View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17888_low_14 (Length: 342)

Name: NF17888_low_14
Description: NF17888
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17888_low_14
NF17888_low_14
[»] chr6 (6 HSPs)
chr6 (157-339)||(32876447-32876630)
chr6 (148-299)||(32881116-32881267)
chr6 (16-114)||(32877257-32877355)
chr6 (20-114)||(32880415-32880509)
chr6 (112-165)||(32876651-32876704)
chr6 (262-299)||(12501489-12501526)
[»] chr4 (1 HSPs)
chr4 (247-299)||(925081-925133)
[»] chr2 (1 HSPs)
chr2 (245-297)||(44085272-44085324)
[»] chr8 (2 HSPs)
chr8 (262-295)||(6806923-6806956)
chr8 (245-297)||(31666011-31666063)
[»] chr5 (2 HSPs)
chr5 (262-299)||(27440494-27440531)
chr5 (262-299)||(38690985-38691022)
[»] chr3 (1 HSPs)
chr3 (262-299)||(40419661-40419698)
[»] scaffold0027 (1 HSPs)
scaffold0027 (247-332)||(5081-5168)
[»] chr7 (1 HSPs)
chr7 (245-285)||(32919013-32919053)
[»] chr1 (1 HSPs)
chr1 (245-285)||(11812385-11812425)


Alignment Details
Target: chr6 (Bit Score: 160; Significance: 3e-85; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 157 - 339
Target Start/End: Complemental strand, 32876630 - 32876447
Alignment:
Q  157 ctaagccacgaggaggagaaatcatact-cttaaaagtaaatcaatgtttttgaaaattagttgtttcaatgaaagcttaaaaattcaaaagataaatga 255  Q
    ||||||||||||||||||||||| |||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32876630 ctaagccacgaggaggagaaatcgtactacttaaacgtaaatcaatgtttttgaaaattagttgtttcaatgaaagcttaaaaattcaaaagataaatga 32876531  T
Q  256 tagctatacaatcattttgtgacaatttttaaacaattttctctgggtcacattatgttcttattatctttcttcttctctctc 339  Q
    ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  32876530 tagttatacaatcattttgtgacaatttttaaacaattttctctgggtcacattatgttcttattatctttctttttctctctc 32876447  T

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Target: chr6; HSP #2
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 148 - 299
Target Start/End: Original strand, 32881116 - 32881267
Alignment:
Q  148 ccaactgatctaagccacgaggaggagaaatcatactcttaaaagtaaatcaatgtttttgaaaattagttgtttcaatgaaagcttaaaaattcaaaag 247  Q
    |||||| |||||||||||| |||||||||||| ||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32881116 ccaacttatctaagccacggggaggagaaatcgtactcctaaacgtaaatcaatgtttttgaaaattagttgtttcaatgaaagcttaaaaattcaaaag 32881215  T
Q  248 ataaatgatagctatacaatcattttgtgacaatttttaaacaattttctct 299  Q
    | ||||||||| |||| || |||||||||| || ||||||||||||||||||    
T  32881216 agaaatgatagttatataaccattttgtgataacttttaaacaattttctct 32881267  T

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Target: chr6; HSP #3
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 16 - 114
Target Start/End: Complemental strand, 32877355 - 32877257
Alignment:
Q  16 ctaatgacatgttattgtatgatgcattcttcatggaagttttaacgtcatgagcaaggtctggatttattccctctatgactacattatgtttgctca 114  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  32877355 ctaatgacatgttattgtatgatgcattcttcatggaagttttaacgtcaggagcaaggtctggatttattccctctatgactacattatgtttgctca 32877257  T

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Target: chr6; HSP #4
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 20 - 114
Target Start/End: Original strand, 32880415 - 32880509
Alignment:
Q  20 tgacatgttattgtatgatgcattcttcatggaagttttaacgtcatgagcaaggtctggatttattccctctatgactacattatgtttgctca 114  Q
    |||||||||||||| |||||||||||||||||||||||||| |||||||||||||||| |||||||||||| |||||||||||||||||||||||    
T  32880415 tgacatgttattgtctgatgcattcttcatggaagttttaatgtcatgagcaaggtcttgatttattccctatatgactacattatgtttgctca 32880509  T

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Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 112 - 165
Target Start/End: Complemental strand, 32876704 - 32876651
Alignment:
Q  112 tcaatgttagttttcttattatacataacataatatccaactgatctaagccac 165  Q
    |||| ||||||||||||||||||| |||| ||||||||||||||||||||||||    
T  32876704 tcaaagttagttttcttattatacctaacgtaatatccaactgatctaagccac 32876651  T

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Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 262 - 299
Target Start/End: Original strand, 12501489 - 12501526
Alignment:
Q  262 tacaatcattttgtgacaatttttaaacaattttctct 299  Q
    |||||| ||||||||||||||||||||||| |||||||    
T  12501489 tacaattattttgtgacaatttttaaacaactttctct 12501526  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 247 - 299
Target Start/End: Complemental strand, 925133 - 925081
Alignment:
Q  247 gataaatgatagctatacaatcattttgtgacaatttttaaacaattttctct 299  Q
    |||||||||||  ||||||| ||||||||||||| ||||| ||||||||||||    
T  925133 gataaatgatatttatacaaccattttgtgacaacttttagacaattttctct 925081  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 245 - 297
Target Start/End: Original strand, 44085272 - 44085324
Alignment:
Q  245 aagataaatgatagctatacaatcattttgtgacaatttttaaacaattttct 297  Q
    |||||||||||||  |||||||| |||||||||||||||||  ||||||||||    
T  44085272 aagataaatgatatttatacaattattttgtgacaatttttggacaattttct 44085324  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 262 - 295
Target Start/End: Original strand, 6806923 - 6806956
Alignment:
Q  262 tacaatcattttgtgacaatttttaaacaatttt 295  Q
    ||||||||||||||||||| ||||||||||||||    
T  6806923 tacaatcattttgtgacaacttttaaacaatttt 6806956  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 245 - 297
Target Start/End: Complemental strand, 31666063 - 31666011
Alignment:
Q  245 aagataaatgatagctatacaatcattttgtgacaatttttaaacaattttct 297  Q
    |||||||||||||  | ||||| ||||||||||||||||||| |||| |||||    
T  31666063 aagataaatgatatatgtacaaccattttgtgacaatttttagacaactttct 31666011  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 262 - 299
Target Start/End: Original strand, 27440494 - 27440531
Alignment:
Q  262 tacaatcattttgtgacaatttttaaacaattttctct 299  Q
    ||||||||||||||||||| |||| |||||||||||||    
T  27440494 tacaatcattttgtgacaacttttgaacaattttctct 27440531  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 262 - 299
Target Start/End: Complemental strand, 38691022 - 38690985
Alignment:
Q  262 tacaatcattttgtgacaatttttaaacaattttctct 299  Q
    |||||| ||||||||||||||||||||||| |||||||    
T  38691022 tacaattattttgtgacaatttttaaacaactttctct 38690985  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 262 - 299
Target Start/End: Complemental strand, 40419698 - 40419661
Alignment:
Q  262 tacaatcattttgtgacaatttttaaacaattttctct 299  Q
    |||||||||||||||| |||||||| ||||||||||||    
T  40419698 tacaatcattttgtgataatttttagacaattttctct 40419661  T

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Target: scaffold0027 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 247 - 332
Target Start/End: Original strand, 5081 - 5168
Alignment:
Q  247 gataaatgatagctatacaatcattttgtgacaatttttaaacaattttctct--gggtcacattatgttcttattatctttcttctt 332  Q
    ||||||| |||  |||||||||||||| | |||||||||| |||| |||||||   | |||||||||||| |||| |||| |||||||    
T  5081 gataaattatatttatacaatcattttataacaatttttagacaactttctctcatgttcacattatgtttttatcatctctcttctt 5168  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 245 - 285
Target Start/End: Complemental strand, 32919053 - 32919013
Alignment:
Q  245 aagataaatgatagctatacaatcattttgtgacaattttt 285  Q
    |||| ||||||||  ||||||||||||||||||||||||||    
T  32919053 aagagaaatgatatttatacaatcattttgtgacaattttt 32919013  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 245 - 285
Target Start/End: Original strand, 11812385 - 11812425
Alignment:
Q  245 aagataaatgatagctatacaatcattttgtgacaattttt 285  Q
    |||| ||||||||| | ||||||||||||||||||||||||    
T  11812385 aagagaaatgatagttgtacaatcattttgtgacaattttt 11812425  T

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