View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17886_low_5 (Length: 512)
Name: NF17886_low_5
Description: NF17886
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17886_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 259; Significance: 1e-144; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 188 - 494
Target Start/End: Original strand, 3608799 - 3609106
Alignment:
| Q |
188 |
tgattctaaacaatgcaatcaagatccaagattatattttcaccccctaatttttcttcacttttaagtgatttagttatgtgactttgttgatccatct |
287 |
Q |
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| T |
3608799 |
tgattctaaacaatgcaatcaagatccaagattatattttcaccccctaaattttcttcacttttaagtgatttagttatgtgactttgttgatccatct |
3608898 |
T |
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| Q |
288 |
tattcattgtttttaagagtatcatccatgtttcaatatgctttgcacaatcaatattttaaagaactttgtaaacagcttgtcgagagagatctaactt |
387 |
Q |
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| T |
3608899 |
tactcattgtttttaagagtatcatccatgtttcaatatgctttgcacaatcaatattttaaagaactttgtaaacagtttgtcgagagaggtctaactt |
3608998 |
T |
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| Q |
388 |
actacatggtcgagttgtgctattctgagaattataaaagacattgaa-nnnnnnngatgatactcgtggtttaacacaatgttgggttacgacactagt |
486 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||| |
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| T |
3608999 |
actacatggtcgagttgtgctattctgagaattataaaagacattgaattttttttggtgatactcgtggtttaacacaatgttgggttacgacactagt |
3609098 |
T |
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| Q |
487 |
gttattca |
494 |
Q |
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| T |
3609099 |
gttattca |
3609106 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 10 - 121
Target Start/End: Original strand, 3608621 - 3608732
Alignment:
| Q |
10 |
attatactttctcattagtaggtcataaaatttgacttcgagttaactaacaaagattgatatgaaatataggcaacaagtgtggtgaatgtacaaaaat |
109 |
Q |
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|||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
3608621 |
attagactttctccttagtaggtcataaaatttgacttcgagttaactaacaaagattgatatgaaatataggcaataagtgtggtgaatgtacaaaaat |
3608720 |
T |
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| Q |
110 |
acaaaggtgcgc |
121 |
Q |
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| T |
3608721 |
acaaaggtgcgc |
3608732 |
T |
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