View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17888_low_19 (Length: 258)
Name: NF17888_low_19
Description: NF17888
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17888_low_19 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 216; Significance: 1e-119; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 10 - 258
Target Start/End: Complemental strand, 38216352 - 38216107
Alignment:
| Q |
10 |
aagaatatgtattgttattcacaaaacagacaaaccaaacccactttcacaattgcacttaatctcatccttatccacaacccttcccaatgtcctttcc |
109 |
Q |
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| T |
38216352 |
aagaaaatgtattgttattcacaaaacagacaaaccaaacccactttcacaattgcacttaatctcatccttatccacaacccttcccaatgtcctttcc |
38216253 |
T |
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| Q |
110 |
tatataaataa-ttattcaatcacttttgctttttcatcaagcctaaaaaacaatatataccaacttcttcaattacacacaaaatacaatacaacaaaa |
208 |
Q |
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| T |
38216252 |
--tataaataatttattcaatcacttttgctttttcatcaagcctaaaaaacaatatataccaacttcttcaatt--acacaaaatacaatacaacaaaa |
38216157 |
T |
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| Q |
209 |
tctcattaactttatactatagtaagagaaatatcaatatgtctgacatt |
258 |
Q |
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| T |
38216156 |
tctcattaactttatactatagtaagagaaatatcaatatgtctgacatt |
38216107 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 93; Significance: 2e-45; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 10 - 161
Target Start/End: Complemental strand, 23608739 - 23608590
Alignment:
| Q |
10 |
aagaatatgtattgttattcacaaaacagacaaaccaaacccactttcacaattgcacttaatctcatccttatccacaacccttcccaatgtcctttcc |
109 |
Q |
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||||| |||||||||||||||||||| ||||||||||||||||||| |||||||| | | ||||||||||||||||| |||||||||||||||||||||| |
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| T |
23608739 |
aagaaaatgtattgttattcacaaaatagacaaaccaaacccacttacacaattggattcaatctcatccttatccaaaacccttcccaatgtcctttcc |
23608640 |
T |
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| Q |
110 |
tatataaataattattcaatcacttttgctttttcatcaagcctaaaaaaca |
161 |
Q |
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| T |
23608639 |
--aataaatgaatattcaatcactattgctttttcatcaagccaaaaaaaca |
23608590 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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