View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17886_low_37 (Length: 202)
Name: NF17886_low_37
Description: NF17886
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17886_low_37 |
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Alignment Details
Target: chr8 (Bit Score: 82; Significance: 6e-39; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 82; E-Value: 6e-39
Query Start/End: Original strand, 16 - 101
Target Start/End: Complemental strand, 31559819 - 31559734
Alignment:
| Q |
16 |
attctggaaaagagaatagacaaaaaccatgtattcattaaagatgatgaagtaagatacttcaaattttcaatcatacacataat |
101 |
Q |
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| T |
31559819 |
attctggaaaagagaatagacaaaaaccaagtattcattaaagatgatgaagtaagatacttcaaattttcaatcatacacataat |
31559734 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 23 - 89
Target Start/End: Complemental strand, 31556796 - 31556730
Alignment:
| Q |
23 |
aaaagagaatagacaaaaaccatgtattcattaaagatgatgaagtaagatacttcaaattttcaat |
89 |
Q |
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| T |
31556796 |
aaaagagaatagacaaaaaccatgtattcattaaagatgctgaaataagatacttcaaattttcaat |
31556730 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 150 - 187
Target Start/End: Complemental strand, 31559685 - 31559648
Alignment:
| Q |
150 |
taaccagctgaaaatttactgtcaatgcatatataatt |
187 |
Q |
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| T |
31559685 |
taaccagctgaaaatttactgtcaatgcatatataatt |
31559648 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 150 - 187
Target Start/End: Complemental strand, 31556684 - 31556647
Alignment:
| Q |
150 |
taaccagctgaaaatttactgtcaatgcatatataatt |
187 |
Q |
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| T |
31556684 |
taaccagctgaaaatttattgtcaatgtatatataatt |
31556647 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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