View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17888_low_20 (Length: 254)
Name: NF17888_low_20
Description: NF17888
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17888_low_20 |
 | |
|
| [»] chr3 (3 HSPs) |
| |
|
| [»] chr7 (2 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 138; Significance: 3e-72; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 117 - 254
Target Start/End: Original strand, 1622974 - 1623111
Alignment:
| Q |
117 |
ctctcaaagtgtacaaaagaatatgagcatgctcttacaataattacaatgaacttaattacaaagaattaagtacaataacggaggtagtaaagaaata |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1622974 |
ctctcaaagtgtacaaaagaatatgagcatgctcttacaataattacaatgaacttaattacaaagaattaagtacaataacggaggtagtaaagaaata |
1623073 |
T |
|
| Q |
217 |
gctatagcacaacataaatgatcaaagaccagatgtaa |
254 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1623074 |
gctatagcacaacataaatgatcaaagaccagatgtaa |
1623111 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 124 - 254
Target Start/End: Original strand, 1605859 - 1605989
Alignment:
| Q |
124 |
agtgtacaaaagaatatgagcatgctcttacaataattacaatgaacttaattacaaagaattaagtacaataacggaggtagtaaagaaatagctatag |
223 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||| | | ||||||||||||||| |
|
|
| T |
1605859 |
agtgtacaaaagaatatgagcatgctcttacaagaattacaatgaacttaattacaaagaattaagtacaataactgaggcaatgaagaaatagctatag |
1605958 |
T |
|
| Q |
224 |
cacaacataaatgatcaaagaccagatgtaa |
254 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
1605959 |
cacaacataaatgatcaaagaccagatgtaa |
1605989 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 9 - 55
Target Start/End: Original strand, 1622866 - 1622912
Alignment:
| Q |
9 |
attattcttaatagctcctctcaaactcaatgtatgattgtacaacg |
55 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1622866 |
attattcttaatagctcctctcaaactcaatgtatgattgtacaacg |
1622912 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 85; Significance: 1e-40; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 126 - 254
Target Start/End: Original strand, 18780677 - 18780805
Alignment:
| Q |
126 |
tgtacaaaagaatatgagcatgctcttacaataattacaatgaacttaattacaaagaattaagtacaataacggaggtagtaaagaaatagctatagca |
225 |
Q |
| |
|
|||||||||||||||| | |||||||||||| |||||||||||| ||||||||||||||||||||||||||| || | | | ||||||||||||||||| |
|
|
| T |
18780677 |
tgtacaaaagaatatgggtatgctcttacaagaattacaatgaatttaattacaaagaattaagtacaataattgaagcaatgaagaaatagctatagca |
18780776 |
T |
|
| Q |
226 |
caacataaatgatcaaagaccagatgtaa |
254 |
Q |
| |
|
||||||||| ||||||||||||||||||| |
|
|
| T |
18780777 |
caacataaaagatcaaagaccagatgtaa |
18780805 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 55
Target Start/End: Original strand, 18780565 - 18780607
Alignment:
| Q |
13 |
ttcttaatagctcctctcaaactcaatgtatgattgtacaacg |
55 |
Q |
| |
|
|||||||||||| | ||||||||||| |||||||||||||||| |
|
|
| T |
18780565 |
ttcttaatagcttccctcaaactcaaggtatgattgtacaacg |
18780607 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University