View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17888_low_17 (Length: 278)
Name: NF17888_low_17
Description: NF17888
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17888_low_17 |
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Alignment Details
Target: chr2 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 13 - 260
Target Start/End: Complemental strand, 28529698 - 28529451
Alignment:
| Q |
13 |
atactacataatttatccacaaaaaatagttcacatattcaccaacagaaatgtgagcatatttgtttattacctaagctatagtgctctctaaagaaca |
112 |
Q |
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| T |
28529698 |
atactacataatttatccacaaaaaatagttcacatattcaccaacagaaatgtgagcatatttgtttattacctaagctatagtgctctctaaagaaca |
28529599 |
T |
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| Q |
113 |
aaagttaaaaaattacttttgtttatccatgacactttatataacatttgataaaaggggtatctggttcaatataatttttataaaaagcatatattat |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
28529598 |
aaagttaaaaaattacttttgtttatccatgacactttctataacatttgataaaaggggtatctggttcaaaataatttttataaaaagcatatattat |
28529499 |
T |
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| Q |
213 |
atacatttgcacaatcttttgttatcttccaggattcctggtctccca |
260 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28529498 |
atacatttgcacaatcttttgttatcttccaggattcctggtctccca |
28529451 |
T |
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