View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17888_low_25 (Length: 217)

Name: NF17888_low_25
Description: NF17888
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17888_low_25
NF17888_low_25
[»] chr6 (13 HSPs)
chr6 (1-198)||(31562832-31563029)
chr6 (5-198)||(33262429-33262616)
chr6 (46-198)||(33387957-33388109)
chr6 (5-198)||(33271598-33271782)
chr6 (66-198)||(28870242-28870374)
chr6 (7-187)||(33644560-33644734)
chr6 (4-198)||(33304287-33304475)
chr6 (7-104)||(33057463-33057554)
chr6 (7-98)||(33398957-33399042)
chr6 (144-187)||(33398886-33398929)
chr6 (152-198)||(33409781-33409827)
chr6 (152-197)||(33057382-33057427)
chr6 (47-104)||(33409869-33409926)
[»] scaffold1408 (1 HSPs)
scaffold1408 (1-198)||(447-638)
[»] scaffold0428 (1 HSPs)
scaffold0428 (1-198)||(6193-6384)
[»] chr4 (2 HSPs)
chr4 (8-49)||(31157172-31157213)
chr4 (69-117)||(31504269-31504317)


Alignment Details
Target: chr6 (Bit Score: 198; Significance: 1e-108; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 198
Target Start/End: Original strand, 31562832 - 31563029
Alignment:
Q  1 ggactacaggattggtcatttttaactgtccgaaattggctgagagtgagagggagcattgcaggagcatgacattttcatggatggcacaattcattaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31562832 ggactacaggattggtcatttttaactgtccgaaattggctgagagtgagagggagcattgcaggagcatgacattttcatggatggcacaattcattaa 31562931  T
Q  101 ggcatatccacactcctaccctgcctatttggatgagtttcatattgttgttccaggaagtgaaataccgaattggatcaacaatcatagcatgggtg 198  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31562932 ggcatatccacactcctaccctgcctatttggatgagtttcatattgttgttccaggaagtgaaataccgaattggatcaacaatcatagcatgggtg 31563029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 5 - 198
Target Start/End: Complemental strand, 33262616 - 33262429
Alignment:
Q  5 tacaggattggtcatttttaactgtccgaaattggctgagagtgagagggagcattgcaggagcatgacattttcatggatggcacaattcattaaggca 104  Q
    |||||||||||||||||| |||||||| |||||||      |||||||||| | |||||| ||||||||||||||||||| | ||||||||||| | |||    
T  33262616 tacaggattggtcattttcaactgtccaaaattgg------gtgagagggaacgttgcagtagcatgacattttcatggacgacacaattcattcaagca 33262523  T
Q  105 tatccacactcctaccctgcctatttggatgagtttcatattgttgttccaggaagtgaaataccgaattggatcaacaatcatagcatgggtg 198  Q
    || | ||| ||||||||| | ||||||||||||||||| ||||||  |||||||| ||||||||| | ||||||||||||||| ||||||||||    
T  33262522 taccaacaatcctaccctacttatttggatgagtttcaaattgttagtccaggaaatgaaataccaagttggatcaacaatcagagcatgggtg 33262429  T

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Target: chr6; HSP #3
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 46 - 198
Target Start/End: Complemental strand, 33388109 - 33387957
Alignment:
Q  46 gtgagagggagcattgcaggagcatgacattttcatggatggcacaattcattaaggcatatccacactcctaccctgcctatttggatgagtttcatat 145  Q
    |||| ||||||  |||||| ||||||||||||||||||||| ||||||| ||||||||| | | |||  |||||||||||||||| |||  | |||| ||    
T  33388109 gtgatagggagtgttgcagtagcatgacattttcatggatgacacaatttattaaggcaaaccgacaaacctaccctgcctattttgatacgattcaaat 33388010  T
Q  146 tgttgttccaggaagtgaaataccgaattggatcaacaatcatagcatgggtg 198  Q
    ||||  | |||||||||||||||||| ||||||||||||||| ||||||||||    
T  33388009 tgttactacaggaagtgaaataccgagttggatcaacaatcagagcatgggtg 33387957  T

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Target: chr6; HSP #4
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 5 - 198
Target Start/End: Complemental strand, 33271782 - 33271598
Alignment:
Q  5 tacaggattggtcatttttaactgtccgaaattggctgagagtgagagggagcattgcaggagcatgacattttcatggatggcacaattcattaaggca 104  Q
    |||||||||||||||||| |||||||| |||||||||||  |||||||||| | |||||| ||| |||||||||||||||||  ||||||||||| ||||    
T  33271782 tacaggattggtcattttcaactgtccaaaattggctgactgtgagagggaacgttgcagtagcttgacattttcatggatgatacaattcattatggca 33271683  T
Q  105 tatccacactcctaccctgcctatttggatgagtttcatattgttgttccaggaagtgaaataccgaattggatcaacaatcatagcatgggtg 198  Q
     | || || |         | |||||| |||||||||||||| |   |||||||||||||||||| | ||||||||||||||| ||||||||||    
T  33271682 aacccgcaat---------cttatttgaatgagtttcatattataactccaggaagtgaaataccaagttggatcaacaatcagagcatgggtg 33271598  T

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Target: chr6; HSP #5
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 66 - 198
Target Start/End: Original strand, 28870242 - 28870374
Alignment:
Q  66 agcatgacattttcatggatggcacaattcattaaggcatatccacactcctaccctgcctatttggatgagtttcatattgttgttccaggaagtgaaa 165  Q
    |||||| ||||||||||||||  ||||||||||  |||||| | ||| ||||||| || ||||||||||| |||| ||||||||  ||||||||||||||    
T  28870242 agcatggcattttcatggatgaaacaattcattcgggcataccgacaatcctaccttgtctatttggatgcgtttaatattgttactccaggaagtgaaa 28870341  T
Q  166 taccgaattggatcaacaatcatagcatgggtg 198  Q
    |||| | |||||| |||||||| ||||||||||    
T  28870342 taccaagttggattaacaatcagagcatgggtg 28870374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 7 - 187
Target Start/End: Original strand, 33644560 - 33644734
Alignment:
Q  7 caggattggtcatttttaactgtccgaaattggctgagagtgagagggagcattgcaggagcatgacattttcatggatggcacaattcattaaggcata 106  Q
    |||||||||||||||| |||||| | |||||||      |||||||||| | ||||||||||||||||||||||||||||  |||||||||| ||||| |    
T  33644560 caggattggtcattttcaactgttcaaaattgg------gtgagagggaacgttgcaggagcatgacattttcatggatgatacaattcattcaggcaaa 33644653  T
Q  107 tccacactcctaccctgcctatttggatgagtttcatattgttgttccaggaagtgaaataccgaattggatcaacaatca 187  Q
     | ||| ||||||||  |||| || |||  |  ||| |||||   |||||||||||||||||| | |||||||||||||||    
T  33644654 cctacaatcctacccaacctactttgataggactcaaattgtaactccaggaagtgaaataccaagttggatcaacaatca 33644734  T

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Target: chr6; HSP #7
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 4 - 198
Target Start/End: Complemental strand, 33304475 - 33304287
Alignment:
Q  4 ctacaggattggtcatttttaactgtccgaaattggctgagagtgagagggagcattgcaggagcatgacattttcatggatggcacaattcattaaggc 103  Q
    ||||||||||| ||||||| |||||||| |||||||      |||||||||| | |||||| |||||||||||||||||| || ||||||||||| ||||    
T  33304475 ctacaggattgttcattttcaactgtccaaaattgg------gtgagagggaacgttgcagtagcatgacattttcatggttgacacaattcattgaggc 33304382  T
Q  104 atatccacactcctaccctgcctatttggatgagtttcatattgttgttccaggaagtgaaataccgaattggatcaacaatcatagcatgggtg 198  Q
    | |  |||| ||||||||| | |  || |||  | |||| ||||||  |||||||| ||||||||| | ||||||||||||| | ||| ||||||    
T  33304381 aaactcacaatcctaccctacgtcctttgattggattcaaattgttactccaggaaatgaaataccaatttggatcaacaataagagcgtgggtg 33304287  T

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Target: chr6; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 7 - 104
Target Start/End: Complemental strand, 33057554 - 33057463
Alignment:
Q  7 caggattggtcatttttaactgtccgaaattggctgagagtgagagggagcattgcaggagcatgacattttcatggatggcacaattcattaaggca 104  Q
    |||||||| ||||||| |||||||| |||||||      |||||||||| |||||||||||||||||| ||| |||||||  ||||||||||||||||    
T  33057554 caggattgctcattttcaactgtccaaaattgg------gtgagagggaacattgcaggagcatgacacttttatggatgaaacaattcattaaggca 33057463  T

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Target: chr6; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 7 - 98
Target Start/End: Complemental strand, 33399042 - 33398957
Alignment:
Q  7 caggattggtcatttttaactgtccgaaattggctgagagtgagagggagcattgcaggagcatgacattttcatggatggcacaattcatt 98  Q
    |||||||||||||||| |||||| | |||||||      |||||||||| | |||||| |||||||||||||||||||||  ||||||||||    
T  33399042 caggattggtcattttcaactgttcaaaattgg------gtgagagggaacgttgcagtagcatgacattttcatggatgatacaattcatt 33398957  T

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Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 144 - 187
Target Start/End: Complemental strand, 33398929 - 33398886
Alignment:
Q  144 attgttgttccaggaagtgaaataccgaattggatcaacaatca 187  Q
    |||||| ||||||||||||||||||| | |||||||||||||||    
T  33398929 attgttattccaggaagtgaaataccaagttggatcaacaatca 33398886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 152 - 198
Target Start/End: Complemental strand, 33409827 - 33409781
Alignment:
Q  152 tccaggaagtgaaataccgaattggatcaacaatcatagcatgggtg 198  Q
    |||||||||||||||||| | ||||||||||||||| ||| ||||||    
T  33409827 tccaggaagtgaaataccaagttggatcaacaatcagagcgtgggtg 33409781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 152 - 197
Target Start/End: Complemental strand, 33057427 - 33057382
Alignment:
Q  152 tccaggaagtgaaataccgaattggatcaacaatcatagcatgggt 197  Q
    |||||||||||||||||| | ||||||||||||||| || ||||||    
T  33057427 tccaggaagtgaaataccaagttggatcaacaatcagaggatgggt 33057382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 47 - 104
Target Start/End: Complemental strand, 33409926 - 33409869
Alignment:
Q  47 tgagagggagcattgcaggagcatgacattttcatggatggcacaattcattaaggca 104  Q
    ||||||||| | |||||| ||||| ||| |||||||||||||||| |||||| |||||    
T  33409926 tgagagggaacgttgcagtagcatcacaatttcatggatggcacatttcattcaggca 33409869  T

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Target: scaffold1408 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: scaffold1408
Description:

Target: scaffold1408; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 198
Target Start/End: Complemental strand, 638 - 447
Alignment:
Q  1 ggactacaggattggtcatttttaactgtccgaaattggctgagagtgagagggagcattgcaggagcatgacattttcatggatggcacaattcattaa 100  Q
    |||||| ||||||||||||||| |||||||| |||||||      ||||||||||   ||| || ||||| |||||||||||||||  |||||||||| |    
T  638 ggactaaaggattggtcattttcaactgtccaaaattgg------gtgagagggaatgttgtagtagcataacattttcatggatgaaacaattcattca 545  T
Q  101 ggcatatccacactcctaccctgcctatttggatgagtttcatattgttgttccaggaagtgaaataccgaattggatcaacaatcatagcatgggtg 198  Q
    |||| | | ||| ||||||  | | |||||| ||||| |||| ||||||  |||||||||||||||||| |  |||||||||||||| ||||||||||    
T  544 ggcaaaccaacaatcctacggtccgtatttgtatgagcttcaaattgttactccaggaagtgaaataccaagctggatcaacaatcagagcatgggtg 447  T

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Target: scaffold0428 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: scaffold0428
Description:

Target: scaffold0428; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 198
Target Start/End: Complemental strand, 6384 - 6193
Alignment:
Q  1 ggactacaggattggtcatttttaactgtccgaaattggctgagagtgagagggagcattgcaggagcatgacattttcatggatggcacaattcattaa 100  Q
    |||||| ||||||||||||||| |||||||| |||||||      ||||||||||   ||| || ||||| |||||||||||||||  |||||||||| |    
T  6384 ggactaaaggattggtcattttcaactgtccaaaattgg------gtgagagggaatgttgtagtagcataacattttcatggatgaaacaattcattca 6291  T
Q  101 ggcatatccacactcctaccctgcctatttggatgagtttcatattgttgttccaggaagtgaaataccgaattggatcaacaatcatagcatgggtg 198  Q
    |||| | | ||| ||||||  | | |||||| ||||| |||| ||||||  |||||||||||||||||| |  |||||||||||||| ||||||||||    
T  6290 ggcaaaccaacaatcctacggtccgtatttgtatgagcttcaaattgttactccaggaagtgaaataccaagctggatcaacaatcagagcatgggtg 6193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 30; Significance: 0.00000007; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 8 - 49
Target Start/End: Complemental strand, 31157213 - 31157172
Alignment:
Q  8 aggattggtcatttttaactgtccgaaattggctgagagtga 49  Q
    ||||||||||||||| |||||||| ||||||| |||||||||    
T  31157213 aggattggtcattttcaactgtcctaaattgggtgagagtga 31157172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 69 - 117
Target Start/End: Original strand, 31504269 - 31504317
Alignment:
Q  69 atgacattttcatggatggcacaattcattaaggcatatccacactcct 117  Q
    ||||||||||||||||||  |||||||||||||||| | ||||| ||||    
T  31504269 atgacattttcatggatgatacaattcattaaggcaaacccacaatcct 31504317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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