View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17886_low_6 (Length: 510)
Name: NF17886_low_6
Description: NF17886
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17886_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 480; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 480; E-Value: 0
Query Start/End: Original strand, 11 - 494
Target Start/End: Complemental strand, 40465923 - 40465440
Alignment:
| Q |
11 |
cataggagagatattgggagaattcatttgattcttctggtttgatcgatatactttttgttcaacatcttcatccttgatatttttcttaggttcaggt |
110 |
Q |
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| T |
40465923 |
cataggagagatattgggagaattcatttgattcttctggtttgatcgatatacttttggttcaacatcttcatccttgatatttttcttaggttcaggt |
40465824 |
T |
|
| Q |
111 |
gagaaaatattgattttatcggaatccacagatgcatcataatgctcagaatccaaatcgtcttcaatctcttcaattatgctctcctgcataaggtaat |
210 |
Q |
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| T |
40465823 |
gagaaaatattgattttatcggaatccacagatgcatcataatgctcagaatccaaatcgtcttcaatctcttcaattatgctctcctgcataaggtaat |
40465724 |
T |
|
| Q |
211 |
ttatcataacgcctatatgaatgtgctactataaatccattgatcaaaagctatattattagcaataaacaaacatatagataactttctattaccttag |
310 |
Q |
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| T |
40465723 |
ttatcataacgcctatatgaatgtgctactataaatccattgatcaaaagctatattattagcaataaacaaacatatagataactttctattaccttag |
40465624 |
T |
|
| Q |
311 |
cagcccatagtgatgattgttccccctttgaatggttggaatttgaagctatattctctctgttgaaattcagaatccgaaaagtacatgcaagaattag |
410 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40465623 |
cagcccatagtgatgattgttccccctttgaatggttggaatttgaagctatattctctctgttgaaattcagaatccgaaaagtacatgcaagaattag |
40465524 |
T |
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| Q |
411 |
gaggttcagatgaaataaaatgcatgttgaactttcttaagctaagttgttttggtactgaatcataaaacacatgagtagaat |
494 |
Q |
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| T |
40465523 |
gaggttcagatgaaataaaatgcatgttgaactttcttaagctaagttgttttggtactgaatcataaaacacatgagtagaat |
40465440 |
T |
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