View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17888_low_9 (Length: 396)
Name: NF17888_low_9
Description: NF17888
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17888_low_9 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 337; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 1 - 396
Target Start/End: Original strand, 24067366 - 24067761
Alignment:
| Q |
1 |
aatcacctataagttttgcacattagcaaatattcacttcattctagtattagtgcatcttcctccttttctttttggaatgataaatgttagcatgtta |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||| |
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| T |
24067366 |
aatcacctataagttttgcacattagcaaatattcacttcattctagtattagtgcatcttcctctttttctttttggaatgataaatgttagtatgtta |
24067465 |
T |
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| Q |
101 |
gtatactatagtttcagattcttattaaacaataatcaccatacaataatgttagattcatatattttcttaatgcaaggttcatgttctaatgctagat |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24067466 |
gtatactatagtttcagattcttattaaacaataatcaccatacaataatgctagattcatatattttcttaatgcaaggttcatgttctaatgctagat |
24067565 |
T |
|
| Q |
201 |
gccactcnnnnnnnnntaatgttctaatgctagattcatctcatctatatgtctgattttttcatcactttatttgtgtgtttggaaggaaaaggattta |
300 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
24067566 |
gccactaaaaaaaaaataatgttctaatgctagattcatctcatctatatgtctgattatttcatcactttatttgtgtgtttggaaggaaaaggattta |
24067665 |
T |
|
| Q |
301 |
ttctttgtaaataatagtaataatttggatatttaactcaacttagcaccatagtagtactatttggatctgcattgaaaatgtaagcctcgttcc |
396 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
24067666 |
ttctttgtaaataatagtaataatttggatatttaactcaacatagcatcatagtagtactatttggatctgcattgaaaatgtaagccacgttcc |
24067761 |
T |
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