View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17888_low_12 (Length: 351)
Name: NF17888_low_12
Description: NF17888
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17888_low_12 |
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Alignment Details
Target: chr8 (Bit Score: 305; Significance: 1e-171; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 12 - 344
Target Start/End: Original strand, 38299510 - 38299842
Alignment:
| Q |
12 |
aagaatatatggaatccgattgcgcggtagatttactggactctgataacgagacaatggagcaaaagatatcacggttagtaaaaacttgtgcatccat |
111 |
Q |
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| T |
38299510 |
aagaaaatatggaatccgattgcgaggtagatttactggactctgatgacgagacaatggagcaaaaggaatcacggttagtaaaaacttgtgcatccat |
38299609 |
T |
|
| Q |
112 |
gatcctttcatctgattattcctttcgtcattgcgagtacgactcaatgaagaacatcatggagtggttatgtcaagatattgttttgcctcctcctgac |
211 |
Q |
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| T |
38299610 |
gatcctttcatctgattattcctttcgtcattgcgagtacgactcaatgaagaacatcatggaatggttaagtcaagatattgttttgcctcctcctgac |
38299709 |
T |
|
| Q |
212 |
gttgtcgagctttattttgaggatttgtacactgaagagaaactcaatattaaacaacagctggctactattcctaataggatatctttaacttttgatc |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38299710 |
gttgtcgagctttattttgaggatttgtacactgaagagaaactcaatattaaacaacagctggctactattcctaataggatatctttaacttttgatc |
38299809 |
T |
|
| Q |
312 |
tgtgggaatctaacactgctgagacttatatct |
344 |
Q |
| |
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| T |
38299810 |
tgtgggaatctaacactgctgagacttatatct |
38299842 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 246 - 344
Target Start/End: Original strand, 38305663 - 38305761
Alignment:
| Q |
246 |
aagagaaactcaatattaaacaacagctggctactattcctaataggatatctttaacttttgatctgtgggaatctaacactgctgagacttatatct |
344 |
Q |
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| T |
38305663 |
aagagaaactgaagcttaaacaagaattggctaccattcctaataggatatctttaacttttgatttgtgggaatctaacactgctgagacttatatct |
38305761 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 234 - 342
Target Start/End: Original strand, 38316379 - 38316487
Alignment:
| Q |
234 |
atttgtacactgaagagaaactcaatattaaacaacagctggctactattcctaataggatatctttaacttttgatctgtgggaatctaacactgctga |
333 |
Q |
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|||||||||| |||||||||| || |||||||| | |||||| |||||||||||||||||||||||||||||| |||||||||||||||| |||| |
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| T |
38316379 |
atttgtacacgaaagagaaactaaagcttaaacaagaattggctagcattcctaataggatatctttaacttttgatttgtgggaatctaacaccactga |
38316478 |
T |
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| Q |
334 |
gacttatat |
342 |
Q |
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||||||||| |
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| T |
38316479 |
gacttatat |
38316487 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 232 - 342
Target Start/End: Original strand, 38320475 - 38320585
Alignment:
| Q |
232 |
ggatttgtacactgaagagaaactcaatattaaacaacagctggctactattcctaataggatatctttaacttttgatctgtgggaatctaacactgct |
331 |
Q |
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|
|||||||||||| ||| ||||||||| ||||||| | ||||||| |||||||||||||||||||||||| |||||||||||||||| |||| | |
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| T |
38320475 |
ggatttgtacacgaaagcgaaactcaagcttaaacaggatttggctaccattcctaataggatatctttaactgttgatctgtgggaatcatgcactacc |
38320574 |
T |
|
| Q |
332 |
gagacttatat |
342 |
Q |
| |
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||||||||||| |
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| T |
38320575 |
gagacttatat |
38320585 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 287 - 342
Target Start/End: Original strand, 38313023 - 38313078
Alignment:
| Q |
287 |
aataggatatctttaacttttgatctgtgggaatctaacactgctgagacttatat |
342 |
Q |
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|||||||||||||||||||||||| ||||||||||||| ||| ||||||||||||| |
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| T |
38313023 |
aataggatatctttaacttttgatttgtgggaatctaatactactgagacttatat |
38313078 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 261 - 322
Target Start/End: Original strand, 38325251 - 38325312
Alignment:
| Q |
261 |
ttaaacaacagctggctactattcctaataggatatctttaacttttgatctgtgggaatct |
322 |
Q |
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|||||||||| ||||||| |||||||||||| ||||||||||||||||| ||||||||||| |
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|
| T |
38325251 |
ttaaacaacaattggctaccattcctaatagggtatctttaacttttgatttgtgggaatct |
38325312 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 235 - 322
Target Start/End: Original strand, 38308385 - 38308472
Alignment:
| Q |
235 |
tttgtacactgaagagaaactcaatattaaacaacagctggctactattcctaataggatatctttaacttttgatctgtgggaatct |
322 |
Q |
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||||||||| |||||||||| || | |||||||| |||||||| |||||| ||| |||||||||||| ||||| ||||||||||| |
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| T |
38308385 |
tttgtacacggaagagaaacataagctcaaacaacaactggctaccattccttataagatatctttaacctttgagttgtgggaatct |
38308472 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 234 - 342
Target Start/End: Complemental strand, 38850966 - 38850858
Alignment:
| Q |
234 |
atttgtacactgaagagaaactcaatattaaacaacagctggctactattcctaataggatatctttaacttttgatctgtgggaatctaacactgctga |
333 |
Q |
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|||||||||| ||||||||| || |||||||||| | |||| ||||||||||||||||||||| |||||||| ||||||||||||||||| |||| |
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| T |
38850966 |
atttgtacacgaaagagaaacctaagcttaaacaacaattaactaccattcctaataggatatctttatcttttgatttgtgggaatctaacactactga |
38850867 |
T |
|
| Q |
334 |
gacttatat |
342 |
Q |
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||||||||| |
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| T |
38850866 |
gacttatat |
38850858 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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