View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17888_high_2 (Length: 481)
Name: NF17888_high_2
Description: NF17888
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17888_high_2 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 448; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 448; E-Value: 0
Query Start/End: Original strand, 12 - 463
Target Start/End: Original strand, 5400882 - 5401333
Alignment:
| Q |
12 |
atgaacctagcattgattctagtaagatagtgcattttttaacaaaaaccaaaaagttactatatatagtggggttctagttgttttctttaagctgggg |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5400882 |
atgaacctagcattgattctagtaagatagtgcattttttaacaaaaaccaaaaagttactatatatagtggggttctagttgttttctttaagctgggg |
5400981 |
T |
|
| Q |
112 |
aatctgggttttgagttatcctaatcgaggagaagttaagcttttttcaccgtaaaagatgtttgtgatcgtgtgtgcataactgtacaagtagtgtcct |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5400982 |
aatctgggttttgagttatcctaatcgaggagaagttaagcttttttcaccgtaaaagatgtttgtgatcgtgtgtgcataactgtacaagtagtgtcct |
5401081 |
T |
|
| Q |
212 |
tattcaattctaagaacagcttaagaaaccagctcctcgtgtcaaatttggttccacaaaggacatgaggttgttgagtactaacacctgcattccaaaa |
311 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
5401082 |
tattcaattctaagaacagcttaagaaaccagctcctcgtgtcaaatttggttccacaaaggacatgaggttgttgagtactaacacctgcatgccaaaa |
5401181 |
T |
|
| Q |
312 |
ttattaggacctactgctagttatagttagagagtactagtagtgtcttctattgttagtgtgatattttccctaggttcagttgattcataaaaagcat |
411 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5401182 |
ttattaggacctactgctagttatagttagagagtactagtagtgtcttctattgttagtgtgatattttccctaggttcagttgattcataaaaagcat |
5401281 |
T |
|
| Q |
412 |
gtttggtaggacatgtaccacttttaattggaatctaagttgcagtacaatg |
463 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5401282 |
gtttggtaggacatgtaccacttttaattggaatctaagttgcagtacaatg |
5401333 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University