View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17888_low_2 (Length: 502)
Name: NF17888_low_2
Description: NF17888
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17888_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 246; Significance: 1e-136; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 18 - 279
Target Start/End: Original strand, 51273412 - 51273673
Alignment:
| Q |
18 |
aaagacatataaagaaacaattgttcaacaaaaatttgcacaatcaagtatcagaatcgattatccaattaaaatttggtagcttatagctcttgaacat |
117 |
Q |
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| T |
51273412 |
aaagacatataaagaaacaattgttcaacaaaaatttgcacaaccaagtatcagaatcgattatccaattaaaatttggtagcttatagctcttgaacat |
51273511 |
T |
|
| Q |
118 |
aacaatattctagcaatatatactaaaatcaacatggagaatttatcagatgatttattgatagagatatggagtcgtgtttcatacaagacagcagtga |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
51273512 |
aacaatattctagcaatatatactaaaatcaacatggagaatttatcagatgatttattgatagagatatggagtcgtgtttcgtacaagacagcagtga |
51273611 |
T |
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| Q |
218 |
gttgcaaatcaatctcaaagcgtttcttagctttaatctcacagctccaattcagtgaacga |
279 |
Q |
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| T |
51273612 |
gttgcaaatccatctcaaagcgtttcttagctttaatctcacagctccaattcattgaacga |
51273673 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 185; Significance: 1e-100; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 278 - 482
Target Start/End: Original strand, 1623283 - 1623487
Alignment:
| Q |
278 |
gagcagaacctgtgtcaccccatggagaccaacctagggggctcactaaagtgtccataaaagttttcatcaccattactcttgaatattgttgccaagg |
377 |
Q |
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||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||| |
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| T |
1623283 |
gagcaaaatctgtgtcaccccatggagaccaacctagggggctcactaaagtgtccataaaagttttcatcaccataactcttgagaattgttgccaagg |
1623382 |
T |
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| Q |
378 |
ccttcccaagaaggttttgtacttgtcaacaacaggctttagatctgatgcagccctaatttgacaattgtggaatgaaattccagtgttttggaatggg |
477 |
Q |
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| T |
1623383 |
ccttcccaagaaggttttgtacttgtcaacaacaggctttagatctgatgcagccctaatttgacaattgtggaatgaaattccagtgttttggaatggg |
1623482 |
T |
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| Q |
478 |
tcacc |
482 |
Q |
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||||| |
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| T |
1623483 |
tcacc |
1623487 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 183; E-Value: 9e-99
Query Start/End: Original strand, 289 - 483
Target Start/End: Original strand, 1629470 - 1629664
Alignment:
| Q |
289 |
gtgtcaccccatggagaccaacctagggggctcactaaagtgtccataaaagttttcatcaccattactcttgaatattgttgccaaggccttcccaaga |
388 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||| |
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| T |
1629470 |
gtgtcaccccatggagaccaacctagggggctcactaaagtgtccataaaagttttcatcaccattactcttgaatattgttgccaaggtctgcccaaga |
1629569 |
T |
|
| Q |
389 |
aggttttgtacttgtcaacaacaggctttagatctgatgcagccctaatttgacaattgtggaatgaaattccagtgttttggaatgggtcacct |
483 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1629570 |
aggttttgtacttgtcaacaacaggttttagatctgatgcagccctaatttgacaattgtggaatgaaattccagtgttttggaatgggtcacct |
1629664 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 175; E-Value: 5e-94
Query Start/End: Original strand, 289 - 483
Target Start/End: Original strand, 1606172 - 1606366
Alignment:
| Q |
289 |
gtgtcaccccatggagaccaacctagggggctcactaaagtgtccataaaagttttcatcaccattactcttgaatattgttgccaaggccttcccaaga |
388 |
Q |
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||||||||||||||||||||||| |||||||| |||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||| ||||||| |
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| T |
1606172 |
gtgtcaccccatggagaccaacccagggggcttactaaagtgtccatgaaagttttcatcaccataactcttgaatattgttgccaaggcctgcccaaga |
1606271 |
T |
|
| Q |
389 |
aggttttgtacttgtcaacaacaggctttagatctgatgcagccctaatttgacaattgtggaatgaaattccagtgttttggaatgggtcacct |
483 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1606272 |
aggttttgtacttgtcaacaacaggctttagatctgatgcagccctaatttgacaattgtggaatgaaattccagtgttttggaatgggtcacct |
1606366 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 175; E-Value: 5e-94
Query Start/End: Original strand, 289 - 483
Target Start/End: Complemental strand, 10821228 - 10821034
Alignment:
| Q |
289 |
gtgtcaccccatggagaccaacctagggggctcactaaagtgtccataaaagttttcatcaccattactcttgaatattgttgccaaggccttcccaaga |
388 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| |||| |
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| T |
10821228 |
gtgtcaccccatggagaccaacctagggggctgactaaagtgtccataaaagttttcatcaccataactcttgaatattgttgccaaggtcttcctaaga |
10821129 |
T |
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| Q |
389 |
aggttttgtacttgtcaacaacaggctttagatctgatgcagccctaatttgacaattgtggaatgaaattccagtgttttggaatgggtcacct |
483 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
10821128 |
aggttttgtacttgtcaacaacaggctttagatctgatgcagccctaatttgacaattgtggaatgaaattccagtgttttggaatggatcacct |
10821034 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 183; Significance: 9e-99; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 183; E-Value: 9e-99
Query Start/End: Original strand, 289 - 483
Target Start/End: Original strand, 18780988 - 18781182
Alignment:
| Q |
289 |
gtgtcaccccatggagaccaacctagggggctcactaaagtgtccataaaagttttcatcaccattactcttgaatattgttgccaaggccttcccaaga |
388 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||| |
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| T |
18780988 |
gtgtcaccccatggagaccaacctagggggctcactaaagtgtccataaaagttttcatcaccataactcttgaatattgttgccaaggcctgcccaaga |
18781087 |
T |
|
| Q |
389 |
aggttttgtacttgtcaacaacaggctttagatctgatgcagccctaatttgacaattgtggaatgaaattccagtgttttggaatgggtcacct |
483 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18781088 |
aggttttgtacttgtcaacaacaggctttagatctgatgcagccataatttgacaattgtggaatgaaattccagtgttttggaatgggtcacct |
18781182 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 112; Significance: 2e-56; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 63 - 278
Target Start/End: Complemental strand, 5051910 - 5051697
Alignment:
| Q |
63 |
aagtatcagaatcgattatccaattaaaatttggtagcttatagctcttgaacataacaatattctagcaatatatactaaaatcaacatggagaattta |
162 |
Q |
| |
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||||||||||||| ||||||||||| ||||||||||| | ||||||| |||||||| |||| | ||||||||||||||| ||||||||||||||| ||| |
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| T |
5051910 |
aagtatcagaatcaattatccaatttaaatttggtaggtaatagctcgtgaacata-caatctattagcaatatatactacaatcaacatggagaactta |
5051812 |
T |
|
| Q |
163 |
tcagatgatttattgatagagatatggagtcgtgtttcatacaagacagcagtgagttgcaaatcaatctcaaagcgtttcttagctttaatctcacagc |
262 |
Q |
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||||||||| ||| ||| |||||||||||||||| | |||||||||||| |||||| |||||||| ||| ||||||| |||||||| |||||||||||| |
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| T |
5051811 |
tcagatgatatatggatggagatatggagtcgtg-tccatacaagacaggagtgagatgcaaatccatcgcaaagcgcttcttagcaataatctcacagc |
5051713 |
T |
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| Q |
263 |
tccaattcagtgaacg |
278 |
Q |
| |
|
||||||||| |||||| |
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| T |
5051712 |
tccaattcaatgaacg |
5051697 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 90; Significance: 3e-43; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 128 - 253
Target Start/End: Original strand, 14907599 - 14907724
Alignment:
| Q |
128 |
tagcaatatatactaaaatcaacatggagaatttatcagatgatttattgatagagatatggagtcgtgtttcatacaagacagcagtgagttgcaaatc |
227 |
Q |
| |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||| ||| ||||||||| |||||| |
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| T |
14907599 |
tagcaatatatacttaaatcaacatggagaatttatcagatgatttattgatagagacatggattcgtgtttcatacaaaacatcagtgagttacaaatc |
14907698 |
T |
|
| Q |
228 |
aatctcaaagcgtttcttagctttaa |
253 |
Q |
| |
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||||||||||| |||||||||||| |
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|
| T |
14907699 |
catctcaaagcgcatcttagctttaa |
14907724 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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