View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17887_low_3 (Length: 241)

Name: NF17887_low_3
Description: NF17887
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17887_low_3
NF17887_low_3
[»] chr3 (21 HSPs)
chr3 (1-241)||(9841372-9841612)
chr3 (1-241)||(10263215-10263455)
chr3 (1-241)||(10431356-10431596)
chr3 (1-241)||(10519999-10520239)
chr3 (1-241)||(9852253-9852493)
chr3 (1-216)||(10034517-10034732)
chr3 (1-241)||(10373157-10373397)
chr3 (1-200)||(10361157-10361356)
chr3 (71-241)||(10583097-10583267)
chr3 (1-241)||(10129439-10129676)
chr3 (30-241)||(10666009-10666220)
chr3 (91-241)||(9980070-9980220)
chr3 (12-241)||(10091319-10091551)
chr3 (12-241)||(10198201-10198433)
chr3 (34-196)||(10503129-10503291)
chr3 (47-202)||(13852815-13852970)
chr3 (12-241)||(11771759-11771988)
chr3 (151-241)||(11779297-11779387)
chr3 (6-241)||(10531180-10531415)
chr3 (155-200)||(10680127-10680172)
chr3 (37-123)||(10680010-10680096)
[»] scaffold0083 (1 HSPs)
scaffold0083 (1-241)||(54917-55157)
[»] chr2 (1 HSPs)
chr2 (1-196)||(26909402-26909597)
[»] chr8 (2 HSPs)
chr8 (60-202)||(11487602-11487744)
chr8 (145-191)||(44955024-44955070)


Alignment Details
Target: chr3 (Bit Score: 177; Significance: 2e-95; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 9841372 - 9841612
Alignment:
Q  1 atttatattacagaaaggtcttcacctcggtcgtcgagcctcgaatcacttataatcgtatcccatgattcaattgaattatttgaagtcaagcttaaga 100  Q
    ||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  9841372 atttatatttcagaaaggtcttcacctctgtcgtcgagcctcgaatcacttataatcgaatcccatgattcaattgaattatttgaagtcaagcttaaga 9841471  T
Q  101 tggacatgctcaccgctcttgaaaggttggatatgacatgtcaaaagctgtcattttgtgaaggagtttgtctccctcccaaattacaatcaattgtgat 200  Q
    ||||||||||||| |||||||||| |||| || | | ||||  | || ||||||||||||||||||||||||| ||||||||||||||||||||||  ||    
T  9841472 tggacatgctcacagctcttgaaatgttgaatctaaaatgtgcagagttgtcattttgtgaaggagtttgtctacctcccaaattacaatcaattgctat 9841571  T
Q  201 ttctacccaaaaaacagcaccgccggttacggaatggggtc 241  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  9841572 ttctacccaaaaaacagcaccgccggttacggaatggggtc 9841612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 10263215 - 10263455
Alignment:
Q  1 atttatattacagaaaggtcttcacctcggtcgtcgagcctcgaatcacttataatcgtatcccatgattcaattgaattatttgaagtcaagcttaaga 100  Q
    |||||||||  |||||||||||||||||||||||||||||||||||||||||  |||  |||||||||||||||||||||||||||||||||||||||||    
T  10263215 atttatattttagaaaggtcttcacctcggtcgtcgagcctcgaatcacttactatcaaatcccatgattcaattgaattatttgaagtcaagcttaaga 10263314  T
Q  101 tggacatgctcaccgctcttgaaaggttggatatgacatgtcaaaagctgtcattttgtgaaggagtttgtctccctcccaaattacaatcaattgtgat 200  Q
    |||| ||||||||||||||||||||||||  | | ||||||  | || ||||||||| ||||||||||||||| |||||||||||||||||||||| |||    
T  10263315 tggaaatgctcaccgctcttgaaaggttgtttctaacatgtgcagagttgtcattttctgaaggagtttgtctacctcccaaattacaatcaattgagat 10263414  T
Q  201 ttctacccaaaaaacagcaccgccggttacggaatggggtc 241  Q
    |||||||||||||||| ||||||||||||||||||||||||    
T  10263415 ttctacccaaaaaacaacaccgccggttacggaatggggtc 10263455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 10431596 - 10431356
Alignment:
Q  1 atttatattacagaaaggtcttcacctcggtcgtcgagcctcgaatcacttataatcgtatcccatgattcaattgaattatttgaagtcaagcttaaga 100  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||   |||  ||||||| |||||||||||||||||||||||||||||||||    
T  10431596 atttatatttcagaaaggtcttcacctcggtcgtcgagcctcgaatcactttatatcagatcccattattcaattgaattatttgaagtcaagcttaaga 10431497  T
Q  101 tggacatgctcaccgctcttgaaaggttggatatgacatgtcaaaagctgtcattttgtgaaggagtttgtctccctcccaaattacaatcaattgtgat 200  Q
    |||||||||||||||||||||||| |||| |||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||  | |    
T  10431496 tggacatgctcaccgctcttgaaaagttgcatatgaaatgtcaaaagctgtcattttgtgaaggagtttgtctacctcccaaattacaatcaatttggtt 10431397  T
Q  201 ttctacccaaaaaacagcaccgccggttacggaatggggtc 241  Q
    |||  | | || || | | ||||||||||||||||||||||    
T  10431396 ttcatctcgaagaataactccgccggttacggaatggggtc 10431356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 10519999 - 10520239
Alignment:
Q  1 atttatattacagaaaggtcttcacctcggtcgtcgagcctcgaatcacttataatcgtatcccatgattcaattgaattatttgaagtcaagcttaaga 100  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||   ||| |||||| |||||||||||||||||||||||||||||||||||    
T  10519999 atttatatttcagaaaggtcttcacctcggtcgtcgagcctcgaatcacttgagatcatatcccctgattcaattgaattatttgaagtcaagcttaaga 10520098  T
Q  101 tggacatgctcaccgctcttgaaaggttggatatgacatgtcaaaagctgtcattttgtgaaggagtttgtctccctcccaaattacaatcaattgtgat 200  Q
    ||||||||||||| |||||||||||||||  | |    |||  | || ||||||||||||||||||||||||| ||||||||||| |||||||||  |||    
T  10520099 tggacatgctcacagctcttgaaaggttgactctagattgtgtagagttgtcattttgtgaaggagtttgtctacctcccaaattgcaatcaattaagat 10520198  T
Q  201 ttctacccaaaaaacagcaccgccggttacggaatggggtc 241  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  10520199 ttctacccaaaaaacagcaccgccggttacggaatggggtc 10520239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 9852253 - 9852493
Alignment:
Q  1 atttatattacagaaaggtcttcacctcggtcgtcgagcctcgaatcacttataatcgtatcccatgattcaattgaattatttgaagtcaagcttaaga 100  Q
    |||||||||  |||||||||||||||||||||||| |||||| ||||||||   |||  ||||||| |||||||||||||||||||||||||||||||||    
T  9852253 atttatattttagaaaggtcttcacctcggtcgtcaagcctccaatcacttcggatcaaatcccataattcaattgaattatttgaagtcaagcttaaga 9852352  T
Q  101 tggacatgctcaccgctcttgaaaggttggatatgacatgtcaaaagctgtcattttgtgaaggagtttgtctccctcccaaattacaatcaattgtgat 200  Q
    |||||||||||||||||||||||   ||| |||||| ||| |||||| ||||||||| ||||||||||||||| ||||||||||||  | ||||||||||    
T  9852353 tggacatgctcaccgctcttgaagatttgcatatgaaatgccaaaagttgtcattttctgaaggagtttgtctacctcccaaattaagaacaattgtgat 9852452  T
Q  201 ttctacccaaaaaacagcaccgccggttacggaatggggtc 241  Q
    ||||||| |||||||||||||||||||||||||||||||||    
T  9852453 ttctaccaaaaaaacagcaccgccggttacggaatggggtc 9852493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 1 - 216
Target Start/End: Original strand, 10034517 - 10034732
Alignment:
Q  1 atttatattacagaaaggtcttcacctcggtcgtcgagcctcgaatcacttataatcgtatcccatgattcaattgaattatttgaagtcaagcttaaga 100  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||   |||| |||||||||||||||||||||||||||||||||||||||||    
T  10034517 atttatatttcagaaaggtcttcacctcggtcgtcgagcctcgaatcacttcatatcgaatcccatgattcaattgaattatttgaagtcaagcttaaga 10034616  T
Q  101 tggacatgctcaccgctcttgaaaggttggatatgacatgtcaaaagctgtcattttgtgaaggagtttgtctccctcccaaattacaatcaattgtgat 200  Q
    ||||||||||||| ||||||||||||||| || | | ||||  | || ||||||||||||||||||||||||| |||||||||||||||||||||  |||    
T  10034617 tggacatgctcacagctcttgaaaggttgaatctaaaatgtgcagagttgtcattttgtgaaggagtttgtctacctcccaaattacaatcaattacgat 10034716  T
Q  201 ttctacccaaaaaaca 216  Q
    |||  |||||| ||||    
T  10034717 ttcatcccaaagaaca 10034732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 10373397 - 10373157
Alignment:
Q  1 atttatattacagaaaggtcttcacctcggtcgtcgagcctcgaatcacttataatcgtatcccatgattcaattgaattatttgaagtcaagcttaaga 100  Q
    |||| |||| |||||||  ||||||||||||||||||||||||||||||||   ||| | ||||||| ||||||||||||||||||||||||||||||||    
T  10373397 atttgtatttcagaaagtccttcacctcggtcgtcgagcctcgaatcacttcagatcttctcccatgcttcaattgaattatttgaagtcaagcttaaga 10373298  T
Q  101 tggacatgctcaccgctcttgaaaggttggatatgacatgtcaaaagctgtcattttgtgaaggagtttgtctccctcccaaattacaatcaattgtgat 200  Q
    |||||||||||||||||||||||||||||  | ||  ||||| | || ||||||||||||||||||||||||| |||| ||||||||||||||||  |||    
T  10373297 tggacatgctcaccgctcttgaaaggttgagtttgggatgtcgagagttgtcattttgtgaaggagtttgtctacctctcaaattacaatcaatttggat 10373198  T
Q  201 ttctacccaaaaaacagcaccgccggttacggaatggggtc 241  Q
    |||  | | || || | ||||||||||||||||||||||||    
T  10373197 ttcatctcgaagaataacaccgccggttacggaatggggtc 10373157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 1 - 200
Target Start/End: Complemental strand, 10361356 - 10361157
Alignment:
Q  1 atttatattacagaaaggtcttcacctcggtcgtcgagcctcgaatcacttataatcgtatcccatgattcaattgaattatttgaagtcaagcttaaga 100  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  10361356 atttatatttcagaaaggtcttcacctcggtcgtcgagcctcgaatcacttataatcatatcccatgattcaattgaattatttgaagtcaagcttaaga 10361257  T
Q  101 tggacatgctcaccgctcttgaaaggttggatatgacatgtcaaaagctgtcattttgtgaaggagtttgtctccctcccaaattacaatcaattgtgat 200  Q
    |||||| |||  ||||||||||| |||||  | |    || | | || |||| |||||||||||||||||||| ||||||||||||||||||||| ||||    
T  10361256 tggacacgcttgccgctcttgaacggttgactctagattggccagagttgtcgttttgtgaaggagtttgtctacctcccaaattacaatcaattatgat 10361157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 71 - 241
Target Start/End: Original strand, 10583097 - 10583267
Alignment:
Q  71 caattgaattatttgaagtcaagcttaagatggacatgctcaccgctcttgaaaggttggatatgacatgtcaaaagctgtcattttgtgaaggagtttg 170  Q
    ||||||||||||||||||||||| |||||||||| |||||||||||||||||||  ||| |||||| ||| |||||| ||||||||| ||||||||||||    
T  10583097 caattgaattatttgaagtcaagtttaagatggaaatgctcaccgctcttgaaaatttgcatatgaaatgccaaaagttgtcattttctgaaggagtttg 10583196  T
Q  171 tctccctcccaaattacaatcaattgtgatttctacccaaaaaacagcaccgccggttacggaatggggtc 241  Q
    ||| |||| |||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  10583197 tctacctctcaaattacgatcaattgtgatttttacccaaaaaacagcaccgccggttacggaatggggtc 10583267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 10129439 - 10129676
Alignment:
Q  1 atttatattacagaaaggtcttcacctcggtcgtcgagcctcgaatcacttataatcgtatcccatgattcaattgaattatttgaagtcaagcttaaga 100  Q
    ||||||||| |||||||||||||||||||||||||   |||| ||||||||   ||| ||||||||||||||||||||||||||||||||||||||||||    
T  10129439 atttatatttcagaaaggtcttcacctcggtcgtc---cctcaaatcactttatatcatatcccatgattcaattgaattatttgaagtcaagcttaaga 10129535  T
Q  101 tggacatgctcaccgctcttgaaaggttggatatgacatgtcaaaagctgtcattttgtgaaggagtttgtctccctcccaaattacaatcaattgtgat 200  Q
    | ||||||||||| ||||||||||||||| || | | ||||  | || ||||||||||||||||||||||||| |||||||||||||||||||||| |||    
T  10129536 ttgacatgctcacagctcttgaaaggttgaatctaaaatgtgcagagttgtcattttgtgaaggagtttgtctacctcccaaattacaatcaattgagat 10129635  T
Q  201 ttctacccaaaaaacagcaccgccggttacggaatggggtc 241  Q
         || ||| |||||||||||| || || ||||||||||    
T  10129636 acagtccaaaagaacagcaccgcctgtgacagaatggggtc 10129676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 30 - 241
Target Start/End: Original strand, 10666009 - 10666220
Alignment:
Q  30 gtcgtcgagcctcgaatcacttataatcgtatcccatgattcaattgaattatttgaagtcaagcttaagatggacatgctcaccgctcttgaaaggttg 129  Q
    ||||||||| ||||||  |||| | |||  |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||    
T  10666009 gtcgtcgagactcgaagaacttgtgatcagatcccatgattcaattgaattatttgaagtcaagcttaagatggacatgctcactgctcttgaaaagttg 10666108  T
Q  130 gatatgacatgtcaaaagctgtcattttgtgaaggagtttgtctccctcccaaattacaatcaattgtgatttctacccaaaaaacagcaccgccggtta 229  Q
      | | | ||||  | || ||||||||||||||||||||||||| ||||||||||||||| |||||||||||||  | |||| || | | ||||||||||    
T  10666109 attctaagatgtgcacagttgtcattttgtgaaggagtttgtctacctcccaaattacaaacaattgtgatttcatctcaaagaataactccgccggtta 10666208  T
Q  230 cggaatggggtc 241  Q
    ||||||||||||    
T  10666209 cggaatggggtc 10666220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 91 - 241
Target Start/End: Original strand, 9980070 - 9980220
Alignment:
Q  91 aagcttaagatggacatgctcaccgctcttgaaaggttggatatgacatgtcaaaagctgtcattttgtgaaggagtttgtctccctcccaaattacaat 190  Q
    |||||||||||||| |||||| |||| |||||||  ||| |||||| ||| |||||| ||||||||| ||||||||||||||| |||| |||||||||||    
T  9980070 aagcttaagatggaaatgctctccgcccttgaaaatttgcatatgaaatgccaaaagttgtcattttctgaaggagtttgtctacctctcaaattacaat 9980169  T
Q  191 caattgtgatttctacccaaaaaacagcaccgccggttacggaatggggtc 241  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  9980170 caattgtgatttctaccaaaaaaacagcaccgccggttacggaatggggtc 9980220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 12 - 241
Target Start/End: Original strand, 10091319 - 10091551
Alignment:
Q  12 agaaaggtcttcacctcggtcgtcgagcctcgaatcacttataatcgtatcccatgattcaattgaattatttgaagtcaagcttaagatggacatgctc 111  Q
    ||||| ||||||||||||||| ||||||||| |||  |||   |||  ||||||||||||||||||||| ||| ||||||||||| ||||| ||  ||||    
T  10091319 agaaatgtcttcacctcggtcctcgagcctccaatatcttgagatcagatcccatgattcaattgaattgtttaaagtcaagcttcagatgaactcgctc 10091418  T
Q  112 accgctcttgaaaggttggatatgacatgtcaaaa---gctgtcattttgtgaaggagtttgtctccctcccaaattacaatcaattgtgatttctaccc 208  Q
    ||||| ||||| | ||||  | ||| ||||| |     | ||||||||||||||||||||||||| |||||||||||||||   ||||| |||| | ||     
T  10091419 accgcccttgagaagttgtttctgaaatgtcgaggagtgttgtcattttgtgaaggagtttgtctacctcccaaattacaaaagattgttattttttcca 10091518  T
Q  209 aaaaaacagcaccgccggttacggaatggggtc 241  Q
    |||||| | ||||||||||||||||||||||||    
T  10091519 aaaaaataacaccgccggttacggaatggggtc 10091551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 12 - 241
Target Start/End: Original strand, 10198201 - 10198433
Alignment:
Q  12 agaaaggtcttcacctcggtcgtcgagcctcgaatcacttataatcgtatcccatgattcaattgaattatttgaagtcaagcttaagatggacatgctc 111  Q
    ||||| ||||||||||||||| ||||||||| |||  |||   |||  ||||||||||||||||||||| ||| ||||||||||| ||||| ||  ||||    
T  10198201 agaaatgtcttcacctcggtcctcgagcctccaatatcttgagatcagatcccatgattcaattgaattgtttaaagtcaagcttcagatgaacgcgctc 10198300  T
Q  112 accgctcttgaaaggttggatatgacatgtcaaaagctgt---cattttgtgaaggagtttgtctccctcccaaattacaatcaattgtgatttctaccc 208  Q
    ||||| ||||| | ||||  | ||| ||||| |   ||||   |||||||||||||||||||||| |||||||||||||||   ||||| |||| | ||     
T  10198301 accgcccttgagaagttgtttctgaaatgtcgaggactgttgtcattttgtgaaggagtttgtctacctcccaaattacaaaagattgttattttttcca 10198400  T
Q  209 aaaaaacagcaccgccggttacggaatggggtc 241  Q
    |||||| | ||||||||||||||||||||||||    
T  10198401 aaaaaataacaccgccggttacggaatggggtc 10198433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 34 - 196
Target Start/End: Original strand, 10503129 - 10503291
Alignment:
Q  34 tcgagcctcgaatcacttataatcgtatcccatgattcaattgaattatttgaagtcaagcttaagatggacatgctcaccgctcttgaaaggttggata 133  Q
    ||||||||| ||||||||   |||  ||||||||||||| |||||| |||||||||||||||| ||||| ||| |||||| |||||||||  ||||||      
T  10503129 tcgagcctccaatcacttcatatccaatcccatgattcagttgaatcatttgaagtcaagcttcagatgaacacgctcacggctcttgaagagttggact 10503228  T
Q  134 tgacatgtcaaaagctgtcattttgtgaaggagtttgtctccctcccaaattacaatcaattg 196  Q
    ||   |||||  || | ||||||||||||||||||||||| ||||||||||||||||||||||    
T  10503229 tggattgtcaggagttatcattttgtgaaggagtttgtcttcctcccaaattacaatcaattg 10503291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 47 - 202
Target Start/End: Complemental strand, 13852970 - 13852815
Alignment:
Q  47 cacttataatcgtatcccatgattcaattgaattatttgaagtcaagcttaagatggacatgctcaccgctcttgaaaggttggatatgacatgtcaaaa 146  Q
    ||||| |||||  ||||||||| ||||||| || | || |||| ||||||  |||||||| ||| |||||||||||| |||||||  ||  ||||| | |    
T  13852970 cacttgtaatcaaatcccatgactcaattggatcacttaaagtgaagcttcggatggacacgcttaccgctcttgaacggttggacttggaatgtcgaga 13852871  T
Q  147 gctgtcattttgtgaaggagtttgtctccctcccaaattacaatcaattgtgattt 202  Q
    | ||||||||||||||||||||||||| ||||| ||||||||||||||||||||||    
T  13852870 gttgtcattttgtgaaggagtttgtctacctcctaaattacaatcaattgtgattt 13852815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 12 - 241
Target Start/End: Original strand, 11771759 - 11771988
Alignment:
Q  12 agaaaggtcttcacctcggtcgtcgagcctcgaatcacttataatcgtatcccatgattcaattgaattatttgaagtcaagcttaagatggacatgctc 111  Q
    ||||| ||||||||||||||| ||||||||| |||  |||   |||  ||||||||||||||||||||| ||| |||||||||||  |||| ||  |||     
T  11771759 agaaatgtcttcacctcggtcctcgagcctccaatatcttgagatcagatcccatgattcaattgaattgtttaaagtcaagcttcggatgaactcgctt 11771858  T
Q  112 accgctcttgaaaggttggatatgacatgtcaaaagctgtcattttgtgaaggagtttgtctccctcccaaattacaatcaattgtgatttctacccaaa 211  Q
    ||||||||||| | ||||  | |||       |  | | ||||||||||||||||||||||| |||||||| |||||||||||||||| || | ||||||    
T  11771859 accgctcttgagaagttgtttctgaatcaaggagtgttttcattttgtgaaggagtttgtctacctcccaacttacaatcaattgtgagtttttcccaaa 11771958  T
Q  212 aaacagcaccgccggttacggaatggggtc 241  Q
     |||| |||| || ||||| ||||||||||    
T  11771959 taacaacaccaccagttacagaatggggtc 11771988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 151 - 241
Target Start/End: Complemental strand, 11779387 - 11779297
Alignment:
Q  151 tcattttgtgaaggagtttgtctccctcccaaattacaatcaattgtgatttctacccaaaaaacagcaccgccggttacggaatggggtc 241  Q
    |||||||||||| |||||||||| ||||||||||||||||||||||||| || | |||||| |||| |||| || ||||| ||||||||||    
T  11779387 tcattttgtgaaagagtttgtctacctcccaaattacaatcaattgtgagtttttcccaaataacaacaccaccagttacagaatggggtc 11779297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 6 - 241
Target Start/End: Original strand, 10531180 - 10531415
Alignment:
Q  6 tattacagaaaggtcttcacctcggtcgtcgagcctcgaatcacttataatcgtatcccatgattcaattgaattatttgaagtcaagcttaagatggac 105  Q
    |||| |||||||  || ||| |||||| || ||||||  |||||||| ||||  ||||||||||||||||| |||  || |||||||||||  |||||||    
T  10531180 tatttcagaaagtcctccacgtcggtcatcaagcctccgatcacttaaaatcaaatcccatgattcaattggattgcttaaagtcaagcttcggatggac 10531279  T
Q  106 atgctcaccgctcttgaaaggttggatatgacatgtcaaaagctgtcattttgtgaaggagtttgtctccctcccaaattacaatcaattgtgatttcta 205  Q
    | |||||| |||||||||   |||  | |    ||||   || ||| ||||||||||||| ||||||| |||||||||||||||||||||||||| |||     
T  10531280 acgctcactgctcttgaacaattgactctagattgtcccgagttgttattttgtgaaggaatttgtctacctcccaaattacaatcaattgtgatatctt 10531379  T
Q  206 cccaaaaaacagcaccgccggttacggaatggggtc 241  Q
     ||||| | || | ||||| || || ||||||||||    
T  10531380 tccaaagagcaacgccgcctgtaacagaatggggtc 10531415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 155 - 200
Target Start/End: Original strand, 10680127 - 10680172
Alignment:
Q  155 tttgtgaaggagtttgtctccctcccaaattacaatcaattgtgat 200  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||    
T  10680127 tttgtgaaggagtttgtctacctcccaaattacaatcaattgtgat 10680172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 37 - 123
Target Start/End: Original strand, 10680010 - 10680096
Alignment:
Q  37 agcctcgaatcacttataatcgtatcccatgattcaattgaattatttgaagtcaagcttaagatggacatgctcaccgctcttgaa 123  Q
    |||||| ||||||||| ||||  ||| ||||||||||||| | |  || |||||||||||  |||||||| |||||| |||||||||    
T  10680010 agcctccaatcacttaaaatcaaatcacatgattcaattggactgcttaaagtcaagcttcggatggacacgctcactgctcttgaa 10680096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0083 (Bit Score: 157; Significance: 1e-83; HSPs: 1)
Name: scaffold0083
Description:

Target: scaffold0083; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 55157 - 54917
Alignment:
Q  1 atttatattacagaaaggtcttcacctcggtcgtcgagcctcgaatcacttataatcgtatcccatgattcaattgaattatttgaagtcaagcttaaga 100  Q
    |||| |||| |||||||  ||||||||||||||||||||||||||||||||||||||| ||||  | |||||||||||||||||||||||||||||||||    
T  55157 atttgtatttcagaaagtccttcacctcggtcgtcgagcctcgaatcacttataatcgaatcctgttattcaattgaattatttgaagtcaagcttaaga 55058  T
Q  101 tggacatgctcaccgctcttgaaaggttggatatgacatgtcaaaagctgtcattttgtgaaggagtttgtctccctcccaaattacaatcaattgtgat 200  Q
    |||| |||||| |||| |||||||  ||| |||||| ||| |||||| ||||||||| ||||||||||||||| |||| |||||||||||||||||||||    
T  55057 tggaaatgctctccgcccttgaaaatttgcatatgaaatgccaaaagttgtcattttctgaaggagtttgtctacctctcaaattacaatcaattgtgat 54958  T
Q  201 ttctacccaaaaaacagcaccgccggttacggaatggggtc 241  Q
    ||||||| |||||||||||||||||||||||||||||||||    
T  54957 ttctaccaaaaaaacagcaccgccggttacggaatggggtc 54917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 72; Significance: 7e-33; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 1 - 196
Target Start/End: Original strand, 26909402 - 26909597
Alignment:
Q  1 atttatattacagaaaggtcttcacctcggtcgtcgagcctcgaatcacttataatcgtatcccatgattcaattgaattatttgaagtcaagcttaaga 100  Q
    ||||||||| ||||||   |||||| |||| |||| ||||| |||||||||| ||||  ||||||||||||||||||||||||| |||| ||||||  ||    
T  26909402 atttatatttcagaaactccttcacatcggccgtcaagccttgaatcacttaaaatcaaatcccatgattcaattgaattatttaaagtgaagcttcgga 26909501  T
Q  101 tggacatgctcaccgctcttgaaaggttggatatgacatgtcaaaagctgtcattttgtgaaggagtttgtctccctcccaaattacaatcaattg 196  Q
    |||||| |||||| | |||||||  |||| || ||   |||| | || |||||||||||||||| |||||||| |||||||| |||||||||||||    
T  26909502 tggacacgctcacagatcttgaacagttgtatctggactgtcgagagttgtcattttgtgaaggtgtttgtctacctcccaacttacaatcaattg 26909597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 60 - 202
Target Start/End: Original strand, 11487602 - 11487744
Alignment:
Q  60 atcccatgattcaattgaattatttgaagtcaagcttaagatggacatgctcaccgctcttgaaaggttggatatgacatgtcaaaagctgtcattttgt 159  Q
    ||||||||| ||||||| || | || ||||||| |||  ||||||||||||||| |||||||||   |||  | |||  |||| | || |||||||||||    
T  11487602 atcccatgactcaattggatcacttcaagtcaaacttcggatggacatgctcactgctcttgaagttttgtctctgaattgtccagagttgtcattttgt 11487701  T
Q  160 gaaggagtttgtctccctcccaaattacaatcaattgtgattt 202  Q
    ||||  |||| ||| |||||||||||| ||||||||| |||||    
T  11487702 gaagatgtttctctacctcccaaattagaatcaattgagattt 11487744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 145 - 191
Target Start/End: Complemental strand, 44955070 - 44955024
Alignment:
Q  145 aagctgtcattttgtgaaggagtttgtctccctcccaaattacaatc 191  Q
    |||||||||||||||||||| ||||| || |||||||||||||||||    
T  44955070 aagctgtcattttgtgaaggtgtttgcctacctcccaaattacaatc 44955024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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