctgaaaacgtgtccagcaagttgaaaatcgtgtcacgttttcccaaaatcgtgacacg 40592357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 4 - 85
Target Start/End: Complemental strand, 29812834 - 29812753
Alignment:
Q  4 acccaaggtacaaccaaccttatcctgaaaacgggtccagcaagccgaaaatcttgtcacattttcccaaaatcgtgtcacg 85  Q
    ||||||||||| ||||||||||||||||||||  | |||||||| | |||||| |||||| |||||||||||||||||||||    
T  29812834 acccaaggtacgaccaaccttatcctgaaaacttgcccagcaagacaaaaatcgtgtcacgttttcccaaaatcgtgtcacg 29812753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 4 - 85
Target Start/End: Complemental strand, 34490785 - 34490704
Alignment:
Q  4 acccaaggtacaaccaaccttatcctgaaaacgggtccagcaagccgaaaatcttgtcacattttcccaaaatcgtgtcacg 85  Q
    ||||||||||||||||||||||||||||||||  | |||  |||||||||||| |||||| |||| ||||||||||||||||    
T  34490785 acccaaggtacaaccaaccttatcctgaaaacttgcccaataagccgaaaatcgtgtcacgtttttccaaaatcgtgtcacg 34490704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 4 - 85
Target Start/End: Original strand, 43402405 - 43402486
Alignment:
Q  4 acccaaggtacaaccaaccttatcctgaaaacgggtccagcaagccgaaaatcttgtcacattttcccaaaatcgtgtcacg 85  Q
    ||||||| ||||||||||||||||||||||||  | ||||||||||||||||| |||||| |||  ||||||||||||||||    
T  43402405 acccaagatacaaccaaccttatcctgaaaacttgcccagcaagccgaaaatcgtgtcacgtttctccaaaatcgtgtcacg 43402486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 4 - 85
Target Start/End: Original strand, 49200066 - 49200147
Alignment:
Q  4 acccaaggtacaaccaaccttatcctgaaaacgggtccagcaagccgaaaatcttgtcacattttcccaaaatcgtgtcacg 85  Q
    ||||||||||| ||||||||||||||||||||  | ||||||||||||||||| |||||| ||| ||||| |||||||||||    
T  49200066 acccaaggtacgaccaaccttatcctgaaaacatgcccagcaagccgaaaatcgtgtcacgtttccccaacatcgtgtcacg 49200147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 4 - 84
Target Start/End: Original strand, 6096215 - 6096295
Alignment:
Q  4 acccaaggtacaaccaaccttatcctgaaaacgggtccagcaagccgaaaatcttgtcacattttcccaaaatcgtgtcac 84  Q
    ||||||||||| |||||||||||||||||||   |||||  |||||||||||| |||||| ||||||||||||||||||||    
T  6096215 acccaaggtacgaccaaccttatcctgaaaatttgtccaataagccgaaaatcgtgtcacgttttcccaaaatcgtgtcac 6096295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 11 - 85
Target Start/End: Complemental strand, 36018408 - 36018334
Alignment:
Q  11 gtacaaccaaccttatcctgaaaacgggtccagcaagccgaaaatcttgtcacattttcccaaaatcgtgtcacg 85  Q
    |||| |||||||||||||| |||||| | ||||||||||||||||  |||||| |||||||||||||||||||||    
T  36018408 gtacgaccaaccttatcctaaaaacgtgcccagcaagccgaaaattgtgtcacgttttcccaaaatcgtgtcacg 36018334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 4 - 85
Target Start/End: Original strand, 5236854 - 5236935
Alignment:
Q  4 acccaaggtacaaccaaccttatcctgaaaacgggtccagcaagccgaaaatcttgtcacattttcccaaaatcgtgtcacg 85  Q
    ||||||||||| ||||| ||||||||||||||    ||||||||||||||||| |||||| |||||||||||| ||||||||    
T  5236854 acccaaggtacgaccaaacttatcctgaaaactttcccagcaagccgaaaatcgtgtcacgttttcccaaaattgtgtcacg 5236935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 4 - 85
Target Start/End: Original strand, 43404348 - 43404429
Alignment:
Q  4 acccaaggtacaaccaaccttatcctgaaaacgggtccagcaagccgaaaatcttgtcacattttcccaaaatcgtgtcacg 85  Q
    ||||||||||| ||| ||||||||||||||||  |  |||||||||||||||| |||||| ||| |||||||||||||||||    
T  43404348 acccaaggtacgaccgaccttatcctgaaaacttgctcagcaagccgaaaatcgtgtcacgtttccccaaaatcgtgtcacg 43404429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 4 - 85
Target Start/End: Original strand, 55302580 - 55302660
Alignment:
Q  4 acccaaggtacaaccaaccttatcctgaaaacgggtccagcaagccgaaaatcttgtcacattttcccaaaatcgtgtcacg 85  Q
    ||||||||||| ||||||||||||||||||||  | ||||||||||||||||| | |||| ||||||| |||||||||||||    
T  55302580 acccaaggtacgaccaaccttatcctgaaaacttgcccagcaagccgaaaatcgtatcacgttttccc-aaatcgtgtcacg 55302660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 73 - 160
Target Start/End: Complemental strand, 47303850 - 47303763
Alignment:
Q  73 aaatcgtgtcacgttttgcctccaggaccaaccatgcattcaacatcagaaatcgtgacacggatgtcaaatcgtgtcacgattcttc 160  Q
    ||||| ||||||||||||||| ||| ||| | |||||||||  ||||| |||||||| ||||| || |||||||||||||||||||||    
T  47303850 aaatcatgtcacgttttgccttcagaaccgaacatgcattcggcatcaaaaatcgtgtcacggttgccaaatcgtgtcacgattcttc 47303763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 4 - 85
Target Start/End: Complemental strand, 46173286 - 46173206
Alignment:
Q  4 acccaaggtacaaccaaccttatcctgaaaacgggtccagcaagccgaaaatcttgtcacattttcccaaaatcgtgtcacg 85  Q
    ||||||||||| ||||||||||||||||||||| | ||| |||||||  |||| |||||  |||||||||||||||||||||    
T  46173286 acccaaggtacgaccaaccttatcctgaaaacgtgcccaacaagccg-gaatcgtgtcatgttttcccaaaatcgtgtcacg 46173206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 4 - 85
Target Start/End: Complemental strand, 54593257 - 54593176
Alignment:
Q  4 acccaaggtacaaccaaccttatcctgaaaacgggtccagcaagccgaaaatcttgtcacattttcccaaaatcgtgtcacg 85  Q
    |||||| |||| ||||||||||||||||||||| | ||||||||  ||||||| |||||| |||||||||||| | ||||||    
T  54593257 acccaatgtacgaccaaccttatcctgaaaacgtgcccagcaagttgaaaatcgtgtcacgttttcccaaaattgagtcacg 54593176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 7 - 85
Target Start/End: Original strand, 5258544 - 5258623
Alignment:
Q  7 caaggtacaaccaaccttatcctgaaaa-cgggtccagcaagccgaaaatcttgtcacattttcccaaaatcgtgtcacg 85  Q
    |||||||| ||||||||||||||||||| |  | |||||||||| |||||| ||||||  ||||||||||||||||||||    
T  5258544 caaggtacgaccaaccttatcctgaaaatcttgcccagcaagccaaaaatcgtgtcacgatttcccaaaatcgtgtcacg 5258623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 4 - 85
Target Start/End: Complemental strand, 7762035 - 7761954
Alignment:
Q  4 acccaaggtacaaccaaccttatcctgaaaa-cgggtccagcaagccgaaaatcttgtcacattttcccaaaatcgtgtcacg 85  Q
    ||||||||||| ||||||||||||||||||| |  | |||||||||| |||||| ||||||  ||||||||||||||||||||    
T  7762035 acccaaggtacgaccaaccttatcctgaaaatcttgcccagcaagccaaaaatcgtgtcac-gtttcccaaaatcgtgtcacg 7761954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 4 - 85
Target Start/End: Complemental strand, 7764223 - 7764141
Alignment:
Q  4 acccaaggtacaaccaaccttatcctgaaaa-cgggtccagcaagccgaaaatcttgtcacattttcccaaaatcgtgtcacg 85  Q
    ||||||||||| |||||||||||||| |||| |  | ||| |||||| |||||| |||||| |||||||||||||||||||||    
T  7764223 acccaaggtacgaccaaccttatcctaaaaatcttgcccaacaagccaaaaatcgtgtcacgttttcccaaaatcgtgtcacg 7764141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 24694825 - 24694779
Alignment:
Q  1 acaacccaaggtacaaccaaccttatcctgaaaacgggtccagcaag 47  Q
    |||||||||||||| ||||||||||||||||||||| ||||||||||    
T  24694825 acaacccaaggtacgaccaaccttatcctgaaaacgtgtccagcaag 24694779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 4 - 85
Target Start/End: Original strand, 31340657 - 31340739
Alignment:
Q  4 acccaaggtacaaccaaccttatcctgaaaacgggtccagcaagccgaaaatcttgtca-cattttcccaaaatcgtgtcacg 85  Q
    ||||||||||| ||||||||||||||||||||  | ||| ||||||||||||| |||||   ||||||||||||| |||||||    
T  31340657 acccaaggtacgaccaaccttatcctgaaaacttgcccaacaagccgaaaatcgtgtcatgtttttcccaaaatcatgtcacg 31340739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 4 - 85
Target Start/End: Complemental strand, 39032212 - 39032130
Alignment:
Q  4 acccaaggtacaaccaaccttatcctgaaaacgggtccagcaagcc-gaaaatcttgtcacattttcccaaaatcgtgtcacg 85  Q
    ||||||||||| |||||| ||||||||||||||   ||||||||   ||||||| ||||||||||||||||||||||| ||||    
T  39032212 acccaaggtacgaccaactttatcctgaaaacgtacccagcaagtttgaaaatcgtgtcacattttcccaaaatcgtgacacg 39032130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 4 - 85
Target Start/End: Original strand, 8127060 - 8127141
Alignment:
Q  4 acccaaggtacaaccaaccttatcctgaaaacgggtccagcaagccgaaaatcttgtcacattttcccaaaatcgtgtcacg 85  Q
    ||||||| ||| |||||||||||||||||||||   | ||||||  ||||||| ||||||| ||||||||||||||| ||||    
T  8127060 acccaagatacgaccaaccttatcctgaaaacgtacctagcaagttgaaaatcgtgtcacactttcccaaaatcgtgacacg 8127141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 40845080 - 40845157
Alignment:
Q  1 acaacccaaggtacaaccaaccttatcct-gaaaacgggtccagcaagccgaaaatcttgtcacattttcccaaaatc 77  Q
    |||||||||||||| ||||||||||||||  |||||| |||||||| |  ||||||| |||||| |||||||||||||    
T  40845080 acaacccaaggtacgaccaaccttatcctaaaaaacgtgtccagcacgttgaaaatcgtgtcacgttttcccaaaatc 40845157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 80
Target Start/End: Complemental strand, 1735963 - 1735884
Alignment:
Q  1 acaacccaaggtacaaccaaccttatcctgaaaacgggtccagcaagccgaaaatcttgtcacattttcccaaaatcgtg 80  Q
    |||||||||||||| |||||||||||||| |||| | |||   ||||  ||||||| |||||| ||||||||||||||||    
T  1735963 acaacccaaggtacgaccaaccttatcctaaaaatgtgtcattcaagttgaaaatcgtgtcacgttttcccaaaatcgtg 1735884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 4 - 85
Target Start/End: Original strand, 16264778 - 16264860
Alignment:
Q  4 acccaaggtacaaccaaccttatcctgaaaacgggtccagcaag-ccgaaaatcttgtcacattttcccaaaatcgtgtcacg 85  Q
    ||||||||||| |||||||||||||||||||||   ||||| ||   ||||||| |||||| |||||||||||||||| ||||    
T  16264778 acccaaggtacgaccaaccttatcctgaaaacgtacccagctagtttgaaaatcgtgtcacgttttcccaaaatcgtgacacg 16264860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 4 - 85
Target Start/End: Original strand, 36029523 - 36029605
Alignment:
Q  4 acccaaggtacaaccaaccttatcctgaaaacgggtccagcaag-ccgaaaatcttgtcacattttcccaaaatcgtgtcacg 85  Q
    ||||||||||| |||||||||||||||||||||   ||||||||   ||||||| |||||| |||| ||||||||||| ||||    
T  36029523 acccaaggtacgaccaaccttatcctgaaaacgtacccagcaagtttgaaaatcgtgtcacgtttttccaaaatcgtgacacg 36029605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 4 - 85
Target Start/End: Complemental strand, 29810639 - 29810558
Alignment:
Q  4 acccaaggtacaaccaaccttatcctgaaaacgggtccagcaagccgaaaatcttgtcacattttcccaaaatcgtgtcacg 85  Q
    ||||||||||| |||||||||||||||||||   |||||||||||| |||||  ||  || |||| | ||||||||||||||    
T  29810639 acccaaggtacgaccaaccttatcctgaaaatttgtccagcaagccaaaaattgtgctacgtttttctaaaatcgtgtcacg 29810558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 122 - 167
Target Start/End: Original strand, 31340775 - 31340820
Alignment:
Q  122 aaatcgtgacacggatgtcaaatcgtgtcacgattcttcgctttct 167  Q
    |||||||||||||| || ||||||||||||||||||||| ||||||    
T  31340775 aaatcgtgacacggttgccaaatcgtgtcacgattcttcactttct 31340820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 4 - 85
Target Start/End: Original strand, 44331844 - 44331925
Alignment:
Q  4 acccaaggtacaaccaaccttatcctgaaaacgggtccagcaagccgaaaatcttgtcacattttcccaaaatcgtgtcacg 85  Q
    ||||||||||| || ||| ||||| ||||||||   |||| ||||| |||||| |||||| |||| ||||||||||||||||    
T  44331844 acccaaggtacgactaactttatcttgaaaacgtacccaggaagccaaaaatcgtgtcacgtttttccaaaatcgtgtcacg 44331925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 6 - 85
Target Start/End: Original strand, 9636527 - 9636607
Alignment:
Q  6 ccaaggtacaaccaaccttatcctgaaaa-cgggtccagcaagccgaaaatcttgtcacattttcccaaaatcgtgtcacg 85  Q
    ||||||||| ||||||||||||||||||| |  ||||| |||||| |||||| |||||   |||||||||||| |||||||    
T  9636527 ccaaggtacgaccaaccttatcctgaaaatcttgtccatcaagccaaaaatcgtgtcatgatttcccaaaatcatgtcacg 9636607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 33 - 85
Target Start/End: Complemental strand, 16498808 - 16498756
Alignment:
Q  33 aacgggtccagcaagccgaaaatcttgtcacattttcccaaaatcgtgtcacg 85  Q
    |||| ||| ||||||||||||||| || ||||||||||||||||||| |||||    
T  16498808 aacgtgtcaagcaagccgaaaatcgtgacacattttcccaaaatcgtatcacg 16498756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 6 - 85
Target Start/End: Complemental strand, 45094933 - 45094853
Alignment:
Q  6 ccaaggtacaaccaaccttatcctgaaaa-cgggtccagcaagccgaaaatcttgtcacattttcccaaaatcgtgtcacg 85  Q
    ||||||||| ||||||||||||||||||| |  | ||| |||||| |||||| ||||||  ||||||||||| ||||||||    
T  45094933 ccaaggtacgaccaaccttatcctgaaaatcttgcccaacaagccaaaaatcgtgtcacgatttcccaaaattgtgtcacg 45094853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 6 - 85
Target Start/End: Original strand, 48438647 - 48438727
Alignment:
Q  6 ccaaggtacaaccaaccttatcctgaaaacgggtccagcaag-ccgaaaatcttgtcacattttcccaaaatcgtgtcacg 85  Q
    |||||||||||||||||||||||||||||||   ||| ||||   ||||||| |||||| ||| |||||||||||| ||||    
T  48438647 ccaaggtacaaccaaccttatcctgaaaacgtacccatcaagtttgaaaatcgtgtcacgtttccccaaaatcgtgacacg 48438727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 6 - 85
Target Start/End: Complemental strand, 40912888 - 40912809
Alignment:
Q  6 ccaaggtacaaccaaccttatcctgaaaacgggtccagcaagccgaaaatcttgtcacattttcccaaaatcgtgtcacg 85  Q
    ||||| ||| |||| |||||||| ||||||  | ||| ||||||||||||| |||||| |||||||||||| || |||||    
T  40912888 ccaagatacgaccagccttatccagaaaacttgcccaacaagccgaaaatcgtgtcacgttttcccaaaattgtatcacg 40912809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 121 - 167
Target Start/End: Complemental strand, 34490669 - 34490623
Alignment:
Q  121 gaaatcgtgacacggatgtcaaatcgtgtcacgattcttcgctttct 167  Q
    ||||||||||||||| || |||||||||||| |||||||| ||||||    
T  34490669 gaaatcgtgacacggttgccaaatcgtgtcatgattcttcactttct 34490623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 121 - 167
Target Start/End: Complemental strand, 44331223 - 44331177
Alignment:
Q  121 gaaatcgtgacacggatgtcaaatcgtgtcacgattcttcgctttct 167  Q
    ||||||||||||||| || |||| |||||||||||||||| ||||||    
T  44331223 gaaatcgtgacacggttgccaaagcgtgtcacgattcttcactttct 44331177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 40 - 85
Target Start/End: Complemental strand, 3393341 - 3393296
Alignment:
Q  40 ccagcaagccgaaaatcttgtcacattttcccaaaatcgtgtcacg 85  Q
    |||||||||| |||||| ||||||  ||||||||||||||||||||    
T  3393341 ccagcaagccaaaaatcgtgtcacgatttcccaaaatcgtgtcacg 3393296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 47923563 - 47923530
Alignment:
Q  1 acaacccaaggtacaaccaaccttatcctgaaaa 34  Q
    |||||||||||||| |||||||||||||||||||    
T  47923563 acaacccaaggtacgaccaaccttatcctgaaaa 47923530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 11 - 84
Target Start/End: Complemental strand, 51398590 - 51398517
Alignment:
Q  11 gtacaaccaaccttatcctgaaaacgggtccagcaagccgaaaatcttgtcacattttcccaaaatcgtgtcac 84  Q
    |||| ||||||| |||||| |||||  | ||| ||| ||||||||  |||||| ||||||||||||||||||||    
T  51398590 gtacgaccaaccatatcctaaaaacttgcccaacaaaccgaaaattgtgtcacgttttcccaaaatcgtgtcac 51398517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 61; Significance: 2e-26; HSPs: 29)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 1 - 85
Target Start/End: Original strand, 47674337 - 47674421
Alignment:
Q  1 acaacccaaggtacaaccaaccttatcctgaaaacgggtccagcaagccgaaaatcttgtcacattttcccaaaatcgtgtcacg 85  Q
    |||||||||||||| ||||||||||||||||||||  | ||||||||||||||||| |||||| |||||||||||||||||||||    
T  47674337 acaacccaaggtacgaccaaccttatcctgaaaacttgcccagcaagccgaaaatcgtgtcacgttttcccaaaatcgtgtcacg 47674421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 4 - 85
Target Start/End: Original strand, 47676533 - 47676614
Alignment:
Q  4 acccaaggtacaaccaaccttatcctgaaaacgggtccagcaagccgaaaatcttgtcacattttcccaaaatcgtgtcacg 85  Q
    ||||||||||| ||||||||||||||||||||  | ||||||||||||||||| |||||| |||||||||||||||||||||    
T  47676533 acccaaggtacgaccaaccttatcctgaaaacttgcccagcaagccgaaaatcgtgtcacgttttcccaaaatcgtgtcacg 47676614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 6 - 85
Target Start/End: Complemental strand, 2389843 - 2389764
Alignment:
Q  6 ccaaggtacaaccaaccttatcctgaaaacgggtccagcaagccgaaaatcttgtcacattttcccaaaatcgtgtcacg 85  Q
    ||||||||| |||||||||||||||||||||   ||||||||| ||||||| |||||||||||| |||||||||||||||    
T  2389843 ccaaggtacgaccaaccttatcctgaaaacgttcccagcaagctgaaaatcgtgtcacattttctcaaaatcgtgtcacg 2389764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 4 - 85
Target Start/End: Complemental strand, 2647364 - 2647283
Alignment:
Q  4 acccaaggtacaaccaaccttatcctgaaaacgggtccagcaagccgaaaatcttgtcacattttcccaaaatcgtgtcacg 85  Q
    ||||||||||| ||||||||||||||||||||| | ||||||||  ||||||| |||||| |||||||||||||||| ||||    
T  2647364 acccaaggtacgaccaaccttatcctgaaaacgtgcccagcaagttgaaaatcatgtcacgttttcccaaaatcgtgacacg 2647283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 4 - 85
Target Start/End: Complemental strand, 27347694 - 27347614
Alignment:
Q  4 acccaaggtacaaccaaccttatcctgaaaacgggtccagcaagccgaaaatcttgtcacattttcccaaaatcgtgtcacg 85  Q
    ||||||||||| ||||||||||||||||||||  | ||||||||||||||||| |||||  |||||||||||||||||||||    
T  27347694 acccaaggtacgaccaaccttatcctgaaaacttgcccagcaagccgaaaatcatgtca-gttttcccaaaatcgtgtcacg 27347614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 4 - 85
Target Start/End: Complemental strand, 23554811 - 23554729
Alignment:
Q  4 acccaaggtacaaccaaccttatcctgaaaa-cgggtccagcaagccgaaaatcttgtcacattttcccaaaatcgtgtcacg 85  Q
    |||||| |||| ||||||||||||||||||| |  | |||||||| |||||||| |||||| |||||||||||||||||||||    
T  23554811 acccaatgtacgaccaaccttatcctgaaaaacttgcccagcaagtcgaaaatcgtgtcacgttttcccaaaatcgtgtcacg 23554729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 4 - 85
Target Start/End: Complemental strand, 43864032 - 43863951
Alignment:
Q  4 acccaaggtacaaccaaccttatcctgaaaacgggtccagcaagccgaaaatcttgtcacattttcccaaaatcgtgtcacg 85  Q
    ||||||||||| ||||||||||||||||||||    | | ||| ||||||||| |||||| |||||||||||||||||||||    
T  43864032 acccaaggtacgaccaaccttatcctgaaaactttcctaacaaaccgaaaatcgtgtcacgttttcccaaaatcgtgtcacg 43863951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 4 - 84
Target Start/End: Original strand, 6360527 - 6360607
Alignment:
Q  4 acccaaggtacaaccaaccttatcctgaaaacgggtccagcaagccgaaaatcttgtcacattttcccaaaatcgtgtcac 84  Q
    ||||||| ||| |||||| |||||||||||||  | ||| ||||||||||||| |||||| ||| ||||||||||||||||    
T  6360527 acccaagatacgaccaacattatcctgaaaacttgcccaacaagccgaaaatcgtgtcacgtttccccaaaatcgtgtcac 6360607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 4 - 84
Target Start/End: Complemental strand, 26417084 - 26417004
Alignment:
Q  4 acccaaggtacaaccaaccttatcctgaaaacgggtccagcaagccgaaaatcttgtcacattttcccaaaatcgtgtcac 84  Q
    ||||||||||| |||||||||| |||||||||  ||||| ||| |  |||||| |||||||||| ||||||||||||||||    
T  26417084 acccaaggtacgaccaaccttaccctgaaaacttgtccaacaaactaaaaatcgtgtcacatttccccaaaatcgtgtcac 26417004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 6 - 85
Target Start/End: Original strand, 4538950 - 4539029
Alignment:
Q  6 ccaaggtacaaccaaccttatcctgaaaacgggtccagcaagccgaaaatcttgtcacattttcccaaaatcgtgtcacg 85  Q
    ||||||||| ||||||||| ||||||||||  |   ||||| ||||||||| |||||| |||||||||||||||||||||    
T  4538950 ccaaggtacgaccaaccttgtcctgaaaacttgcttagcaaaccgaaaatcgtgtcacgttttcccaaaatcgtgtcacg 4539029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 6 - 85
Target Start/End: Original strand, 32358453 - 32358532
Alignment:
Q  6 ccaaggtacaaccaaccttatcctgaaaacgggtccagcaagccgaaaatcttgtcacattttcccaaaatcgtgtcacg 85  Q
    ||||||||| | |||| |||||||||||||| | ||||||||| ||||||  |||||| ||||||||||||||| |||||    
T  32358453 ccaaggtacgatcaactttatcctgaaaacgtgcccagcaagctgaaaattgtgtcacgttttcccaaaatcgtatcacg 32358532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 4 - 85
Target Start/End: Original strand, 14070230 - 14070312
Alignment:
Q  4 acccaaggtacaaccaaccttatcctgaaaa-cgggtccagcaagccgaaaatcttgtcacattttcccaaaatcgtgtcacg 85  Q
    ||||||||||| |||||||||||| |||||| |  | | |||||| |||||||| |||||| |||||||||||||||||||||    
T  14070230 acccaaggtacgaccaaccttatcttgaaaaacttgcctagcaagtcgaaaatcgtgtcacgttttcccaaaatcgtgtcacg 14070312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 4 - 85
Target Start/End: Original strand, 14380258 - 14380340
Alignment:
Q  4 acccaaggtacaaccaaccttatcctgaaaa-cgggtccagcaagccgaaaatcttgtcacattttcccaaaatcgtgtcacg 85  Q
    ||||||||||| |||||||||||| |||||| |  | | |||||| |||||||| |||||| |||||||||||||||||||||    
T  14380258 acccaaggtacgaccaaccttatcttgaaaaacttgcctagcaagtcgaaaatcgtgtcacgttttcccaaaatcgtgtcacg 14380340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 4 - 85
Target Start/End: Complemental strand, 4585932 - 4585851
Alignment:
Q  4 acccaaggtacaaccaaccttatcctgaaaacgggtccagcaagccgaaaatcttgtcacattttcccaaaatcgtgtcacg 85  Q
    ||||||||||| |||||||||||  |||||||    ||| |||||| ||||||||||||| |||||||||||| ||||||||    
T  4585932 acccaaggtacgaccaaccttatattgaaaacttacccaacaagccaaaaatcttgtcacgttttcccaaaatagtgtcacg 4585851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 6 - 85
Target Start/End: Original strand, 49092122 - 49092203
Alignment:
Q  6 ccaaggtacaaccaaccttatcctgaaaa-cgggtccagcaagc-cgaaaatcttgtcacattttcccaaaatcgtgtcacg 85  Q
    ||||||||| ||||||||||||||||||| ||   ||||||||  |||||||| ||||||||||||||||||||||| ||||    
T  49092122 ccaaggtacgaccaaccttatcctgaaaaacgtacccagcaagttcgaaaatcgtgtcacattttcccaaaatcgtgacacg 49092203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 4 - 80
Target Start/End: Complemental strand, 18126415 - 18126339
Alignment:
Q  4 acccaaggtacaaccaaccttatcctgaaaacgggtccagcaagccgaaaatcttgtcacattttcccaaaatcgtg 80  Q
    ||||||||||| |||||| |||||||||||||  | ||| ||||||||||||| | |||| |||| |||||||||||    
T  18126415 acccaaggtacgaccaacattatcctgaaaacttgcccaacaagccgaaaatcgtatcacgtttttccaaaatcgtg 18126339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 4 - 80
Target Start/End: Complemental strand, 33332117 - 33332041
Alignment:
Q  4 acccaaggtacaaccaaccttatcctgaaaacgggtccagcaagccgaaaatcttgtcacattttcccaaaatcgtg 80  Q
    ||||||||||| |||||||||||| |||||| | | ||||||||  ||||||| |||||| |||| |||||||||||    
T  33332117 acccaaggtacgaccaaccttatcttgaaaatgtgcccagcaagttgaaaatcgtgtcacgtttttccaaaatcgtg 33332041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 85
Target Start/End: Complemental strand, 48489204 - 48489120
Alignment:
Q  1 acaacccaaggtacaaccaaccttatcctgaaaacgggtccagcaagccgaaaatcttgtcacattttcccaaaatcgtgtcacg 85  Q
    |||||||||||||  ||||||||||||||| || |  | |||||||||| |||| | |||||| ||||||| |||||||||||||    
T  48489204 acaacccaaggtatgaccaaccttatcctggaagcatgcccagcaagccaaaaaccgtgtcacgttttccctaaatcgtgtcacg 48489120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 6 - 85
Target Start/End: Complemental strand, 4796334 - 4796255
Alignment:
Q  6 ccaaggtacaaccaaccttatcctgaaaacgggtccagcaagccgaaaatcttgtcacattttcccaaaatcgtgtcacg 85  Q
    ||||||||| ||||||  ||||||||||||| | ||| ||||  ||||||| |||||| |||| ||||||||||||||||    
T  4796334 ccaaggtacgaccaactctatcctgaaaacgtgcccatcaagttgaaaatcgtgtcacgtttttccaaaatcgtgtcacg 4796255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 7 - 85
Target Start/End: Original strand, 30026400 - 30026477
Alignment:
Q  7 caaggtacaaccaaccttatcctgaaaacgggtccagcaagccgaaaatcttgtcacattttcccaaaatcgtgtcacg 85  Q
    |||||||| ||||||||||||||| ||||| | || |||||| ||||||| |||||| ||| ||||||||| |||||||    
T  30026400 caaggtacgaccaaccttatcctg-aaacgtgcccggcaagctgaaaatcgtgtcacgtttccccaaaatcatgtcacg 30026477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 7 - 95
Target Start/End: Original strand, 496394 - 496481
Alignment:
Q  7 caaggtacaaccaaccttatcctgaaaacgggtccagcaagccgaaaatcttgtcacattttcccaaaatcgtgtcacgttttgcctcc 95  Q
    ||||||| | |||||||||||||||||| | ||| |||| ||| |||| | || ||| ||||||| ||||| |||||||||||||||||    
T  496394 caaggtaaatccaaccttatcctgaaaatgtgtcaagcatgccaaaaaccgtgacacgttttccc-aaatcatgtcacgttttgcctcc 496481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 4 - 85
Target Start/End: Original strand, 79819 - 79902
Alignment:
Q  4 acccaaggtacaaccaaccttatcctgaaaa-cgggtccagcaagcc-gaaaatcttgtcacattttcccaaaatcgtgtcacg 85  Q
    |||||| |||| ||||||||||||||||||| ||   ||||||||   ||||||||||||||||||| ||||||||||| ||||    
T  79819 acccaatgtacgaccaaccttatcctgaaaaacgtacccagcaagtttgaaaatcttgtcacatttttccaaaatcgtgacacg 79902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 4 - 63
Target Start/End: Original strand, 2761699 - 2761758
Alignment:
Q  4 acccaaggtacaaccaaccttatcctgaaaacgggtccagcaagccgaaaatcttgtcac 63  Q
    ||||||||||| ||||| ||||||||||||||  | ||||||||| ||||||| ||||||    
T  2761699 acccaaggtacgaccaatcttatcctgaaaacttgcccagcaagctgaaaatcgtgtcac 2761758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 4 - 85
Target Start/End: Complemental strand, 19495742 - 19495659
Alignment:
Q  4 acccaaggtacaaccaaccttatcctgaaaa-cgggtccagcaagcc-gaaaatcttgtcacattttcccaaaatcgtgtcacg 85  Q
    ||||||||||| ||||||||||||||||||| |  | ||||||||||  |||||| || ||| |||||||||||| ||||||||    
T  19495742 acccaaggtacgaccaaccttatcctgaaaatcttgcccagcaagccaaaaaatcgtggcacgttttcccaaaattgtgtcacg 19495659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 77
Target Start/End: Original strand, 31733354 - 31733420
Alignment:
Q  11 gtacaaccaaccttatcctgaaaacgggtccagcaagccgaaaatcttgtcacattttcccaaaatc 77  Q
    |||| ||||||||||||||||||||  | ||||||||||||||||  |||||| ||| || ||||||    
T  31733354 gtacgaccaaccttatcctgaaaacttgcccagcaagccgaaaattgtgtcacgtttccctaaaatc 31733420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 125 - 167
Target Start/End: Complemental strand, 48491250 - 48491208
Alignment:
Q  125 tcgtgacacggatgtcaaatcgtgtcacgattcttcgctttct 167  Q
    ||||||||||| || ||||||||||||||||||||| ||||||    
T  48491250 tcgtgacacggttgccaaatcgtgtcacgattcttcactttct 48491208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 122 - 167
Target Start/End: Original strand, 34311334 - 34311379
Alignment:
Q  122 aaatcgtgacacggatgtcaaatcgtgtcacgattcttcgctttct 167  Q
    |||||||||||||  || ||||||||||||||||||||| ||||||    
T  34311334 aaatcgtgacacgtttgccaaatcgtgtcacgattcttcactttct 34311379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 84
Target Start/End: Complemental strand, 6570364 - 6570284
Alignment:
Q  4 acccaaggtacaaccaaccttatcctgaaaacgggtccagcaagccgaaaatcttgtcacattttcccaaaatcgtgtcac 84  Q
    ||||||||||| | |||||||||||| |||||| ||| |||| ||| |||||| ||||||  || || ||||| |||||||    
T  6570364 acccaaggtacgatcaaccttatcctaaaaacgtgtcaagcatgccaaaaatcgtgtcacgattgcctaaaattgtgtcac 6570284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 36
Target Start/End: Original strand, 21983672 - 21983704
Alignment:
Q  4 acccaaggtacaaccaaccttatcctgaaaacg 36  Q
    ||||||||||| |||||||||||||||||||||    
T  21983672 acccaaggtacgaccaaccttatcctgaaaacg 21983704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 58; Significance: 1e-24; HSPs: 23)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 4 - 85
Target Start/End: Complemental strand, 30143113 - 30143032
Alignment:
Q  4 acccaaggtacaaccaaccttatcctgaaaacgggtccagcaagccgaaaatcttgtcacattttcccaaaatcgtgtcacg 85  Q
    |||||| |||| |||||||||||||| |||||  ||||||||||||||||||| ||||||||||||||||||||||||||||    
T  30143113 acccaaagtacgaccaaccttatccttaaaacttgtccagcaagccgaaaatcgtgtcacattttcccaaaatcgtgtcacg 30143032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 1 - 85
Target Start/End: Complemental strand, 27811072 - 27810988
Alignment:
Q  1 acaacccaaggtacaaccaaccttatcctgaaaacgggtccagcaagccgaaaatcttgtcacattttcccaaaatcgtgtcacg 85  Q
    |||||||||| ||| ||||||||||||||||||||  | ||||||||||||||||| |||||||||||| |||||||||||||||    
T  27811072 acaacccaagatacgaccaaccttatcctgaaaacttgcccagcaagccgaaaatcgtgtcacattttctcaaaatcgtgtcacg 27810988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 4 - 85
Target Start/End: Complemental strand, 15212557 - 15212476
Alignment:
Q  4 acccaaggtacaaccaaccttatcctgaaaacgggtccagcaagccgaaaatcttgtcacattttcccaaaatcgtgtcacg 85  Q
    ||||||||||| ||||||||||||||||||||  |  |||||||||||||||| |||||| |||||||||||||||||||||    
T  15212557 acccaaggtacgaccaaccttatcctgaaaacttgctcagcaagccgaaaatcgtgtcacgttttcccaaaatcgtgtcacg 15212476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 5 - 85
Target Start/End: Complemental strand, 4731428 - 4731348
Alignment:
Q  5 cccaaggtacaaccaaccttatcctgaaaacgggtccagcaagccgaaaatcttgtcacattttcccaaaatcgtgtcacg 85  Q
    |||||||||| ||||| ||||| ||||||||| ||||||||||||||||||| |||||  |||||||||||||||||||||    
T  4731428 cccaaggtacgaccaatcttattctgaaaacgtgtccagcaagccgaaaatcatgtcatgttttcccaaaatcgtgtcacg 4731348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 4 - 85
Target Start/End: Complemental strand, 22976087 - 22976006
Alignment:
Q  4 acccaaggtacaaccaaccttatcctgaaaacgggtccagcaagccgaaaatcttgtcacattttcccaaaatcgtgtcacg 85  Q
    |||||| |||| || |||||||||||||||||  ||| ||||||| ||||||| |||||| |||||||||||||||||||||    
T  22976087 acccaatgtacgacaaaccttatcctgaaaacttgtcaagcaagctgaaaatcgtgtcacgttttcccaaaatcgtgtcacg 22976006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 4 - 85
Target Start/End: Complemental strand, 40221317 - 40221236
Alignment:
Q  4 acccaaggtacaaccaaccttatcctgaaaacgggtccagcaagccgaaaatcttgtcacattttcccaaaatcgtgtcacg 85  Q
    |||||||| || || |||||||||||||||||| ||||| ||||| ||||||| |||||| |||||||||||||||| ||||    
T  40221317 acccaaggcacgacaaaccttatcctgaaaacgtgtccaacaagctgaaaatcgtgtcacgttttcccaaaatcgtgacacg 40221236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 4 - 85
Target Start/End: Original strand, 42435606 - 42435687
Alignment:
Q  4 acccaaggtacaaccaaccttatcctgaaaacgggtccagcaagccgaaaatcttgtcacattttcccaaaatcgtgtcacg 85  Q
    ||||||||||| ||||||||||||||||||||  | | |||||| |||||||| |||||| ||| |||||||||||||||||    
T  42435606 acccaaggtacgaccaaccttatcctgaaaacttgccaagcaagacgaaaatcgtgtcacgtttccccaaaatcgtgtcacg 42435687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 4 - 85
Target Start/End: Complemental strand, 4733596 - 4733515
Alignment:
Q  4 acccaaggtacaaccaaccttatcctgaaaacgggtccagcaagccgaaaatcttgtcacattttcccaaaatcgtgtcacg 85  Q
    ||||||||||| || |||  ||||||||||||| ||  || |||||||||||| |||||| |||||||||||||||||||||    
T  4733596 acccaaggtacgacaaactgtatcctgaaaacgtgtttagaaagccgaaaatcgtgtcacgttttcccaaaatcgtgtcacg 4733515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 6 - 85
Target Start/End: Original strand, 1746617 - 1746697
Alignment:
Q  6 ccaaggtacaaccaaccttatcctgaaaa-cgggtccagcaagccgaaaatcttgtcacattttcccaaaatcgtgtcacg 85  Q
    ||||||||| ||||||||||||||||||| |  | |||||||||| |||||| ||||||  ||||||||||||||||||||    
T  1746617 ccaaggtacgaccaaccttatcctgaaaatcttgcccagcaagccaaaaatcgtgtcacgatttcccaaaatcgtgtcacg 1746697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 4 - 84
Target Start/End: Complemental strand, 11383559 - 11383479
Alignment:
Q  4 acccaaggtacaaccaaccttatcctgaaaacgggtccagcaagccgaaaatcttgtcacattttcccaaaatcgtgtcac 84  Q
    |||||| |||| |||||||||||| ||||||   | ||||||||| ||||||| |||||| ||||||||||||||||||||    
T  11383559 acccaaagtacgaccaaccttatcttgaaaatttgcccagcaagctgaaaatcgtgtcacgttttcccaaaatcgtgtcac 11383479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 4 - 63
Target Start/End: Complemental strand, 4283099 - 4283040
Alignment:
Q  4 acccaaggtacaaccaaccttatcctgaaaacgggtccagcaagccgaaaatcttgtcac 63  Q
    ||||||||||| ||||||||||||||||||||  | ||||||||||||||||| ||||||    
T  4283099 acccaaggtacgaccaaccttatcctgaaaacttgcccagcaagccgaaaatcgtgtcac 4283040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 6 - 85
Target Start/End: Complemental strand, 43036192 - 43036113
Alignment:
Q  6 ccaaggtacaaccaaccttatcctgaaaacgggtccagcaagccgaaaatcttgtcacattttcccaaaatcgtgtcacg 85  Q
    ||||||||| | ||||||||||||||||||  | ||| |||| |||||||| |||||| |||| ||||||||||||||||    
T  43036192 ccaaggtacgatcaaccttatcctgaaaacttgcccaacaagtcgaaaatcgtgtcacgtttttccaaaatcgtgtcacg 43036113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 11 - 85
Target Start/End: Original strand, 1345775 - 1345848
Alignment:
Q  11 gtacaaccaaccttatcctgaaaacgggtccagcaagccgaaaatcttgtcacattttcccaaaatcgtgtcacg 85  Q
    |||| ||||||||||||||||||||| ||| ||||||| ||||||  |||||||||||| | |||||||||||||    
T  1345775 gtacgaccaaccttatcctgaaaacgtgtcaagcaagctgaaaattgtgtcacattttctc-aaatcgtgtcacg 1345848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 121 - 167
Target Start/End: Complemental strand, 4731313 - 4731267
Alignment:
Q  121 gaaatcgtgacacggatgtcaaatcgtgtcacgattcttcgctttct 167  Q
    ||||||||||||||| |||||||||||||||||||||||| ||||||    
T  4731313 gaaatcgtgacacggttgtcaaatcgtgtcacgattcttcactttct 4731267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 4 - 85
Target Start/End: Complemental strand, 19175400 - 19175318
Alignment:
Q  4 acccaaggtacaaccaaccttatcctgaaaacgggtccagcaag-ccgaaaatcttgtcacattttcccaaaatcgtgtcacg 85  Q
    |||||||||| ||||||||||||||||||||||   ||||||||   ||||||| |||||| |||||||||||||||| ||||    
T  19175400 acccaaggtataaccaaccttatcctgaaaacgtacccagcaagtttgaaaatcatgtcacgttttcccaaaatcgtgacacg 19175318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 4 - 85
Target Start/End: Original strand, 34256901 - 34256983
Alignment:
Q  4 acccaaggtacaaccaaccttatcctgaaaa-cgggtccagcaagccgaaaatcttgtcacattttcccaaaatcgtgtcacg 85  Q
    ||||||||||||||||| ||||||||||||| |  |  ||||||||| |||||| ||||||  ||||||||||||||||||||    
T  34256901 acccaaggtacaaccaatcttatcctgaaaatcttgctcagcaagccaaaaatcgtgtcacgatttcccaaaatcgtgtcacg 34256983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 4 - 85
Target Start/End: Complemental strand, 42497986 - 42497904
Alignment:
Q  4 acccaaggtacaaccaaccttatcctgaaaa-cgggtccagcaagccgaaaatcttgtcacattttcccaaaatcgtgtcacg 85  Q
    ||||||||||| || |||||||||||||||| |  | |||||||||| | |||| ||||||| ||||||||||||||||||||    
T  42497986 acccaaggtacgactaaccttatcctgaaaatcttgcccagcaagccaataatcgtgtcacaatttcccaaaatcgtgtcacg 42497904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 4 - 85
Target Start/End: Original strand, 12703036 - 12703117
Alignment:
Q  4 acccaaggtacaaccaaccttatcctgaaaacgggtccagcaagccgaaaatcttgtcacattttcccaaaatcgtgtcacg 85  Q
    |||||| |||| |||||||||||||||||| |  |   ||||||| ||||||| |||||| |||||||||||||||||||||    
T  12703036 acccaatgtacgaccaaccttatcctgaaagcttgcttagcaagctgaaaatcgtgtcacgttttcccaaaatcgtgtcacg 12703117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 4 - 83
Target Start/End: Original strand, 34254725 - 34254805
Alignment:
Q  4 acccaaggtacaaccaaccttatcctgaaaa-cgggtccagcaagccgaaaatcttgtcacattttcccaaaatcgtgtca 83  Q
    ||||||||||| ||||||||||||||||||| |  | ||||||| || |||||| ||||||  ||||||||||||||||||    
T  34254725 acccaaggtacgaccaaccttatcctgaaaatcttgcccagcaatccaaaaatcgtgtcacgatttcccaaaatcgtgtca 34254805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 4 - 85
Target Start/End: Original strand, 4743590 - 4743672
Alignment:
Q  4 acccaaggtacaaccaaccttatcctgaaaa-cgggtccagcaagccgaaaatcttgtcacattttcccaaaatcgtgtcacg 85  Q
    ||||| ||||| ||||||||||||||||||| || | | |||||| |||||||| |||||| ||| | |||||||||||||||    
T  4743590 acccacggtacgaccaaccttatcctgaaaaacgtgccaagcaagtcgaaaatcgtgtcacgtttcctcaaaatcgtgtcacg 4743672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 4 - 85
Target Start/End: Complemental strand, 10014930 - 10014849
Alignment:
Q  4 acccaaggtacaaccaaccttatcctgaaaacgggtccagcaagccgaaaatcttgtcacattttcccaaaatcgtgtcacg 85  Q
    ||||||||||| ||||||||||||||| ||||| | | |||| ||| |||||| |||||   || |||||||||||||||||    
T  10014930 acccaaggtacgaccaaccttatcctgtaaacgtgccaagcatgccaaaaatcgtgtcatgattgcccaaaatcgtgtcacg 10014849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 6 - 84
Target Start/End: Complemental strand, 31218026 - 31217947
Alignment:
Q  6 ccaaggtacaaccaaccttatcctgaaaa-cgggtccagcaagccgaaaatcttgtcacattttcccaaaatcgtgtcac 84  Q
    ||||||||| |||||||||||||| |||| |  | ||| |||||| |||||| ||||||  |||||||||||||||||||    
T  31218026 ccaaggtacgaccaaccttatcctaaaaatcttgcccaacaagccaaaaatcgtgtcacgatttcccaaaatcgtgtcac 31217947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 36
Target Start/End: Complemental strand, 4696295 - 4696263
Alignment:
Q  4 acccaaggtacaaccaaccttatcctgaaaacg 36  Q
    ||||||||||| |||||||||||||||||||||    
T  4696295 acccaaggtacgaccaaccttatcctgaaaacg 4696263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 57; Significance: 6e-24; HSPs: 24)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 71 - 171
Target Start/End: Original strand, 42298542 - 42298642
Alignment:
Q  71 caaaatcgtgtcacgttttgcctccaggaccaaccatgcattcaacatcagaaatcgtgacacggatgtcaaatcgtgtcacgattcttcgctttcttaa 170  Q
    |||||||||||||| |||||||| ||| ||||| |||||||||  |||||||||||||||||||| || |||||||||||| |||||||| ||||| |||    
T  42298542 caaaatcgtgtcacattttgccttcagaaccaaacatgcattcggcatcagaaatcgtgacacggttgccaaatcgtgtcatgattcttcactttcataa 42298641  T
Q  171 a 171  Q
    |    
T  42298642 a 42298642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 4 - 85
Target Start/End: Complemental strand, 44454930 - 44454849
Alignment:
Q  4 acccaaggtacaaccaaccttatcctgaaaacgggtccagcaagccgaaaatcttgtcacattttcccaaaatcgtgtcacg 85  Q
    |||||||||||||||||||||||| |||||||  | ||||||||||||||||| |||||| ||| |||||||||||||||||    
T  44454930 acccaaggtacaaccaaccttatcttgaaaacttgcccagcaagccgaaaatcgtgtcacgtttccccaaaatcgtgtcacg 44454849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 4 - 85
Target Start/End: Original strand, 37879506 - 37879587
Alignment:
Q  4 acccaaggtacaaccaaccttatcctgaaaacgggtccagcaagccgaaaatcttgtcacattttcccaaaatcgtgtcacg 85  Q
    ||||||||||| |||||||||||||| |||||  |||||| |||| ||||||| ||||||||||| ||||||||||||||||    
T  37879506 acccaaggtacgaccaaccttatcctaaaaacttgtccagtaagctgaaaatcgtgtcacatttttccaaaatcgtgtcacg 37879587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 6 - 90
Target Start/End: Complemental strand, 3156636 - 3156552
Alignment:
Q  6 ccaaggtacaaccaaccttatcctgaaaacgggtccagcaagccgaaaatcttgtcacattttcccaaaatcgtgtcacgttttg 90  Q
    ||||||||| ||||||||||||||||||||| ||||||||| || |||||| ||| |  ||||||||||||||||||||| ||||    
T  3156636 ccaaggtacgaccaaccttatcctgaaaacgtgtccagcaaaccaaaaatcgtgttatgttttcccaaaatcgtgtcacgatttg 3156552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 4 - 85
Target Start/End: Complemental strand, 31659009 - 31658928
Alignment:
Q  4 acccaaggtacaaccaaccttatcctgaaaacgggtccagcaagccgaaaatcttgtcacattttcccaaaatcgtgtcacg 85  Q
    ||||||||||||||||||||||||||||||||    |||||||||  |||||  |||||| |||||||||||||||||||||    
T  31659009 acccaaggtacaaccaaccttatcctgaaaactttcccagcaagcaaaaaattgtgtcacgttttcccaaaatcgtgtcacg 31658928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 4 - 85
Target Start/End: Original strand, 37033684 - 37033765
Alignment:
Q  4 acccaaggtacaaccaaccttatcctgaaaacgggtccagcaagccgaaaatcttgtcacattttcccaaaatcgtgtcacg 85  Q
    ||||||||||||||||||||||||||||||||  | || ||||| |||||||| |||||  ||| || ||||||||||||||    
T  37033684 acccaaggtacaaccaaccttatcctgaaaacttgccctgcaaggcgaaaatcgtgtcatgtttcccgaaaatcgtgtcacg 37033765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 6 - 85
Target Start/End: Complemental strand, 11348270 - 11348191
Alignment:
Q  6 ccaaggtacaaccaaccttatcctgaaaacgggtccagcaagccgaaaatcttgtcacattttcccaaaatcgtgtcacg 85  Q
    |||| |||| ||||||||||||||||||||  | ||| ||||||||||||| |||||| |||  ||||||||||||||||    
T  11348270 ccaatgtacgaccaaccttatcctgaaaacttgcccaacaagccgaaaatcgtgtcacgtttctccaaaatcgtgtcacg 11348191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 4 - 63
Target Start/End: Complemental strand, 29135821 - 29135762
Alignment:
Q  4 acccaaggtacaaccaaccttatcctgaaaacgggtccagcaagccgaaaatcttgtcac 63  Q
    ||||||||||| ||||||||||||||||||||| | ||||||||| ||||||| ||||||    
T  29135821 acccaaggtacgaccaaccttatcctgaaaacgtgcccagcaagctgaaaatcatgtcac 29135762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 4 - 77
Target Start/End: Original strand, 13598830 - 13598904
Alignment:
Q  4 acccaaggtacaaccaaccttatcctgaaaacgggtccagcaag-ccgaaaatcttgtcacattttcccaaaatc 77  Q
    ||||||||||| |||||||||||||||||||||   ||||||||   ||||||| ||||||||||||||||||||    
T  13598830 acccaaggtacgaccaaccttatcctgaaaacgtacccagcaagtttgaaaatcgtgtcacattttcccaaaatc 13598904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 4 - 85
Target Start/End: Complemental strand, 49918120 - 49918039
Alignment:
Q  4 acccaaggtacaaccaaccttatcctgaaaacgggtccagcaagccgaaaatcttgtcacattttcccaaaatcgtgtcacg 85  Q
    ||||||||||  ||||||||||||||||||||| | ||||||||   |||||| |||||| |||| | ||||||||||||||    
T  49918120 acccaaggtatgaccaaccttatcctgaaaacgtgcccagcaagttaaaaatcgtgtcacgtttttcgaaaatcgtgtcacg 49918039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 19 - 85
Target Start/End: Original strand, 4553060 - 4553126
Alignment:
Q  19 aaccttatcctgaaaacgggtccagcaagccgaaaatcttgtcacattttcccaaaatcgtgtcacg 85  Q
    |||||||||||||||||| ||| | |||| |||||||| | |||| ||||| |||||||||||||||    
T  4553060 aaccttatcctgaaaacgtgtcaaacaagtcgaaaatcatatcacgttttctcaaaatcgtgtcacg 4553126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 8 - 85
Target Start/End: Complemental strand, 20762439 - 20762361
Alignment:
Q  8 aaggtacaaccaaccttatcctgaaaa-cgggtccagcaagccgaaaatcttgtcacattttcccaaaatcgtgtcacg 85  Q
    ||||||| ||||||||||||||||||| |  | ||| |||||| |||||| ||||||  ||||||||||||||||||||    
T  20762439 aaggtacgaccaaccttatcctgaaaatcttgcccaacaagccaaaaatcgtgtcacgatttcccaaaatcgtgtcacg 20762361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 4 - 85
Target Start/End: Original strand, 28220623 - 28220705
Alignment:
Q  4 acccaaggtacaaccaaccttatcctgaaaacgggtccagcaa-gccgaaaatcttgtcacattttcccaaaatcgtgtcacg 85  Q
    ||||||||||| |||||||||||| | || ||  |||  |||| |||||||||| |||||| |||||||||||||||||||||    
T  28220623 acccaaggtacgaccaaccttatcttaaatacttgtcgtgcaaagccgaaaatcgtgtcacgttttcccaaaatcgtgtcacg 28220705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 4 - 85
Target Start/End: Original strand, 28223818 - 28223900
Alignment:
Q  4 acccaaggtacaaccaaccttatcctgaaaacgggtccagcaa-gccgaaaatcttgtcacattttcccaaaatcgtgtcacg 85  Q
    ||||||||||| |||||||||||| | || ||  |||  |||| |||||||||| |||||| |||||||||||||||||||||    
T  28223818 acccaaggtacgaccaaccttatcttaaatacttgtcgtgcaaagccgaaaatcgtgtcacgttttcccaaaatcgtgtcacg 28223900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 4 - 85
Target Start/End: Original strand, 37070197 - 37070279
Alignment:
Q  4 acccaaggtacaaccaaccttatcctgaaaacgggtccagcaag-ccgaaaatcttgtcacattttcccaaaatcgtgtcacg 85  Q
    ||||||||||| |||||||||||||||||||||   ||| ||||   ||||||| |||||| |||||||||||||||| ||||    
T  37070197 acccaaggtacgaccaaccttatcctgaaaacgtacccaacaagtttgaaaatcgtgtcacgttttcccaaaatcgtgacacg 37070279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 44 - 85
Target Start/End: Complemental strand, 10924954 - 10924913
Alignment:
Q  44 caagccgaaaatcttgtcacattttcccaaaatcgtgtcacg 85  Q
    ||||||||||||| ||||||||||| ||||||||||||||||    
T  10924954 caagccgaaaatcgtgtcacatttttccaaaatcgtgtcacg 10924913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 33 - 85
Target Start/End: Original strand, 13659726 - 13659778
Alignment:
Q  33 aacgggtccagcaagccgaaaatcttgtcacattttcccaaaatcgtgtcacg 85  Q
    |||| ||| ||||||||||||||| || ||||||||||||||||||| |||||    
T  13659726 aacgtgtcaagcaagccgaaaatcgtgacacattttcccaaaatcgtatcacg 13659778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 4 - 83
Target Start/End: Complemental strand, 193165 - 193086
Alignment:
Q  4 acccaaggtacaaccaaccttatcctgaaaacgggtccagcaagccgaaaatcttgtcacattttcccaaaatcgtgtca 83  Q
    ||||||||||| ||||| |||||||| |||||  | ||||||||||||||||  | |||| |||| ||||||| ||||||    
T  193165 acccaaggtacgaccaatcttatcctaaaaacttgcccagcaagccgaaaatggtatcacgtttttccaaaattgtgtca 193086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 4 - 85
Target Start/End: Complemental strand, 3189123 - 3189040
Alignment:
Q  4 acccaaggta-caaccaaccttatcctgaaaa-cgggtccagcaagccgaaaatcttgtcacattttcccaaaatcgtgtcacg 85  Q
    |||||||||| | |||||||||||||| |||| |  | |||||||| |||||||| |||||| |||||||||||| ||||||||    
T  3189123 acccaaggtaacgaccaaccttatcctaaaaaacttgcccagcaagtcgaaaatcgtgtcacgttttcccaaaattgtgtcacg 3189040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 4 - 85
Target Start/End: Complemental strand, 3197940 - 3197857
Alignment:
Q  4 acccaaggta-caaccaaccttatcctgaaaa-cgggtccagcaagccgaaaatcttgtcacattttcccaaaatcgtgtcacg 85  Q
    |||||||||| | |||||||||||||| |||| |  | |||||||| |||||||| |||||| |||||||||||| ||||||||    
T  3197940 acccaaggtaacgaccaaccttatcctaaaaaacttgcccagcaagtcgaaaatcgtgtcacgttttcccaaaattgtgtcacg 3197857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 4 - 85
Target Start/End: Complemental strand, 3206758 - 3206675
Alignment:
Q  4 acccaaggta-caaccaaccttatcctgaaaa-cgggtccagcaagccgaaaatcttgtcacattttcccaaaatcgtgtcacg 85  Q
    |||||||||| | |||||||||||||| |||| |  | |||||||| |||||||| |||||| |||||||||||| ||||||||    
T  3206758 acccaaggtaacgaccaaccttatcctaaaaaacttgcccagcaagtcgaaaatcgtgtcacgttttcccaaaattgtgtcacg 3206675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 4 - 63
Target Start/End: Original strand, 30476845 - 30476904
Alignment:
Q  4 acccaaggtacaaccaaccttatcctgaaaacgggtccagcaagccgaaaatcttgtcac 63  Q
    ||||||||| |||||||||||||| |||||||  | ||||||| ||||||||| ||||||    
T  30476845 acccaaggttcaaccaaccttatcttgaaaacttgcccagcaaaccgaaaatcgtgtcac 30476904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 3 - 36
Target Start/End: Complemental strand, 16124328 - 16124295
Alignment:
Q  3 aacccaaggtacaaccaaccttatcctgaaaacg 36  Q
    |||||||||||| |||||||||||||||||||||    
T  16124328 aacccaaggtacgaccaaccttatcctgaaaacg 16124295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 84
Target Start/End: Original strand, 22819860 - 22819940
Alignment:
Q  4 acccaaggtacaaccaaccttatcctgaaaacgggtccagcaagccgaaaatcttgtcacattttcccaaaatcgtgtcac 84  Q
    ||||||||||| ||||| ||||| ||||||||| ||| | || ||  |||||| ||||||| |||| ||||||| ||||||    
T  22819860 acccaaggtacgaccaaacttattctgaaaacgtgtcaaacatgcgaaaaatcatgtcacagtttctcaaaatcatgtcac 22819940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 55; Significance: 9e-23; HSPs: 21)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 51 - 165
Target Start/End: Original strand, 1632300 - 1632413
Alignment:
Q  51 aaaatcttgtcacattttcccaaaatcgtgtcacgttttgcctccaggaccaaccatgcattcaacatcagaaatcgtgacacggatgtcaaatcgtgtc 150  Q
    |||||| |||||| |||||| |||||||||||||||||||||| ||| | ||| ||| |||||  |||||||||||||||||||| || |||| ||||||    
T  1632300 aaaatcgtgtcacgttttcc-aaaatcgtgtcacgttttgccttcagaatcaaacattcattcggcatcagaaatcgtgacacggttgccaaaacgtgtc 1632398  T
Q  151 acgattcttcgcttt 165  Q
    |||||||||| ||||    
T  1632399 acgattcttcacttt 1632413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 7 - 85
Target Start/End: Original strand, 36318409 - 36318488
Alignment:
Q  7 caaggtacaaccaaccttatcctgaaaacgggtccagcaagccgaaaatcttgtcacattttccc-aaaatcgtgtcacg 85  Q
    |||||||| ||||||||||||||||||||| | ||||||||||||||||| |||||| ||| ||| ||||||||||||||    
T  36318409 caaggtacgaccaaccttatcctgaaaacgtggccagcaagccgaaaatcgtgtcacgtttccccaaaaatcgtgtcacg 36318488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 4 - 85
Target Start/End: Original strand, 2837241 - 2837322
Alignment:
Q  4 acccaaggtacaaccaaccttatcctgaaaacgggtccagcaagccgaaaatcttgtcacattttcccaaaatcgtgtcacg 85  Q
    ||||||||||| ||||||||||||||||||||    ||||||||  ||||||| |||||| |||||||||||||||||||||    
T  2837241 acccaaggtacgaccaaccttatcctgaaaacttacccagcaaggtgaaaatcgtgtcacgttttcccaaaatcgtgtcacg 2837322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 4 - 85
Target Start/End: Original strand, 20522652 - 20522733
Alignment:
Q  4 acccaaggtacaaccaaccttatcctgaaaacgggtccagcaagccgaaaatcttgtcacattttcccaaaatcgtgtcacg 85  Q
    ||||||||||| ||||||||||||||||||||| | ||||||||  ||||||| |||||| ||||| |||||||||| ||||    
T  20522652 acccaaggtacgaccaaccttatcctgaaaacgtgcccagcaagttgaaaatcgtgtcacgttttctcaaaatcgtgacacg 20522733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 4 - 85
Target Start/End: Original strand, 34389280 - 34389362
Alignment:
Q  4 acccaaggtacaaccaaccttatcctgaaaacgggtccagcaag-ccgaaaatcttgtcacattttcccaaaatcgtgtcacg 85  Q
    ||||||||||| |||||||||||||||||||||   ||||||||   ||||||| |||||| |||||||||||||||||||||    
T  34389280 acccaaggtacgaccaaccttatcctgaaaacgtacccagcaagtttgaaaatcgtgtcacgttttcccaaaatcgtgtcacg 34389362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 4 - 85
Target Start/End: Original strand, 36988472 - 36988554
Alignment:
Q  4 acccaaggtacaaccaaccttatcctgaaaa-cgggtccagcaagccgaaaatcttgtcacattttcccaaaatcgtgtcacg 85  Q
    ||||||||||| ||||||||||||||||||| |  | |||||||| |||||||| |||||| ||||||||||||| |||||||    
T  36988472 acccaaggtacgaccaaccttatcctgaaaaacttgcccagcaagtcgaaaatcgtgtcacgttttcccaaaatcatgtcacg 36988554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 11 - 85
Target Start/End: Complemental strand, 39284661 - 39284587
Alignment:
Q  11 gtacaaccaaccttatcctgaaaacgggtccagcaagccgaaaatcttgtcacattttcccaaaatcgtgtcacg 85  Q
    |||| ||||||||||||||||||||    ||||||||||||||||  |||||| |||||||||||||||||||||    
T  39284661 gtacgaccaaccttatcctgaaaactttcccagcaagccgaaaattgtgtcacgttttcccaaaatcgtgtcacg 39284587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 4 - 80
Target Start/End: Original strand, 17865607 - 17865684
Alignment:
Q  4 acccaaggtacaaccaaccttatcctgaaaacgggtccagcaag-ccgaaaatcttgtcacattttcccaaaatcgtg 80  Q
    ||||||||||| |||||||||||||||||||||   ||||||||   ||||||| |||||||||||||||||||||||    
T  17865607 acccaaggtacgaccaaccttatcctgaaaacgtacccagcaagtttgaaaatcgtgtcacattttcccaaaatcgtg 17865684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 4 - 80
Target Start/End: Complemental strand, 14698676 - 14698600
Alignment:
Q  4 acccaaggtacaaccaaccttatcctgaaaacgggtccagcaagccgaaaatcttgtcacattttcccaaaatcgtg 80  Q
    ||||||||||| ||||||||||||||||||| | | ||| ||||  ||||||| |||||| ||||||||||||||||    
T  14698676 acccaaggtacgaccaaccttatcctgaaaatgtgcccaacaagttgaaaatcgtgtcacgttttcccaaaatcgtg 14698600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 11 - 85
Target Start/End: Complemental strand, 29867644 - 29867569
Alignment:
Q  11 gtacaaccaaccttatcctgaaaa-cgggtccagcaagccgaaaatcttgtcacattttcccaaaatcgtgtcacg 85  Q
    ||||||||||||||||| |||||| |  | |||||||| |||||||| |||||| |||||||||||||||||||||    
T  29867644 gtacaaccaaccttatcttgaaaaacttgcccagcaagtcgaaaatcgtgtcacgttttcccaaaatcgtgtcacg 29867569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 7 - 85
Target Start/End: Complemental strand, 45099523 - 45099444
Alignment:
Q  7 caaggtacaaccaaccttatcctgaaaa-cgggtccagcaagccgaaaatcttgtcacattttcccaaaatcgtgtcacg 85  Q
    |||||||| ||||||||||||||||||| |  | |||||||||| |||||| ||||||| ||||||||||| ||||||||    
T  45099523 caaggtacgaccaaccttatcctgaaaatcttgcccagcaagccaaaaatcgtgtcacaatttcccaaaattgtgtcacg 45099444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 4 - 80
Target Start/End: Complemental strand, 10706920 - 10706843
Alignment:
Q  4 acccaaggtacaaccaaccttatcctgaaaacgggtccagcaag-ccgaaaatcttgtcacattttcccaaaatcgtg 80  Q
    ||||||||||| |||||||||||||| ||||||  |||||||||   ||||||| |||||| ||||||||||||||||    
T  10706920 acccaaggtacgaccaaccttatccttaaaacgtatccagcaagtttgaaaatcgtgtcacgttttcccaaaatcgtg 10706843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 4 - 85
Target Start/End: Original strand, 21630375 - 21630456
Alignment:
Q  4 acccaaggtacaaccaaccttatcctgaaaacgggtccagcaagccgaaaatcttgtcacattttcccaaaatcgtgtcacg 85  Q
    |||||| |||| ||||||||||||||||||||| | ||||||||  ||||||| |||||  |||||||||||| ||| ||||    
T  21630375 acccaaagtacgaccaaccttatcctgaaaacgtgcccagcaagttgaaaatcgtgtcatgttttcccaaaattgtgacacg 21630456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 4 - 85
Target Start/End: Original strand, 39483306 - 39483388
Alignment:
Q  4 acccaaggtacaaccaaccttatcctgaaaacgggtccagcaag-ccgaaaatcttgtcacattttcccaaaatcgtgtcacg 85  Q
    ||||||||||| |||||||||||||||||||||   ||| ||||   ||||||| |||||| |||||||||||||||| ||||    
T  39483306 acccaaggtacgaccaaccttatcctgaaaacgtacccaacaagtttgaaaatcgtgtcacgttttcccaaaatcgtgacacg 39483388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 4 - 81
Target Start/End: Original strand, 35447498 - 35447575
Alignment:
Q  4 acccaaggtacaaccaaccttatcctgaaaacgggtccagcaagccgaaaatcttgtcacattttcccaaaatcgtgt 81  Q
    ||||||||||| | |||||||||| |||||||  | ||  ||| |||| |||| ||||||||||||||||||||||||    
T  35447498 acccaaggtacgagcaaccttatcttgaaaacttgcccgacaaaccgataatcgtgtcacattttcccaaaatcgtgt 35447575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 4 - 63
Target Start/End: Original strand, 5723651 - 5723711
Alignment:
Q  4 acccaaggtacaaccaaccttatcctgaaaa-cgggtccagcaagccgaaaatcttgtcac 63  Q
    ||||||||||| ||||||||||||||||||| |  |||||||||||| |||||| ||||||    
T  5723651 acccaaggtacgaccaaccttatcctgaaaatcttgtccagcaagccaaaaatcgtgtcac 5723711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 73 - 133
Target Start/End: Complemental strand, 17629082 - 17629022
Alignment:
Q  73 aaatcgtgtcacgttttgcctccaggaccaaccatgcattcaacatcagaaatcgtgacac 133  Q
    ||||||||||||| ||||||||||||| ||||| | |||||  | ||||||||||||||||    
T  17629082 aaatcgtgtcacgatttgcctccaggatcaaccttacattctgcctcagaaatcgtgacac 17629022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 19 - 85
Target Start/End: Original strand, 6595406 - 6595473
Alignment:
Q  19 aaccttatcctgaaaa-cgggtccagcaagccgaaaatcttgtcacattttcccaaaatcgtgtcacg 85  Q
    |||||||||||||||| |  | |||||||||| |||||| |||||| |||||||||||| ||||||||    
T  6595406 aaccttatcctgaaaatctagcccagcaagccaaaaatcgtgtcacgttttcccaaaattgtgtcacg 6595473  T

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Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 85
Target Start/End: Complemental strand, 33528291 - 33528209
Alignment:
Q  4 acccaaggtacaaccaaccttatcctgaaaacgggtccagcaagcc-gaaaatcttgtcacattttcccaaaatcgtgtcacg 85  Q
    ||||||||||| | ||||||||| |||||||||   ||||||||   ||||||| |||||| |||||||||||||||| ||||    
T  33528291 acccaaggtacgatcaaccttattctgaaaacgtacccagcaagtttgaaaatcgtgtcacgttttcccaaaatcgtgacacg 33528209  T

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Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 122 - 167
Target Start/End: Complemental strand, 45726460 - 45726415
Alignment:
Q  122 aaatcgtgacacggatgtcaaatcgtgtcacgattcttcgctttct 167  Q
    |||||||||||||| || |||||||||||||| |||||| ||||||    
T  45726460 aaatcgtgacacggttgccaaatcgtgtcacgtttcttcactttct 45726415  T

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Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 63
Target Start/End: Original strand, 2334814 - 2334874
Alignment:
Q  4 acccaaggtacaaccaaccttatcctgaaaa-cgggtccagcaagccgaaaatcttgtcac 63  Q
    ||||||||||| ||||||||||||||||||| |  | |||||||||| |||||| ||||||    
T  2334814 acccaaggtacgaccaaccttatcctgaaaatcttgcccagcaagccaaaaatcgtgtcac 2334874  T

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Target: scaffold0014 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 4 - 85
Target Start/End: Original strand, 80898 - 80979
Alignment:
Q  4 acccaaggtacaaccaaccttatcctgaaaacgggtccagcaagccgaaaatcttgtcacattttcccaaaatcgtgtcacg 85  Q
    ||||||||||| ||||||||||||||||||||  | ||||||||||||||||| || ||| |||||||||||||||||||||    
T  80898 acccaaggtacgaccaaccttatcctgaaaacttgcccagcaagccgaaaatcgtgccacgttttcccaaaatcgtgtcacg 80979  T

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Target: scaffold0286 (Bit Score: 50; Significance: 9e-20; HSPs: 1)
Name: scaffold0286
Description:

Target: scaffold0286; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 4 - 85
Target Start/End: Complemental strand, 11111 - 11030
Alignment:
Q  4 acccaaggtacaaccaaccttatcctgaaaacgggtccagcaagccgaaaatcttgtcacattttcccaaaatcgtgtcacg 85  Q
    |||||| |||| ||||||||||||||||||||  | ||||||| ||||||||| |||||||||| |||||||||||||||||    
T  11111 acccaatgtacgaccaaccttatcctgaaaacttgcccagcaaaccgaaaatcgtgtcacatttccccaaaatcgtgtcacg 11030  T

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Target: chr5 (Bit Score: 50; Significance: 9e-20; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 4 - 85
Target Start/End: Original strand, 42426632 - 42426713
Alignment:
Q  4 acccaaggtacaaccaaccttatcctgaaaacgggtccagcaagccgaaaatcttgtcacattttcccaaaatcgtgtcacg 85  Q
    ||||||||||| ||||||||||||||||||||  | ||||||| ||||||||  |||||| |||||||||||||||||||||    
T  42426632 acccaaggtacgaccaaccttatcctgaaaacttgcccagcaaaccgaaaattgtgtcacgttttcccaaaatcgtgtcacg 42426713  T

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Target: chr5; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 4 - 85
Target Start/End: Complemental strand, 40146820 - 40146739
Alignment:
Q  4 acccaaggtacaaccaaccttatcctgaaaacgggtccagcaagccgaaaatcttgtcacattttcccaaaatcgtgtcacg 85  Q
    ||||||||||| |||||| || ||||||||||| | ||| ||||| |||||||  |||||||||||||||||||||||||||    
T  40146820 acccaaggtacgaccaactttttcctgaaaacgtgaccaacaagctgaaaatcgagtcacattttcccaaaatcgtgtcacg 40146739  T

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Target: chr5; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 4 - 63
Target Start/End: Complemental strand, 535674 - 535615
Alignment:
Q  4 acccaaggtacaaccaaccttatcctgaaaacgggtccagcaagccgaaaatcttgtcac 63  Q
    ||||||||||| ||||||||||||||||||||  ||||||||||||||||||| ||||||    
T  535674 acccaaggtacgaccaaccttatcctgaaaacttgtccagcaagccgaaaatcgtgtcac 535615  T

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Target: chr5; HSP #4
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 4 - 63
Target Start/End: Original strand, 39468929 - 39468988
Alignment:
Q  4 acccaaggtacaaccaaccttatcctgaaaacgggtccagcaagccgaaaatcttgtcac 63  Q
    ||||||||||| |||||||||||||| |||||| ||||||||||||||||||| ||||||    
T  39468929 acccaaggtacgaccaaccttatcctaaaaacgtgtccagcaagccgaaaatcgtgtcac 39468988  T

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Target: chr5; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 4 - 85
Target Start/End: Complemental strand, 32636595 - 32636513
Alignment:
Q  4 acccaaggtacaaccaaccttatcctgaaaa-cgggtccagcaagccgaaaatcttgtcacattttcccaaaatcgtgtcacg 85  Q
    ||||||||||| ||||||||||||||||||| |  | |||||||| |||||||| || ||| |||||||||||||||||||||    
T  32636595 acccaaggtacgaccaaccttatcctgaaaaacttgcccagcaagtcgaaaatcgtgccacgttttcccaaaatcgtgtcacg 32636513  T

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Target: chr5; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 11 - 85
Target Start/End: Complemental strand, 38746534 - 38746460
Alignment:
Q  11 gtacaaccaaccttatcctgaaaacgggtccagcaagccgaaaatcttgtcacattttcccaaaatcgtgtcacg 85  Q
    |||| ||||||||||||||||||||  ||||||||||||||||||| |||||| |||| ||||||  ||||||||    
T  38746534 gtacgaccaaccttatcctgaaaacttgtccagcaagccgaaaatcgtgtcacgtttttccaaaaatgtgtcacg 38746460  T

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Target: chr5; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 11 - 85
Target Start/End: Original strand, 42428822 - 42428896
Alignment:
Q  11 gtacaaccaaccttatcctgaaaacgggtccagcaagccgaaaatcttgtcacattttcccaaaatcgtgtcacg 85  Q
    |||| |||||||||||||| |||||  | |||||||||| |||||| |||||| |||||||||||||||||||||    
T  42428822 gtacgaccaaccttatcctaaaaacttgcccagcaagccaaaaatcgtgtcacgttttcccaaaatcgtgtcacg 42428896  T

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Target: chr5; HSP #8
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 4 - 85
Target Start/End: Complemental strand, 13239523 - 13239442
Alignment:
Q  4 acccaaggtacaaccaaccttatcctgaaaacgggtccagcaagccgaaaatcttgtcacattttcccaaaatcgtgtcacg 85  Q
    ||||||||||| ||||||||||||||||||||  |||||||||| | || ||| |||||| ||| ||||||||| |||||||    
T  13239523 acccaaggtacgaccaaccttatcctgaaaacttgtccagcaagtcaaagatcgtgtcacgtttacccaaaatcttgtcacg 13239442  T

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Target: chr5; HSP #9
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 4 - 85
Target Start/End: Complemental strand, 13487974 - 13487895
Alignment:
Q  4 acccaaggtacaaccaaccttatcctgaaaacgggtccagcaagccgaaaatcttgtcacattttcccaaaatcgtgtcacg 85  Q
    ||||||||||| ||||||||||||||||||||  | |||||||||||||||||  ||    |||||||||||||||||||||    
T  13487974 acccaaggtacgaccaaccttatcctgaaaacttgcccagcaagccgaaaatc--gtgctgttttcccaaaatcgtgtcacg 13487895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 11 - 85
Target Start/End: Original strand, 30683312 - 30683386
Alignment:
Q  11 gtacaaccaaccttatcctgaaaacgggtccagcaagccgaaaatcttgtcacattttcccaaaatcgtgtcacg 85  Q
    |||| ||||||||||||||||||||  | | |||||| |||||||| |||||| |||||||||||| ||||||||    
T  30683312 gtacgaccaaccttatcctgaaaacttgcctagcaagtcgaaaatcgtgtcacgttttcccaaaattgtgtcacg 30683386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 4 - 63
Target Start/End: Complemental strand, 19806177 - 19806118
Alignment:
Q  4 acccaaggtacaaccaaccttatcctgaaaacgggtccagcaagccgaaaatcttgtcac 63  Q
    ||||||||||| |||||||||||||| |||||| | | ||||||||||||||| ||||||    
T  19806177 acccaaggtacgaccaaccttatcctaaaaacgtgcctagcaagccgaaaatcgtgtcac 19806118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 4 - 85
Target Start/End: Complemental strand, 37438917 - 37438835
Alignment:
Q  4 acccaaggtacaaccaaccttatcctgaaaa-cgggtccagcaagccgaaaatcttgtcacattttcccaaaatcgtgtcacg 85  Q
    ||||||||||| || |||||||||||||||| |  | ||| |||||| |||||| |||||| ||||||||||||| |||||||    
T  37438917 acccaaggtacgacaaaccttatcctgaaaatcttgcccaacaagccaaaaatcgtgtcacgttttcccaaaatcatgtcacg 37438835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 8 - 85
Target Start/End: Complemental strand, 5057598 - 5057521
Alignment:
Q  8 aaggtacaaccaaccttatcctgaaaacgggtccagcaagccgaaaatcttgtcacattttcccaaaatcgtgtcacg 85  Q
    ||||||| ||||||||||||||||||||  |  || |||| |||||||  |||||| |||| ||||||||||||||||    
T  5057598 aaggtacgaccaaccttatcctgaaaacttgctcaacaagtcgaaaattgtgtcacgttttaccaaaatcgtgtcacg 5057521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 4 - 63
Target Start/End: Complemental strand, 27015085 - 27015026
Alignment:
Q  4 acccaaggtacaaccaaccttatcctgaaaacgggtccagcaagccgaaaatcttgtcac 63  Q
    ||||||||||| ||||||||||||||||||||  | ||| ||||| ||||||| ||||||    
T  27015085 acccaaggtacgaccaaccttatcctgaaaacatgcccaacaagctgaaaatcgtgtcac 27015026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 77
Target Start/End: Original strand, 14520659 - 14520733
Alignment:
Q  4 acccaaggtacaaccaaccttatcctgaaaacgggtccagcaag-ccgaaaatcttgtcacattttcccaaaatc 77  Q
    ||||||||||| |||||||||||||||||||||   ||| ||||   ||||||| |||||| |||||||||||||    
T  14520659 acccaaggtacgaccaaccttatcctgaaaacgtacccaacaagtttgaaaatcgtgtcacgttttcccaaaatc 14520733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 11 - 63
Target Start/End: Complemental strand, 533545 - 533493
Alignment:
Q  11 gtacaaccaaccttatcctgaaaacgggtccagcaagccgaaaatcttgtcac 63  Q
    |||| ||||||||||||||||||||  | ||||||||||||||| | ||||||    
T  533545 gtacgaccaaccttatcctgaaaacttgcccagcaagccgaaaaccgtgtcac 533493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 36
Target Start/End: Complemental strand, 12083845 - 12083813
Alignment:
Q  4 acccaaggtacaaccaaccttatcctgaaaacg 36  Q
    ||||||||||| |||||||||||||||||||||    
T  12083845 acccaaggtacgaccaaccttatcctgaaaacg 12083813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0176 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: scaffold0176
Description:

Target: scaffold0176; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 10 - 85
Target Start/End: Original strand, 17667 - 17742
Alignment:
Q  10 ggtacaaccaaccttatcctgaaaacgggtccagcaagccgaaaatcttgtcacattttcccaaaatcgtgtcacg 85  Q
    ||||| |||||||||||| ||||| |  | |||||||||| |||||| |||||| |||||||||||||||||||||    
T  17667 ggtacgaccaaccttatcatgaaagcttgcccagcaagccaaaaatcgtgtcacgttttcccaaaatcgtgtcacg 17742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0066 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: scaffold0066
Description:

Target: scaffold0066; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 4 - 83
Target Start/End: Original strand, 20812 - 20891
Alignment:
Q  4 acccaaggtacaaccaaccttatcctgaaaacgggtccagcaagccgaaaatcttgtcacattttcccaaaatcgtgtca 83  Q
    ||||||||||| ||||||||||| || |||||    ||| ||||||||||||| |||||| |||||||||||||||||||    
T  20812 acccaaggtacgaccaaccttattctaaaaactttcccaacaagccgaaaatcgtgtcacgttttcccaaaatcgtgtca 20891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 2)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 4 - 77
Target Start/End: Original strand, 6115 - 6189
Alignment:
Q  4 acccaaggtacaaccaaccttatcctgaaaacgggtccagcaag-ccgaaaatcttgtcacattttcccaaaatc 77  Q
    ||||||||||| |||||||||||||||||||||   ||||||||   ||||||| ||||||||||||||||||||    
T  6115 acccaaggtacgaccaaccttatcctgaaaacgtacccagcaagtttgaaaatcgtgtcacattttcccaaaatc 6189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 33 - 85
Target Start/End: Original strand, 149487 - 149539
Alignment:
Q  33 aacgggtccagcaagccgaaaatcttgtcacattttcccaaaatcgtgtcacg 85  Q
    |||| ||| ||||||||||||||| || ||||||||||||||||||| |||||    
T  149487 aacgtgtcaagcaagccgaaaatcgtgacacattttcccaaaatcgtatcacg 149539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 6 - 85
Target Start/End: Complemental strand, 434302 - 434221
Alignment:
Q  6 ccaaggtacaaccaaccttatcctgaaaa-cgggtccagcaagcc-gaaaatcttgtcacattttcccaaaatcgtgtcacg 85  Q
    ||||||||| ||||||||||||||||||| |  | ||||||||||  |||||| ||||||  ||||||||||||||||||||    
T  434302 ccaaggtacgaccaaccttatcctgaaaatcttgcccagcaagccaaaaaatcgtgtcacgatttcccaaaatcgtgtcacg 434221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0466 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0466
Description:

Target: scaffold0466; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 4 - 36
Target Start/End: Complemental strand, 6880 - 6848
Alignment:
Q  4 acccaaggtacaaccaaccttatcctgaaaacg 36  Q
    |||||||||||||||||||||||||||||||||    
T  6880 acccaaggtacaaccaaccttatcctgaaaacg 6848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0087 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0087
Description:

Target: scaffold0087; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 4 - 90
Target Start/End: Complemental strand, 36500 - 36413
Alignment:
Q  4 acccaaggtacaaccaaccttatcctgaaaacgggtccagcaag-ccgaaaatcttgtcacattttcccaaaatcgtgtcacgttttg 90  Q
    ||||||||||| |||||||||||||||||||||   ||||||||   ||||||  |||||| ||||| |||||||||| |||| ||||    
T  36500 acccaaggtacgaccaaccttatcctgaaaacgtacccagcaagtttgaaaattgtgtcacgttttcacaaaatcgtgccacgatttg 36413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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