View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17888_low_24 (Length: 234)
Name: NF17888_low_24
Description: NF17888
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17888_low_24 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 14 - 234
Target Start/End: Original strand, 24067039 - 24067259
Alignment:
| Q |
14 |
tttttcacaaaagagttcttctacatctaataacagtggaaatctttcaagaagctattcacagaagaatccatcaataggtaagaaatgcaccaatata |
113 |
Q |
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| T |
24067039 |
tttttcacaaaagagttcttctacatctaataacagtggaaatctttcaagaagctattcacagaagaatccatcaataggtaagaaatgcaccaatata |
24067138 |
T |
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| Q |
114 |
gccaaagaacagaaagcaagattttacatcatgaggagatgcgtagccatgttagtttgttggcacaaacatggagattaatagtattcctgaagggagg |
213 |
Q |
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| T |
24067139 |
gccaaagaacagaaagcaagattttacatcatgaggagatgcgtagccatgttagtttgttggcacaaacatggagattaatagtattcctaaagggagg |
24067238 |
T |
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| Q |
214 |
tgcagatagcagaacaagtct |
234 |
Q |
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| T |
24067239 |
tgcagatagcagaacaagtct |
24067259 |
T |
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Target: chr2 (Bit Score: 57; Significance: 6e-24; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 99 - 191
Target Start/End: Original strand, 41675335 - 41675427
Alignment:
| Q |
99 |
aaatgcaccaatatagccaaagaacagaaagcaagattttacatcatgaggagatgcgtagccatgttagtttgttggcacaaacatggagat |
191 |
Q |
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| T |
41675335 |
aaatgcaccaatttagctaaggaacagaaagcaagattttacataatgagaaggtgtgttgccatgttagtttgttggcataaacatggagat |
41675427 |
T |
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