View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17886_low_9 (Length: 459)
Name: NF17886_low_9
Description: NF17886
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17886_low_9 |
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Alignment Details
Target: chr7 (Bit Score: 298; Significance: 1e-167; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 19 - 444
Target Start/End: Complemental strand, 15637100 - 15636668
Alignment:
| Q |
19 |
acaagttaaatggattggttaaagggtatagacctaaggcaagtccagcttttgatatcagaaatcattcaaatttacacaagaaggcgatgcgaaagga |
118 |
Q |
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| T |
15637100 |
acaagttaaatggattggttaaagggtatagacctaaggcaagtccagctttcgatatcagaaatcattcaaatttacacaagaaggcgatgcgaaagga |
15637001 |
T |
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| Q |
119 |
atgataaacgatcgtttacannnnnnnnnnnnatagatgtttcattgttatttttcacaagatggtgatgatatatatcgagcttatatgcat----att |
214 |
Q |
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| T |
15637000 |
atgataaacgatcgtttagattttttgcttttacagatgtttcattgttatttttcacaagatggtgatgatatatatcgagcttatatgcatgcatatt |
15636901 |
T |
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| Q |
215 |
cttttgaattaataaatatatgtaaatattttcacnnnnnnnn---atcaatatcaatcctatcctattgaggagaacattatttttaaattctgaagtg |
311 |
Q |
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| T |
15636900 |
cttttgaattaataaatatatgcaaatatgttcactttttttttttatcaatatcaatcctatcctcatgaggagaacattatttttgaatcctaaagtg |
15636801 |
T |
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| Q |
312 |
accaatttgagaatttaagtatctgtttctctgactctaatagcaactaagagtatcaacattcaagagcaaaatgttttgtaacccttatttgatatgt |
411 |
Q |
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| T |
15636800 |
accaatttgagaatttaagtatctgtttctctgactctaatagcaactaagagtatcaacattcaagagcaaaatgttttgtaacccttatttgatatgt |
15636701 |
T |
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| Q |
412 |
tatgttatcctattgaattcataacctcctttg |
444 |
Q |
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| T |
15636700 |
tatgttatcctattgaattcctaacctcctttg |
15636668 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 19 - 136
Target Start/End: Complemental strand, 15587194 - 15587077
Alignment:
| Q |
19 |
acaagttaaatggattggttaaagggtatagacctaaggcaagtccagcttttgatatcagaaatcattcaaatttacacaagaaggcgatgcgaaagga |
118 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||| |
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| T |
15587194 |
acaagttaaatggattggttaaagggtatagacctaaggcaagtccagcttttgatatcagaaatcattcaaatttacacaagaaggtgatgggaaagga |
15587095 |
T |
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| Q |
119 |
atgataaacgatcgttta |
136 |
Q |
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| T |
15587094 |
atgataaacgatcgttta |
15587077 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 388 - 444
Target Start/End: Complemental strand, 15587072 - 15587016
Alignment:
| Q |
388 |
ttttgtaacccttatttgatatgttatgttatcctattgaattcataacctcctttg |
444 |
Q |
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| T |
15587072 |
ttttgtaacccttatttgatatgttatgttatcctaatgaattcataccctcttttg |
15587016 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 19 - 94
Target Start/End: Complemental strand, 15645766 - 15645691
Alignment:
| Q |
19 |
acaagttaaatggattggttaaagggtatagacctaaggcaagtccagcttttgatatcagaaatcattcaaattt |
94 |
Q |
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|||||| |||| ||||||||||||||||||||||| |||||||||| | |||||| | | || ||||||||||| |
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| T |
15645766 |
acaagtcaaatcgattggttaaagggtatagacctgtggcaagtccatcctttgattttaacaagcattcaaattt |
15645691 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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