View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17888_low_13 (Length: 346)
Name: NF17888_low_13
Description: NF17888
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17888_low_13 |
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Alignment Details
Target: chr5 (Bit Score: 114; Significance: 9e-58; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 114; E-Value: 9e-58
Query Start/End: Original strand, 1 - 122
Target Start/End: Complemental strand, 31405717 - 31405596
Alignment:
| Q |
1 |
tcaagtccgaaaattgtaaggacccagctttacgccatattttcatgctaaacaataggtcacacatagaagctatgaataaattctcaagattggaaac |
100 |
Q |
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| T |
31405717 |
tcaagtccgaaaattgtaaggaccgagctttacgccatattttcatgctaaataataggtcacacatagaagctatgaataaattctcaagattggaaac |
31405618 |
T |
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| Q |
101 |
catttttggtaatgattggttc |
122 |
Q |
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| T |
31405617 |
catttttggtaatgattggttc |
31405596 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 153 - 312
Target Start/End: Complemental strand, 31405565 - 31405406
Alignment:
| Q |
153 |
cttgatctttataaaagaatctcatggaataaggtgatggactttctgaagctggacaacaaagacaacattacagaagagttactgaaagagaatattt |
252 |
Q |
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| T |
31405565 |
cttgatctttataaaagaagcgcatgggatgaggtgatggactttctcaagctggacaacaatgaaagcattacaaaagagttattgaaagagaagattc |
31405466 |
T |
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| Q |
253 |
atttgttcaacagtcactttgaagcgatatgcagagtccagtctgagtggtttatatatg |
312 |
Q |
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| T |
31405465 |
atttgttcaacaatcgctttgaagcaatatgcagagttcagtctgcgtggtttatttatg |
31405406 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 167 - 214
Target Start/End: Complemental strand, 31287333 - 31287286
Alignment:
| Q |
167 |
aagaatctcatggaataaggtgatggactttctgaagctggacaacaa |
214 |
Q |
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||||| |||||||||||||||| |||||||| |||| ||||||||||| |
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| T |
31287333 |
aagaagctcatggaataaggtgttggactttttgaaactggacaacaa |
31287286 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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