View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17886_low_36 (Length: 208)
Name: NF17886_low_36
Description: NF17886
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17886_low_36 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 175; Significance: 2e-94; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 16 - 194
Target Start/End: Original strand, 42975795 - 42975973
Alignment:
| Q |
16 |
aataaacattagtaccggtattttttagttcgatgaatcgaagcaacgagggttgaatttcattatacgagaattcaacttacaattgttccaagcataa |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42975795 |
aataaacattagtaccggtattttttagttcgatgaatcgaagcaacaagggttgaatttcattatacgagaattcaacttacaattgttccaagcataa |
42975894 |
T |
|
| Q |
116 |
ggattcaagtaaagtgacttgccatcaggcctaatgcgaaaaggaccaatttcttccgaagcaccataagcaatggaag |
194 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42975895 |
ggattcaagtaaagtgacttgccatcaggcctaatgcgaaaaggaccaatttcttccgaagcaccataagcaatggaag |
42975973 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 93 - 194
Target Start/End: Original strand, 42981769 - 42981870
Alignment:
| Q |
93 |
acttacaattgttccaagcataaggattcaagtaaagtgacttgccatcaggcctaatgcgaaaaggaccaatttcttccgaagcaccataagcaatgga |
192 |
Q |
| |
|
||||||||||||||||||||||| |||||||| ||||||| ||||||||||||||||| |||||||||||||||||||| ||||||||||||||||| || |
|
|
| T |
42981769 |
acttacaattgttccaagcataacgattcaagaaaagtgatttgccatcaggcctaatacgaaaaggaccaatttcttcagaagcaccataagcaataga |
42981868 |
T |
|
| Q |
193 |
ag |
194 |
Q |
| |
|
|| |
|
|
| T |
42981869 |
ag |
42981870 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University