View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17886_low_34 (Length: 224)
Name: NF17886_low_34
Description: NF17886
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17886_low_34 |
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Alignment Details
Target: chr7 (Bit Score: 164; Significance: 8e-88; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 164; E-Value: 8e-88
Query Start/End: Original strand, 29 - 208
Target Start/End: Complemental strand, 25632174 - 25631995
Alignment:
| Q |
29 |
tcattaggtcctttaggaatagcccgtcaagttggaaatttttattcactttaccgtttaataattcataatcaaatatcaataatgaaaattttccaat |
128 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||| ||||||| |
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| T |
25632174 |
tcattaggtcctttaggaatagcccgtcaagttggaaatttgtattcactttaccgtttaataactcataatcaaatatcaataatgaaaaatttccaac |
25632075 |
T |
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| Q |
129 |
ttgacaaaataacggaaatttttcaagtaattaaatattatttaatggatgaaaatgataaaatttttaaacccgatcta |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25632074 |
ttgacaaaataacggaaatttttcaagtaattaaatattatttaatggatgaaaatgataaaatttttaaacccgatcta |
25631995 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 29 - 208
Target Start/End: Complemental strand, 48191933 - 48191754
Alignment:
| Q |
29 |
tcattaggtcctttaggaatagcccgtcaagttggaaatttttattcactttaccgtttaataattcataatcaaatatcaataatgaaaattttccaat |
128 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||| |
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| T |
48191933 |
tcattaggtcctttaggaatagcccgtcaagttggaaatttttattcactttaccgtttaatagctcataatcaaatatcaataatgaaaaatttccaac |
48191834 |
T |
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| Q |
129 |
ttgacaaaataacggaaatttttcaagtaattaaatattatttaatggatgaaaatgataaaatttttaaacccgatcta |
208 |
Q |
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||||||||||||||||||||||| |||| |||||||||||||||||||| ||||||||||| |||||||||||||||||| |
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| T |
48191833 |
ttgacaaaataacggaaattttttaagtcattaaatattatttaatggacgaaaatgataatatttttaaacccgatcta |
48191754 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 160; Significance: 2e-85; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 29 - 208
Target Start/End: Complemental strand, 18146721 - 18146542
Alignment:
| Q |
29 |
tcattaggtcctttaggaatagcccgtcaagttggaaatttttattcactttaccgtttaataattcataatcaaatatcaataatgaaaattttccaat |
128 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||| ||||||| |
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| T |
18146721 |
tcattaggtcctttaggaatagcccgtcaagttggaaatttttattcactttaccatttaataactcataatcaaatatcaataatgaaaaatttccaac |
18146622 |
T |
|
| Q |
129 |
ttgacaaaataacggaaatttttcaagtaattaaatattatttaatggatgaaaatgataaaatttttaaacccgatcta |
208 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
18146621 |
ttgacaaaataacggaaatttttcaagtaattaaatattatttaatggacgaaaatgataaaatttttaaacccgatcta |
18146542 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 148; Significance: 3e-78; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 29 - 208
Target Start/End: Original strand, 18411847 - 18412026
Alignment:
| Q |
29 |
tcattaggtcctttaggaatagcccgtcaagttggaaatttttattcactttaccgtttaataattcataatcaaatatcaataatgaaaattttccaat |
128 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||| |
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| T |
18411847 |
tcattaggtcctttaggaatagcccgtcaagttgaaaatttttattcactttaccatttaataactcataatcaaatatcaataatgaaaattttccaac |
18411946 |
T |
|
| Q |
129 |
ttgacaaaataacggaaatttttcaagtaattaaatattatttaatggatgaaaatgataaaatttttaaacccgatcta |
208 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||| |||||| |
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| T |
18411947 |
ttgataaaataacggaaatttttcaagtaattaaatattatttaatggacgaaaatgataaattttttaaacctgatcta |
18412026 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 124; Significance: 6e-64; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 29 - 172
Target Start/End: Complemental strand, 17510456 - 17510313
Alignment:
| Q |
29 |
tcattaggtcctttaggaatagcccgtcaagttggaaatttttattcactttaccgtttaataattcataatcaaatatcaataatgaaaattttccaat |
128 |
Q |
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|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||| |||||||||||||||||||||||||| ||||||| |
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| T |
17510456 |
tcattaggtcctttaggaatagcccgtcaagtttgaaatttttattcactttaccatttaataactcataatcaaatatcaataatgaaaaatttccaac |
17510357 |
T |
|
| Q |
129 |
ttgacaaaataacggaaatttttcaagtaattaaatattattta |
172 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17510356 |
ttgacaaaataacggaaatttttcaagtaattaaatattattta |
17510313 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 100; Significance: 1e-49; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 29 - 208
Target Start/End: Original strand, 6044868 - 6045038
Alignment:
| Q |
29 |
tcattaggtcctttaggaatagcccgtcaagttggaaatttttattcactttaccgtttaataattcataatcaaatatcaataatgaaaattttccaat |
128 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||| || ||| |
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| T |
6044868 |
tcattaggtcctttagaaatagcccgtcaagttgga---------tcactttaccgtttaataactcataatcaaatatcaataatgaaaaaatttcaac |
6044958 |
T |
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| Q |
129 |
ttgacaaaataacggaaatttttcaagtaattaaatattatttaatggatgaaaatgataaaatttttaaacccgatcta |
208 |
Q |
| |
|
|||| ||||||||||||| |||| ||||||||||||||||||||||||| ||||||||||||||||||||| || ||||| |
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| T |
6044959 |
ttgaaaaaataacggaaaatttttaagtaattaaatattatttaatggacgaaaatgataaaatttttaaatccaatcta |
6045038 |
T |
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Target: chr6 (Bit Score: 69; Significance: 4e-31; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 71 - 159
Target Start/End: Original strand, 9837382 - 9837470
Alignment:
| Q |
71 |
tattcactttaccgtttaataattcataatcaaatatcaataatgaaaattttccaatttgacaaaataacggaaatttttcaagtaat |
159 |
Q |
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||||||||||||| |||||||| |||||||||||||||||||||||||| ||| ||| ||||||||||||||||||||||||||||||| |
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| T |
9837382 |
tattcactttaccatttaataactcataatcaaatatcaataatgaaaaattttcaacttgacaaaataacggaaatttttcaagtaat |
9837470 |
T |
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