View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17888_high_13 (Length: 329)

Name: NF17888_high_13
Description: NF17888
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17888_high_13
NF17888_high_13
[»] chr3 (20 HSPs)
chr3 (219-316)||(31282341-31282438)
chr3 (31-114)||(31282574-31282657)
chr3 (219-303)||(55423609-55423693)
chr3 (103-187)||(31282470-31282554)
chr3 (31-114)||(55423390-55423473)
chr3 (31-114)||(31280966-31281049)
chr3 (114-187)||(55423504-55423577)
chr3 (33-114)||(55425641-55425722)
chr3 (32-114)||(46496863-46496945)
chr3 (33-90)||(46495493-46495550)
chr3 (107-187)||(46495598-46495678)
chr3 (33-104)||(17029658-17029729)
chr3 (229-299)||(46495722-46495792)
chr3 (33-114)||(21515260-21515340)
chr3 (30-114)||(40896785-40896869)
chr3 (121-187)||(21515543-21515609)
chr3 (35-97)||(40892156-40892218)
chr3 (19-97)||(30155735-30155815)
chr3 (127-183)||(21128046-21128102)
chr3 (127-183)||(43346386-43346442)
[»] chr4 (14 HSPs)
chr4 (219-316)||(28656921-28657018)
chr4 (32-114)||(28657185-28657267)
chr4 (103-187)||(28657050-28657134)
chr4 (31-114)||(28655567-28655650)
chr4 (219-316)||(11243550-11243649)
chr4 (32-98)||(11243806-11243872)
chr4 (32-114)||(20825434-20825515)
chr4 (107-168)||(11243705-11243766)
chr4 (118-187)||(9791706-9791775)
chr4 (121-187)||(2162727-2162793)
chr4 (32-98)||(20827578-20827644)
chr4 (145-183)||(56000426-56000464)
chr4 (146-183)||(1188986-1189023)
chr4 (119-187)||(10168714-10168783)
[»] chr6 (5 HSPs)
chr6 (102-187)||(7312215-7312300)
chr6 (107-187)||(24756986-24757066)
chr6 (49-114)||(6889079-6889144)
chr6 (49-113)||(5645562-5645626)
chr6 (49-117)||(8286387-8286455)
[»] chr1 (10 HSPs)
chr1 (30-114)||(2628301-2628385)
chr1 (35-90)||(13875104-13875159)
chr1 (32-90)||(43356945-43357003)
chr1 (35-98)||(43356839-43356902)
chr1 (118-187)||(21507180-21507249)
chr1 (229-299)||(13876466-13876536)
chr1 (145-187)||(11661712-11661754)
chr1 (49-114)||(10579652-10579717)
chr1 (127-184)||(51299404-51299461)
chr1 (127-187)||(8092719-8092779)
[»] scaffold0176 (1 HSPs)
scaffold0176 (33-90)||(16038-16095)
[»] chr2 (5 HSPs)
chr2 (27-98)||(2717834-2717905)
chr2 (31-114)||(28544991-28545074)
chr2 (120-187)||(2277401-2277468)
chr2 (121-187)||(18971228-18971294)
chr2 (121-187)||(34147254-34147320)
[»] chr7 (4 HSPs)
chr7 (107-187)||(7354608-7354688)
chr7 (49-114)||(39383821-39383886)
chr7 (258-299)||(43460642-43460683)
chr7 (34-114)||(29861496-29861576)
[»] chr8 (7 HSPs)
chr8 (232-299)||(3138680-3138747)
chr8 (229-299)||(42836084-42836154)
chr8 (118-187)||(3138793-3138862)
chr8 (121-187)||(42100039-42100105)
chr8 (121-187)||(45395085-45395151)
chr8 (49-114)||(21524634-21524699)
chr8 (120-156)||(42835976-42836012)
[»] chr5 (8 HSPs)
chr5 (127-183)||(12830877-12830933)
chr5 (127-183)||(12862857-12862913)
chr5 (121-187)||(32757943-32758009)
chr5 (49-114)||(1155980-1156045)
chr5 (49-114)||(14858552-14858617)
chr5 (49-114)||(36442236-36442301)
chr5 (49-114)||(42382150-42382215)
chr5 (127-183)||(15856654-15856710)
[»] scaffold0128 (1 HSPs)
scaffold0128 (146-187)||(22123-22164)


Alignment Details
Target: chr3 (Bit Score: 86; Significance: 4e-41; HSPs: 20)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 219 - 316
Target Start/End: Complemental strand, 31282438 - 31282341
Alignment:
Q  219 caaaaaagaaacggctagatcatttaaatatatcgtatattacaatgaaccatcaacacgtaactttttctccttttcttccttccaccctcatttct 316  Q
    |||||||| |||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31282438 caaaaaaggaacggctagatcatttaagtatatcgtatgttacaatgaaccatcaacacgtaactttttctccttttcttccttccaccctcatttct 31282341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 31 - 114
Target Start/End: Complemental strand, 31282657 - 31282574
Alignment:
Q  31 taggcttaattatataaatggtccctcaacttatttgttgatttcgatatggtcccttaattctaaaaattttcattttggtcc 114  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  31282657 taggcttaattatataaatggtccctcaacttatttgttgttttcgatatggtcccttaattctaaaaattttcattttggtcc 31282574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 219 - 303
Target Start/End: Original strand, 55423609 - 55423693
Alignment:
Q  219 caaaaaagaaacggctagatcatttaaatatatcgtatattacaatgaaccatcaacacgtaactttttctccttttcttccttc 303  Q
    |||||||| |||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  55423609 caaaaaaggaacggctagatcatttaagtatatcgtatgttacaatgaaccatcaacacgtaactttttctccttttcttccttc 55423693  T

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Target: chr3; HSP #4
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 103 - 187
Target Start/End: Complemental strand, 31282554 - 31282470
Alignment:
Q  103 tcattttggtccatttcagttaactttaaccccaaatatcctaggtggaccaaccttgtaggtggtccaccgtagaccttattaa 187  Q
    |||||||  ||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  31282554 tcattttaatccatttcagttaacttcaaccccaaatatcttaggtggaccaaccttgtaggtggtccaccgtagaccttattaa 31282470  T

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Target: chr3; HSP #5
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 31 - 114
Target Start/End: Original strand, 55423390 - 55423473
Alignment:
Q  31 taggcttaattatataaatggtccctcaacttatttgttgatttcgatatggtcccttaattctaaaaattttcattttggtcc 114  Q
    ||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||| ||||||||| ||||||||||||||    
T  55423390 taggcttaattatataaatggtcactcaacttatttgttgttttcgatatggtcccttatttctaaaaaatttcattttggtcc 55423473  T

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Target: chr3; HSP #6
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 31 - 114
Target Start/End: Original strand, 31280966 - 31281049
Alignment:
Q  31 taggcttaattatataaatggtccctcaacttatttgttgatttcgatatggtcccttaattctaaaaattttcattttggtcc 114  Q
    |||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||  ||| |||||||||||    
T  31280966 taggcttaattacataaatggtccctcaacttatttgttgttttcgatatggtcccttaattctaaacttttccattttggtcc 31281049  T

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Target: chr3; HSP #7
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 114 - 187
Target Start/End: Original strand, 55423504 - 55423577
Alignment:
Q  114 catttcagttaactttaaccccaaatatcctaggtggaccaaccttgtaggtggtccaccgtagaccttattaa 187  Q
    ||||||||||||||| |||||||||| || ||||||||||||||||||||||||||||||||||||||||||||    
T  55423504 catttcagttaacttcaaccccaaatgtcttaggtggaccaaccttgtaggtggtccaccgtagaccttattaa 55423577  T

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Target: chr3; HSP #8
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 33 - 114
Target Start/End: Complemental strand, 55425722 - 55425641
Alignment:
Q  33 ggcttaattatataaatggtccctcaacttatttgttgatttcgatatggtcccttaattctaaaaattttcattttggtcc 114  Q
    |||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||  ||| |||||||||||    
T  55425722 ggcttaattacataaatggtccctcaacttatttgttgttttcgatatggtcccttaattctaaacttttccattttggtcc 55425641  T

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Target: chr3; HSP #9
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 32 - 114
Target Start/End: Complemental strand, 46496945 - 46496863
Alignment:
Q  32 aggcttaattatataaatggtccctcaacttatttgttgatttcgatatggtcccttaattctaaaaattttcattttggtcc 114  Q
    ||||||||||| ||||||||||||||||||||||||||| ||||||| ||||||||||| | |||||| ||||| ||||||||    
T  46496945 aggcttaattacataaatggtccctcaacttatttgttgttttcgatttggtcccttaactttaaaaaatttcaatttggtcc 46496863  T

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Target: chr3; HSP #10
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 33 - 90
Target Start/End: Original strand, 46495493 - 46495550
Alignment:
Q  33 ggcttaattatataaatggtccctcaacttatttgttgatttcgatatggtcccttaa 90  Q
    |||||||||| |||||| |||||||||||||||||||| ||||||| |||||||||||    
T  46495493 ggcttaattacataaattgtccctcaacttatttgttgttttcgatttggtcccttaa 46495550  T

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Target: chr3; HSP #11
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 107 - 187
Target Start/End: Original strand, 46495598 - 46495678
Alignment:
Q  107 tttggtccatttcagttaactttaaccccaaatatcctaggtggaccaaccttgtaggtggtccaccgtagaccttattaa 187  Q
    |||| ||||| |||||||||||||| ||||||| |  |||||| |||||| |||||||||||||| | |||||||||||||    
T  46495598 tttgatccatgtcagttaactttaaacccaaatgtattaggtgaaccaacattgtaggtggtccatcatagaccttattaa 46495678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 33 - 104
Target Start/End: Original strand, 17029658 - 17029729
Alignment:
Q  33 ggcttaattatataaatggtccctcaacttatttgttgatttcgatatggtcccttaattctaaaaattttc 104  Q
    |||||||||| ||||||||||||  ||||||||||||  ||||||| ||||||||||||| |||||| ||||    
T  17029658 ggcttaattacataaatggtcccataacttatttgttcttttcgatttggtcccttaattttaaaaaatttc 17029729  T

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Target: chr3; HSP #13
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 229 - 299
Target Start/End: Original strand, 46495722 - 46495792
Alignment:
Q  229 acggctagatcatttaaatatatcgtatattacaatgaaccatcaacacgtaactttttctccttttcttc 299  Q
    ||||||||||||| ||  |||||||||| ||||| |||| ||||||||| ||| |||||||||||||||||    
T  46495722 acggctagatcatataggtatatcgtatgttacagtgaatcatcaacacataattttttctccttttcttc 46495792  T

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Target: chr3; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 33 - 114
Target Start/End: Original strand, 21515260 - 21515340
Alignment:
Q  33 ggcttaattatataaatggtccctcaacttatttgttgatttcgatatggtcccttaattctaaaaattttcattttggtcc 114  Q
    |||||||||| ||||||| ||||| ||||||||||||| ||||||| |||| |||||| |||||||| ||||  ||||||||    
T  21515260 ggcttaattacataaatgatcccttaacttatttgttgttttcgatttggt-ccttaactctaaaaaatttccgtttggtcc 21515340  T

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Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 30 - 114
Target Start/End: Complemental strand, 40896869 - 40896785
Alignment:
Q  30 ataggcttaattatataaatggtccctcaacttatttgttgatttcgatatggtcccttaattctaaaaattttcattttggtcc 114  Q
    ||||||||| | | ||| ||||||| | ||||||||||||| ||| ||| |||| ||||||||||||||| ||||  ||||||||    
T  40896869 ataggcttagtaacatagatggtcctttaacttatttgttgtttttgatttggttccttaattctaaaaaatttccatttggtcc 40896785  T

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Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 121 - 187
Target Start/End: Complemental strand, 21515609 - 21515543
Alignment:
Q  121 gttaactttaaccccaaatatcctaggtggaccaaccttgtaggtggtccaccgtagaccttattaa 187  Q
    |||||||||||| |||||| |  |||||||| |||  |||||||||||||||| || ||||||||||    
T  21515609 gttaactttaactccaaatgtattaggtggatcaatattgtaggtggtccaccatataccttattaa 21515543  T

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Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 35 - 97
Target Start/End: Original strand, 40892156 - 40892218
Alignment:
Q  35 cttaattatataaatggtccctcaacttatttgttgatttcgatatggtcccttaattctaaa 97  Q
    ||||||||||||||||||| || ||||||||| ||| |||| || || |||||||||| ||||    
T  40892156 cttaattatataaatggtctcttaacttatttcttgttttcaatttgatcccttaattttaaa 40892218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 97
Target Start/End: Original strand, 30155735 - 30155815
Alignment:
Q  19 gataatacaagataggctta--attatataaatggtccctcaacttatttgttgatttcgatatggtcccttaattctaaa 97  Q
    ||||||| || |||||||||  |||||||||||||||| | ||||||||||||| ||| ||| | ||| ||||||| ||||    
T  30155735 gataataaaatataggcttataattatataaatggtcctttaacttatttgttgtttttgatttagtctcttaattttaaa 30155815  T

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Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 127 - 183
Target Start/End: Original strand, 21128046 - 21128102
Alignment:
Q  127 tttaaccccaaatatcctaggtggaccaaccttgtaggtggtccaccgtagacctta 183  Q
    |||||||| |||| ||  |||||||||||| || ||||||||||||| |||||||||    
T  21128046 tttaaccctaaatgtctaaggtggaccaacattataggtggtccaccatagacctta 21128102  T

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Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 127 - 183
Target Start/End: Complemental strand, 43346442 - 43346386
Alignment:
Q  127 tttaaccccaaatatcctaggtggaccaaccttgtaggtggtccaccgtagacctta 183  Q
    |||||||| |||| ||  |||||||||||| || ||||||||||||| |||||||||    
T  43346442 tttaaccctaaatgtctaaggtggaccaacattataggtggtccaccatagacctta 43346386  T

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Target: chr4 (Bit Score: 82; Significance: 1e-38; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 219 - 316
Target Start/End: Complemental strand, 28657018 - 28656921
Alignment:
Q  219 caaaaaagaaacggctagatcatttaaatatatcgtatattacaatgaaccatcaacacgtaactttttctccttttcttccttccaccctcatttct 316  Q
    |||||||| |||||||||||||||||| ||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28657018 caaaaaaggaacggctagatcatttaagtatattgtatgttacaatgaaccatcaacacgtaactttttctccttttcttccttccaccctcatttct 28656921  T

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Target: chr4; HSP #2
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 32 - 114
Target Start/End: Complemental strand, 28657267 - 28657185
Alignment:
Q  32 aggcttaattatataaatggtccctcaacttatttgttgatttcgatatggtcccttaattctaaaaattttcattttggtcc 114  Q
    |||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||| ||| |||||||||||    
T  28657267 aggcttaattatataaatggtccctcaatttatttgttgttttcgatatggtcccttaattctaaaattttccattttggtcc 28657185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 103 - 187
Target Start/End: Complemental strand, 28657134 - 28657050
Alignment:
Q  103 tcattttggtccatttcagttaactttaaccccaaatatcctaggtggaccaaccttgtaggtggtccaccgtagaccttattaa 187  Q
    |||||||  |||||||||||||||||||||||||||| || ||||||||||||||||||||||| ||||||||||||||||||||    
T  28657134 tcattttaatccatttcagttaactttaaccccaaatgtcttaggtggaccaaccttgtaggtgatccaccgtagaccttattaa 28657050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 31 - 114
Target Start/End: Original strand, 28655567 - 28655650
Alignment:
Q  31 taggcttaattatataaatggtccctcaacttatttgttgatttcgatatggtcccttaattctaaaaattttcattttggtcc 114  Q
    |||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||| ||||  ||| |||||||||||    
T  28655567 taggcttaattacataaatggtccctcaacttatttgttgttttcgatatggtcccttaattataaacttttccattttggtcc 28655650  T

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Target: chr4; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 219 - 316
Target Start/End: Complemental strand, 11243649 - 11243550
Alignment:
Q  219 caaaaaagaaacggctagatcatttaaatatatcgtatattacaatgaaccatcaacacgtaactttttctccttttcttc--cttccaccctcatttct 316  Q
    |||||||| |||||||||||||||||  ||||| |||| ||| |||||| ||||||||| ||| |||||||| ||||||||  ||||||||||| |||||    
T  11243649 caaaaaaggaacggctagatcatttaggtatattgtatgttaaaatgaatcatcaacacataattttttctcattttcttcctcttccaccctcctttct 11243550  T

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Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 32 - 98
Target Start/End: Complemental strand, 11243872 - 11243806
Alignment:
Q  32 aggcttaattatataaatggtccctcaacttatttgttgatttcgatatggtcccttaattctaaaa 98  Q
    ||||| ||||| ||||||||||||||||||||||||||| ||| ||| ||||||||||| |||||||    
T  11243872 aggctaaattacataaatggtccctcaacttatttgttgttttagatttggtcccttaactctaaaa 11243806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 32 - 114
Target Start/End: Original strand, 20825434 - 20825515
Alignment:
Q  32 aggcttaattatataaatggtccctcaacttatttgttgatttcgatatggtcccttaattctaaaaattttcattttggtcc 114  Q
    |||||||||| |||||||||||| | ||||||||||||| ||||||| |||||| ||||||||||||| ||||  ||||||||    
T  20825434 aggcttaattgtataaatggtcctt-aacttatttgttgttttcgatttggtcctttaattctaaaaaatttctatttggtcc 20825515  T

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Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 107 - 168
Target Start/End: Complemental strand, 11243766 - 11243705
Alignment:
Q  107 tttggtccatttcagttaactttaaccccaaatatcctaggtggaccaaccttgtaggtggt 168  Q
    |||| ||||| | |||||||||||| ||||||| || |||||||||||||||||||||||||    
T  11243766 tttgatccatgttagttaactttaatcccaaatgtcttaggtggaccaaccttgtaggtggt 11243705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 118 - 187
Target Start/End: Complemental strand, 9791775 - 9791706
Alignment:
Q  118 tcagttaactttaaccccaaatatcctaggtggaccaaccttgtaggtggtccaccgtagaccttattaa 187  Q
    ||||||||| |||||||||||| |  ||||||||  ||  ||||||||||||||| ||||||||||||||    
T  9791775 tcagttaacattaaccccaaatgtattaggtggataaatattgtaggtggtccactgtagaccttattaa 9791706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 121 - 187
Target Start/End: Original strand, 2162727 - 2162793
Alignment:
Q  121 gttaactttaaccccaaatatcctaggtggaccaaccttgtaggtggtccaccgtagaccttattaa 187  Q
    ||||| |||||||| ||||||   |||| ||||||| || ||||||||||||| |||||||||||||    
T  2162727 gttaagtttaaccctaaatatgtaaggttgaccaacattttaggtggtccaccatagaccttattaa 2162793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 32 - 98
Target Start/End: Complemental strand, 20827644 - 20827578
Alignment:
Q  32 aggcttaattatataaatggtccctcaacttatttgttgatttcgatatggtcccttaattctaaaa 98  Q
    ||||||||||| ||||||||||  | ||||||||||||| ||| ||| ||| ||||||||| |||||    
T  20827644 aggcttaattacataaatggtcttttaacttatttgttgtttttgatttggacccttaattttaaaa 20827578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 145 - 183
Target Start/End: Original strand, 56000426 - 56000464
Alignment:
Q  145 aggtggaccaaccttgtaggtggtccaccgtagacctta 183  Q
    |||||||||||| || |||||||||||||||||||||||    
T  56000426 aggtggaccaacattataggtggtccaccgtagacctta 56000464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 146 - 183
Target Start/End: Original strand, 1188986 - 1189023
Alignment:
Q  146 ggtggaccaaccttgtaggtggtccaccgtagacctta 183  Q
    |||| |||||| ||||||||||||||||||||||||||    
T  1188986 ggtgaaccaacattgtaggtggtccaccgtagacctta 1189023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 119 - 187
Target Start/End: Complemental strand, 10168783 - 10168714
Alignment:
Q  119 cagttaactttaacccc-aaatatcctaggtggaccaaccttgtaggtggtccaccgtagaccttattaa 187  Q
    ||||||||||||||||| |||| ||   ||||||||||| || ||| |||||||||||| ||||||||||    
T  10168783 cagttaactttaacccccaaatgtctatggtggaccaacattatagatggtccaccgtacaccttattaa 10168714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 46; Significance: 3e-17; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 102 - 187
Target Start/End: Complemental strand, 7312300 - 7312215
Alignment:
Q  102 ttcattttggtccatttcagttaactttaaccccaaatatcctaggtggaccaaccttgtaggtggtccaccgtagaccttattaa 187  Q
    |||| |||| ||||| |||||||||||||||||||||| |  ||| ||||||||| ||||||||||| ||||||||| ||||||||    
T  7312300 ttcaatttgatccatgtcagttaactttaaccccaaatgtattagatggaccaacattgtaggtggttcaccgtagatcttattaa 7312215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 107 - 187
Target Start/End: Original strand, 24756986 - 24757066
Alignment:
Q  107 tttggtccatttcagttaactttaaccccaaatatcctaggtggaccaaccttgtaggtggtccaccgtagaccttattaa 187  Q
    |||| ||||| |||||||||||||||| ||||  |  ||| |||| |||| |||||||||||| ||| |||||||||||||    
T  24756986 tttgatccatgtcagttaactttaaccacaaaagtattagatggagcaacattgtaggtggtctaccttagaccttattaa 24757066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 49 - 114
Target Start/End: Complemental strand, 6889144 - 6889079
Alignment:
Q  49 tggtccctcaacttatttgttgatttcgatatggtcccttaattctaaaaattttcattttggtcc 114  Q
    |||||||| ||||||||| ||||||||| | ||||||||||| | | |||| |||| |||||||||    
T  6889144 tggtcccttaacttattttttgatttcgttttggtcccttaactattaaaagtttcgttttggtcc 6889079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 49 - 113
Target Start/End: Original strand, 5645562 - 5645626
Alignment:
Q  49 tggtccctcaacttatttgttgatttcgatatggtcccttaattctaaaaattttcattttggtc 113  Q
    |||||||| ||||||||| ||| ||||| | ||||||||||||| | |||| |||| ||||||||    
T  5645562 tggtcccttaacttattttttggtttcgttttggtcccttaattattaaaagtttcgttttggtc 5645626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 49 - 117
Target Start/End: Original strand, 8286387 - 8286455
Alignment:
Q  49 tggtccctcaacttatttgttgatttcgatatggtcccttaattctaaaaattttcattttggtccatt 117  Q
    |||||||| ||||||||| ||| ||||| | ||||||||||| | | |||| |||| ||||||||||||    
T  8286387 tggtcccttaacttattttttggtttcgttttggtcccttaactattaaaagtttcgttttggtccatt 8286455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 45; Significance: 1e-16; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 30 - 114
Target Start/End: Complemental strand, 2628385 - 2628301
Alignment:
Q  30 ataggcttaattatataaatggtccctcaacttatttgttgatttcgatatggtcccttaattctaaaaattttcattttggtcc 114  Q
    |||||||||||| |||||||||||| | ||||||||||||| |||| || ||||||||||| |||||||| ||||  ||||||||    
T  2628385 ataggcttaattttataaatggtcctttaacttatttgttgttttcaatttggtcccttaactctaaaaaatttccgtttggtcc 2628301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 35 - 90
Target Start/End: Original strand, 13875104 - 13875159
Alignment:
Q  35 cttaattatataaatggtccctcaacttatttgttgatttcgatatggtcccttaa 90  Q
    |||||||||||||||||||||||||||||||||||| ||||||| || ||||||||    
T  13875104 cttaattatataaatggtccctcaacttatttgttgttttcgatttgatcccttaa 13875159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 32 - 90
Target Start/End: Complemental strand, 43357003 - 43356945
Alignment:
Q  32 aggcttaattatataaatggtccctcaacttatttgttgatttcgatatggtcccttaa 90  Q
    |||||||||||||||||| |||||||||||||||||||| ||| ||| |||||||||||    
T  43357003 aggcttaattatataaatcgtccctcaacttatttgttgtttttgatttggtcccttaa 43356945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 35 - 98
Target Start/End: Original strand, 43356839 - 43356902
Alignment:
Q  35 cttaattatataaatggtccctcaacttatttgttgatttcgatatggtcccttaattctaaaa 98  Q
    |||||||| ||||||||||| ||||||||||||||| |||| || ||||||||||| |||||||    
T  43356839 cttaattacataaatggtccttcaacttatttgttgttttcaatttggtcccttaactctaaaa 43356902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 118 - 187
Target Start/End: Original strand, 21507180 - 21507249
Alignment:
Q  118 tcagttaactttaaccccaaatatcctaggtggaccaaccttgtaggtggtccaccgtagaccttattaa 187  Q
    ||||||||||||||  |||||| |  |||||||||||||  ||||||||||||| |||||||||||||||    
T  21507180 tcagttaactttaattccaaatgtattaggtggaccaacaatgtaggtggtccatcgtagaccttattaa 21507249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 229 - 299
Target Start/End: Complemental strand, 13876536 - 13876466
Alignment:
Q  229 acggctagatcatttaaatatatcgtatattacaatgaaccatcaacacgtaactttttctccttttcttc 299  Q
    ||||||| ||||| ||| |||||| ||| |||||||||| ||||| ||| ||| |||||||||||||||||    
T  13876536 acggctaaatcatataagtatatcatatgttacaatgaatcatcatcacataattttttctccttttcttc 13876466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 145 - 187
Target Start/End: Original strand, 11661712 - 11661754
Alignment:
Q  145 aggtggaccaaccttgtaggtggtccaccgtagaccttattaa 187  Q
    |||||||||||||||||||||||| ||||||| | ||||||||    
T  11661712 aggtggaccaaccttgtaggtggttcaccgtaaaacttattaa 11661754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 49 - 114
Target Start/End: Complemental strand, 10579717 - 10579652
Alignment:
Q  49 tggtccctcaacttatttgttgatttcgatatggtcccttaattctaaaaattttcattttggtcc 114  Q
    |||||||| ||||||||| ||| ||||||| ||||||||||| | | |||| |||| |||||||||    
T  10579717 tggtcccttaacttattttttggtttcgatttggtcccttaactattaaaagtttcgttttggtcc 10579652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 127 - 184
Target Start/End: Original strand, 51299404 - 51299461
Alignment:
Q  127 tttaaccccaaatatcctaggtggaccaaccttgtaggtggtccaccgtagaccttat 184  Q
    |||||||| ||||||   |||| ||||||| |||||||||||||||| ||||||||||    
T  51299404 tttaaccctaaatatttaaggtagaccaacattgtaggtggtccaccatagaccttat 51299461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 127 - 187
Target Start/End: Original strand, 8092719 - 8092779
Alignment:
Q  127 tttaaccccaaatatcctaggtggaccaaccttgtaggtggtccaccgtagaccttattaa 187  Q
    |||||||  |||||||  ||||| |||||| || ||||||||||||| |||||||||||||    
T  8092719 tttaaccttaaatatctaaggtgaaccaactttataggtggtccaccatagaccttattaa 8092779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0176 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: scaffold0176
Description:

Target: scaffold0176; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 33 - 90
Target Start/End: Original strand, 16038 - 16095
Alignment:
Q  33 ggcttaattatataaatggtccctcaacttatttgttgatttcgatatggtcccttaa 90  Q
    |||||||||||||||||||||||| ||||||||||||| ||||||| || ||||||||    
T  16038 ggcttaattatataaatggtcccttaacttatttgttgttttcgatttgatcccttaa 16095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 27 - 98
Target Start/End: Complemental strand, 2717905 - 2717834
Alignment:
Q  27 aagataggcttaattatataaatggtccctcaacttatttgttgatttcgatatggtcccttaattctaaaa 98  Q
    |||| ||||||||||| ||||||| ||||| ||||||||||||| |||| || ||||||||||| |||||||    
T  2717905 aagaaaggcttaattacataaatgatcccttaacttatttgttgttttcaatttggtcccttaactctaaaa 2717834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 31 - 114
Target Start/End: Complemental strand, 28545074 - 28544991
Alignment:
Q  31 taggcttaattatataaatggtccctcaacttatttgttgatttcgatatggtcccttaattctaaaaattttcattttggtcc 114  Q
    |||||||||||| |||||| |||||| || |||||||||| ||||||| |||||||| || ||||||  ||||| || ||||||    
T  28545074 taggcttaattacataaattgtcccttaatttatttgttgttttcgatttggtccctcaactctaaattttttctttctggtcc 28544991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 120 - 187
Target Start/End: Complemental strand, 2277468 - 2277401
Alignment:
Q  120 agttaactttaaccccaaatatcctaggtggaccaaccttgtaggtggtccaccgtagaccttattaa 187  Q
    |||||||||||||||||||| ||   ||||||||||| | |||| | ||||||| |||||||||||||    
T  2277468 agttaactttaaccccaaatgtctatggtggaccaacatggtagatagtccaccatagaccttattaa 2277401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 121 - 187
Target Start/End: Complemental strand, 18971294 - 18971228
Alignment:
Q  121 gttaactttaaccccaaatatcctaggtggaccaaccttgtaggtggtccaccgtagaccttattaa 187  Q
    ||||| |||||||| ||||||   |||||||||||| |||||| ||||| || ||||||||||||||    
T  18971294 gttaattttaacccaaaatatataaggtggaccaacattgtagatggtctactgtagaccttattaa 18971228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 121 - 187
Target Start/End: Original strand, 34147254 - 34147320
Alignment:
Q  121 gttaactttaaccccaaatatcctaggtggaccaaccttgtaggtggtccaccgtagaccttattaa 187  Q
    ||||||||||||||||||| ||   ||||||||||| | |||| | ||||||| |||||||||||||    
T  34147254 gttaactttaaccccaaatgtctatggtggaccaacatggtagatagtccaccatagaccttattaa 34147320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.000000000008; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 107 - 187
Target Start/End: Original strand, 7354608 - 7354688
Alignment:
Q  107 tttggtccatttcagttaactttaaccccaaatatcctaggtggaccaaccttgtaggtggtccaccgtagaccttattaa 187  Q
    ||||||||| |||| |||||||||||| ||||| ||  || ||||||||| || || |||||||| |||||||||||||||    
T  7354608 tttggtccacttcaattaactttaaccacaaatgtctaagatggaccaacattataagtggtccatcgtagaccttattaa 7354688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 49 - 114
Target Start/End: Original strand, 39383821 - 39383886
Alignment:
Q  49 tggtccctcaacttatttgttgatttcgatatggtcccttaattctaaaaattttcattttggtcc 114  Q
    |||||||| ||||||||| ||| ||||| | ||||||||||||| | |||| |||| |||||||||    
T  39383821 tggtcccttaacttattttttggtttcgttttggtcccttaattattaaaagtttcgttttggtcc 39383886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 258 - 299
Target Start/End: Complemental strand, 43460683 - 43460642
Alignment:
Q  258 ttacaatgaaccatcaacacgtaactttttctccttttcttc 299  Q
    ||||| |||||||||||||| ||||||||| |||||||||||    
T  43460683 ttacattgaaccatcaacacttaactttttttccttttcttc 43460642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 34 - 114
Target Start/End: Original strand, 29861496 - 29861576
Alignment:
Q  34 gcttaattatataaatggtccctcaacttatttgttgatttcgatatggtcccttaattctaaaaattttcattttggtcc 114  Q
    ||||||||| |||| |||||||  ||||||||||||| ||||||| || |||||||  | ||||||  |||| ||||||||    
T  29861496 gcttaattacataactggtcccctaacttatttgttgttttcgatttgatcccttatctttaaaaaaattcaatttggtcc 29861576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 232 - 299
Target Start/End: Complemental strand, 3138747 - 3138680
Alignment:
Q  232 gctagatcatttaaatatatcgtatattacaatgaaccatcaacacgtaactttttctccttttcttc 299  Q
    |||||||||| ||  |||||||||| ||||| |||||||||||||| ||| ||||| |||||||||||    
T  3138747 gctagatcatataggtatatcgtatgttacagtgaaccatcaacacataattttttttccttttcttc 3138680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 229 - 299
Target Start/End: Original strand, 42836084 - 42836154
Alignment:
Q  229 acggctagatcatttaaatatatcgtatattacaatgaaccatcaacacgtaactttttctccttttcttc 299  Q
    ||||||||||||| ||  |||||||||| ||||| |||||||||||||| |||  |||| |||||||||||    
T  42836084 acggctagatcatataggtatatcgtatgttacagtgaaccatcaacacataatattttatccttttcttc 42836154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 118 - 187
Target Start/End: Complemental strand, 3138862 - 3138793
Alignment:
Q  118 tcagttaactttaaccccaaatatcctaggtggaccaaccttgtaggtggtccaccgtagaccttattaa 187  Q
    ||||||||||||||||||||||||  ||||| |||||||    | ||||||||||||| |||||||||||    
T  3138862 tcagttaactttaaccccaaatatattaggtagaccaacaccattggtggtccaccgtcgaccttattaa 3138793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 121 - 187
Target Start/End: Complemental strand, 42100105 - 42100039
Alignment:
Q  121 gttaactttaaccccaaatatcctaggtggaccaaccttgtaggtggtccaccgtagaccttattaa 187  Q
    ||||||||||||  ||||| || | ||||||||||||||  | |||||||| |||||||||||||||    
T  42100105 gttaactttaacttcaaatgtctttggtggaccaaccttaaaagtggtccatcgtagaccttattaa 42100039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 121 - 187
Target Start/End: Original strand, 45395085 - 45395151
Alignment:
Q  121 gttaactttaaccccaaatatcctaggtggaccaaccttgtaggtggtccaccgtagaccttattaa 187  Q
    |||||||||||| |||||||||   ||||||||||  |||||||||||||| | |||||| ||||||    
T  45395085 gttaactttaactccaaatatctatggtggaccaatattgtaggtggtccatcatagaccgtattaa 45395151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 49 - 114
Target Start/End: Complemental strand, 21524699 - 21524634
Alignment:
Q  49 tggtccctcaacttatttgttgatttcgatatggtcccttaattctaaaaattttcattttggtcc 114  Q
    |||||||| ||||||||| ||| ||||| | ||||||||||| | | |||| ||||||||||||||    
T  21524699 tggtcccttaacttattttttggtttcgttttggtcccttaactattaaaagtttcattttggtcc 21524634  T

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Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 120 - 156
Target Start/End: Original strand, 42835976 - 42836012
Alignment:
Q  120 agttaactttaaccccaaatatcctaggtggaccaac 156  Q
    ||||||||||||||||||||||  |||||||||||||    
T  42835976 agttaactttaaccccaaatatattaggtggaccaac 42836012  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 127 - 183
Target Start/End: Complemental strand, 12830933 - 12830877
Alignment:
Q  127 tttaaccccaaatatcctaggtggaccaaccttgtaggtggtccaccgtagacctta 183  Q
    |||||||| ||||||| |||||| |||||| || ||||||||||||| |||||||||    
T  12830933 tttaaccctaaatatcttaggtgaaccaacattataggtggtccaccatagacctta 12830877  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 127 - 183
Target Start/End: Complemental strand, 12862913 - 12862857
Alignment:
Q  127 tttaaccccaaatatcctaggtggaccaaccttgtaggtggtccaccgtagacctta 183  Q
    |||||||| ||||||| |||||| |||||| || ||||||||||||| |||||||||    
T  12862913 tttaaccctaaatatcttaggtgaaccaacattataggtggtccaccatagacctta 12862857  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 121 - 187
Target Start/End: Original strand, 32757943 - 32758009
Alignment:
Q  121 gttaactttaaccccaaatatcctaggtggaccaaccttgtaggtggtccaccgtagaccttattaa 187  Q
    ||||||||||||||||||| ||   ||||||||||| | |||| | ||||||| |||||||||||||    
T  32757943 gttaactttaaccccaaatgtctatggtggaccaacatggtagatagtccaccatagaccttattaa 32758009  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 49 - 114
Target Start/End: Original strand, 1155980 - 1156045
Alignment:
Q  49 tggtccctcaacttatttgttgatttcgatatggtcccttaattctaaaaattttcattttggtcc 114  Q
    |||||||| ||||||||| ||| ||||| | ||||||||||| | | |||| ||||||||||||||    
T  1155980 tggtcccttaacttattttttggtttcgttttggtcccttaactattaaaagtttcattttggtcc 1156045  T

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Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 49 - 114
Target Start/End: Complemental strand, 14858617 - 14858552
Alignment:
Q  49 tggtccctcaacttatttgttgatttcgatatggtcccttaattctaaaaattttcattttggtcc 114  Q
    |||||||| ||||||||| ||||||||| | ||||||||||||| | |||| |||  |||||||||    
T  14858617 tggtcccttaacttattttttgatttcgttttggtcccttaattattaaaagttttgttttggtcc 14858552  T

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Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 49 - 114
Target Start/End: Original strand, 36442236 - 36442301
Alignment:
Q  49 tggtccctcaacttatttgttgatttcgatatggtcccttaattctaaaaattttcattttggtcc 114  Q
    |||||||| ||||||||| ||| ||||| | ||||||||||| | | |||| ||||||||||||||    
T  36442236 tggtcccttaacttattttttgctttcgttttggtcccttaactattaaaagtttcattttggtcc 36442301  T

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Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 49 - 114
Target Start/End: Complemental strand, 42382215 - 42382150
Alignment:
Q  49 tggtccctcaacttatttgttgatttcgatatggtcccttaattctaaaaattttcattttggtcc 114  Q
    |||||||| ||||||||| ||| ||||||| ||||||||||| | | |||| |||| |||||||||    
T  42382215 tggtcccttaacttattttttggtttcgatttggtcccttaactattaaaagtttcgttttggtcc 42382150  T

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Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 127 - 183
Target Start/End: Original strand, 15856654 - 15856710
Alignment:
Q  127 tttaaccccaaatatcctaggtggaccaaccttgtaggtggtccaccgtagacctta 183  Q
    |||||||| |||| ||  |||||||||||| || ||||||||||||| |||||||||    
T  15856654 tttaaccctaaatgtctaaggtggaccaacattataggtggtccaccatagacctta 15856710  T

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Target: scaffold0128 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0128
Description:

Target: scaffold0128; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 146 - 187
Target Start/End: Original strand, 22123 - 22164
Alignment:
Q  146 ggtggaccaaccttgtaggtggtccaccgtagaccttattaa 187  Q
    ||||||||||| |||||||||||||||| |||||| ||||||    
T  22123 ggtggaccaacattgtaggtggtccaccatagaccctattaa 22164  T

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