View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17888_low_1 (Length: 589)
Name: NF17888_low_1
Description: NF17888
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17888_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 111; Significance: 1e-55; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 17 - 147
Target Start/End: Original strand, 53950596 - 53950726
Alignment:
| Q |
17 |
ttctcgagcgtgtttgaagctttacattgtgcttagaaattaggggtttcaattagtggaacttaaggttgttttgtaagtagtgtgataccatgctaag |
116 |
Q |
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| T |
53950596 |
ttctcgagtgtgtttgaagctttacattgtgcttagaaattgggggtttcaattagtggaacttgaggttgatttgtaagtagtgtgataccatgctaag |
53950695 |
T |
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| Q |
117 |
caaaaaataaggattaaaagtggtgatgaaa |
147 |
Q |
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| T |
53950696 |
caaaaaataaggattaaaagcggtgatgaaa |
53950726 |
T |
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Target: chr3; HSP #2
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 200 - 329
Target Start/End: Original strand, 53950779 - 53950908
Alignment:
| Q |
200 |
gttgatatttttatatgaccaaaatatatatttaacaaagnnnnnnnggataattcattccaactcatgatgtggtcatcggtaatgttataaagagatt |
299 |
Q |
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| T |
53950779 |
gttgatatttttataagaacaaaatatatatttaacaaagaaaaaaaggataattcattccaactcatgacgtggtcatccgtaatgtcataaagagatt |
53950878 |
T |
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| Q |
300 |
ttctgttttctcaaattgccaaatttagtc |
329 |
Q |
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| T |
53950879 |
ttatgtttttccgaattgtcaaatttagtc |
53950908 |
T |
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