View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17888_low_21 (Length: 253)
Name: NF17888_low_21
Description: NF17888
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17888_low_21 |
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Alignment Details
Target: chr7 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 13 - 235
Target Start/End: Original strand, 4301717 - 4301939
Alignment:
| Q |
13 |
caagaatatagtgatgttgttggggtactgttgcaaagaaaataaaaatattatcatatatgaatttatttgcgataagtctcttcattggtatttattt |
112 |
Q |
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| T |
4301717 |
caagaatatagtgatgttgttggggtactgttgcaaagaaaataaaaatattatcatatatgaatttatttgcgataagtctcttcattggtatttattt |
4301816 |
T |
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| Q |
113 |
gaaaatagtgaagtagttattgattggcctcgaagatatggtattgcacttgggattgtatttgagaaaagaggaattgataaaacacaacccttgaaat |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4301817 |
gaaaatagtgaagtagttattgattggcctcgaagatatggtattgcacttgggattgtatttgagaaaagaggaattgataaaacacaacccttgaaat |
4301916 |
T |
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| Q |
213 |
ttgtaactgatgaggtttatata |
235 |
Q |
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||||||||||||||||||||||| |
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| T |
4301917 |
ttgtaactgatgaggtttatata |
4301939 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 77; Significance: 8e-36; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 13 - 113
Target Start/End: Original strand, 40668127 - 40668227
Alignment:
| Q |
13 |
caagaatatagtgatgttgttggggtactgttgcaaagaaaataaaaatattatcatatatgaatttatttgcgataagtctcttcattggtatttattt |
112 |
Q |
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| T |
40668127 |
caagaatatagtgatgctgttggggtattgttgcaaagaaaataaaaatattctcatatatgaatatatttgcaataagtctcttcattggcatttattt |
40668226 |
T |
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| Q |
113 |
g |
113 |
Q |
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| T |
40668227 |
g |
40668227 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 113 - 170
Target Start/End: Original strand, 40668312 - 40668369
Alignment:
| Q |
113 |
gaaaatagtgaagtagttattgattggcctcgaagatatggtattgcacttgggattg |
170 |
Q |
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| T |
40668312 |
gaaaatagtgaagcagttcttgattggtctcaaagatatggtattgcacttgggattg |
40668369 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 169 - 227
Target Start/End: Original strand, 5085365 - 5085423
Alignment:
| Q |
169 |
tgtatttgagaaaagaggaattgataaaacacaacccttgaaatttgtaactgatgagg |
227 |
Q |
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|||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
5085365 |
tgtattcgagaaaagaggaattgatgaaacacaacccttgaaatttgtaactgatgagg |
5085423 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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