View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17888_low_7 (Length: 435)
Name: NF17888_low_7
Description: NF17888
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17888_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 286; Significance: 1e-160; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 17 - 422
Target Start/End: Original strand, 50389468 - 50389880
Alignment:
| Q |
17 |
catctcatacacataactcaaatttacaatacacacacatgcatatgtttcattctttcaaaaaatcttttnnnnnnnntgcacatgtgtataatacgaa |
116 |
Q |
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| T |
50389468 |
catctcatacacataactcaaatttacaatacacacacatgcatatgtttcattctttcaaaaaatcttttaaaaaaaatgcacatgt--ataatacgaa |
50389565 |
T |
|
| Q |
117 |
cttctaacaaaagttctatcatcattcnnnnnnnnnnn--------gttctatcatattt-ctgtcaggcaattagtgtataaatgttattatacaattt |
207 |
Q |
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| T |
50389566 |
cttctaacaaaagttatatcatccttaaaaataaaaaaataaaaaagttatatcatattttctgtcaggaaattagtgtataaatgttattatacatttt |
50389665 |
T |
|
| Q |
208 |
taaagatgaaatgctcaagtttaccaggataataaatgaaaacgctttccttttctttttctaataaaaaactactcttattacattttaaatgatcaaa |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50389666 |
taaagatgaaatgctcaagtttaccaggataataaatgaaaacgctttccttttctttttctaataaaaaactactcttattacattttaaatgatcaaa |
50389765 |
T |
|
| Q |
308 |
ttgttcttttattacttatgcaaatatttgttatcgatcacttcagacttgagatctttgagttgatgacattgaatgacttttggataggacacttatg |
407 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50389766 |
ttgttcttttattacttatgcaaatatttgttatcgatcacttcagacttgagatctttgagttgatgacattgaatgacttttggataggacacttatg |
50389865 |
T |
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| Q |
408 |
tccgtcattgtcttc |
422 |
Q |
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| T |
50389866 |
tccgtcattgtcttc |
50389880 |
T |
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