View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17888_low_23 (Length: 236)
Name: NF17888_low_23
Description: NF17888
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17888_low_23 |
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Alignment Details
Target: chr8 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 19778262 - 19778482
Alignment:
| Q |
1 |
ctcatgcttcttcattttcagatattcccacacactccaccatctctctgatcacggaaaatactctcacagtaattttctctcgtgtacaactccttca |
100 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19778262 |
ctcatgcttcttcattttcagatactcccacacactccaccatctctctgatcacggaaaatactctcacagtaattttctctcgtgtacaactccttca |
19778361 |
T |
|
| Q |
101 |
tatgatttttgttgtgtttcaaataattctgttttattcctttcccttgttatata-nnnnnnnnattgaatgcaaggtttcatttgaatatagtgtggg |
199 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
19778362 |
tatgatttttgttgtgtttcaaataattctgttttattcctttcccttgttatatatttttttttattgaatgcaaggtttcatttgaatatagtgtggg |
19778461 |
T |
|
| Q |
200 |
ttgtaacatgtatactctttg |
220 |
Q |
| |
|
||||||||||||||||||||| |
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| T |
19778462 |
ttgtaacatgtatactctttg |
19778482 |
T |
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