View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17889_high_2 (Length: 412)

Name: NF17889_high_2
Description: NF17889
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17889_high_2
NF17889_high_2
[»] chr5 (11 HSPs)
chr5 (15-248)||(1501377-1501610)
chr5 (282-396)||(1501229-1501343)
chr5 (157-248)||(25955968-25956059)
chr5 (158-248)||(38280281-38280371)
chr5 (292-347)||(38951524-38951579)
chr5 (156-237)||(7886354-7886435)
chr5 (157-248)||(42250116-42250207)
chr5 (291-338)||(38280192-38280239)
chr5 (292-338)||(25955879-25955925)
chr5 (293-334)||(7886489-7886530)
chr5 (282-338)||(42250241-42250296)
[»] chr4 (5 HSPs)
chr4 (157-248)||(52055156-52055247)
chr4 (157-248)||(1158263-1158354)
chr4 (297-338)||(49866778-49866819)
chr4 (359-396)||(14056258-14056295)
chr4 (293-338)||(52055067-52055112)
[»] chr7 (19 HSPs)
chr7 (157-248)||(496683-496774)
chr7 (155-248)||(7527272-7527365)
chr7 (156-248)||(11765706-11765798)
chr7 (157-247)||(25185942-25186032)
chr7 (156-248)||(2286457-2286549)
chr7 (157-248)||(48057707-48057798)
chr7 (164-248)||(23844642-23844726)
chr7 (282-338)||(40855070-40855125)
chr7 (157-221)||(42535249-42535313)
chr7 (291-338)||(23844768-23844815)
chr7 (293-340)||(31427168-31427215)
chr7 (293-338)||(2286593-2286638)
chr7 (156-212)||(4649481-4649537)
chr7 (291-338)||(496816-496863)
chr7 (291-338)||(11765840-11765887)
chr7 (156-224)||(31427292-31427362)
chr7 (292-338)||(42535134-42535180)
chr7 (291-338)||(7527183-7527230)
chr7 (361-396)||(12103200-12103235)
[»] chr8 (4 HSPs)
chr8 (162-248)||(3780367-3780453)
chr8 (157-248)||(4076952-4077043)
chr8 (292-338)||(3780278-3780324)
chr8 (294-338)||(4076863-4076907)
[»] chr2 (4 HSPs)
chr2 (160-248)||(11828960-11829048)
chr2 (157-248)||(13922185-13922276)
chr2 (282-338)||(11829082-11829137)
chr2 (291-338)||(13922318-13922365)
[»] chr3 (10 HSPs)
chr3 (151-248)||(47940820-47940917)
chr3 (156-248)||(49786392-49786484)
chr3 (157-208)||(29836817-29836868)
chr3 (157-248)||(8152977-8153070)
chr3 (282-340)||(49786518-49786575)
chr3 (157-248)||(8436904-8436995)
chr3 (163-247)||(48778982-48779066)
chr3 (291-338)||(8436815-8436862)
chr3 (359-396)||(13823023-13823060)
chr3 (291-327)||(47940959-47940995)
[»] chr6 (2 HSPs)
chr6 (157-248)||(33594527-33594618)
chr6 (291-338)||(33594438-33594485)
[»] chr1 (11 HSPs)
chr1 (157-248)||(20186849-20186940)
chr1 (157-248)||(30339636-30339727)
chr1 (157-248)||(51787272-51787363)
chr1 (157-248)||(43740415-43740506)
chr1 (179-221)||(9673004-9673046)
chr1 (282-340)||(20186758-20186815)
chr1 (291-338)||(9672891-9672938)
chr1 (292-338)||(51787405-51787451)
chr1 (293-338)||(30339771-30339816)
chr1 (359-396)||(17224166-17224203)
chr1 (359-396)||(25871704-25871741)


Alignment Details
Target: chr5 (Bit Score: 181; Significance: 1e-97; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 15 - 248
Target Start/End: Complemental strand, 1501610 - 1501377
Alignment:
Q  15 cctgtgcaagtaaaagtttttcctcaatgnnnnnnnggtaacaacattgaatcaaatcattttgatgtttgaggatcctctaggctctaataaagctccc 114  Q
    |||| ||||||||||||||||||| ||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1501610 cctgagcaagtaaaagtttttccttaatgaaaaaaaggtaacaacattgaatcaaatcattttgatgtttgaggatcctctaggctctaataaagctccc 1501511  T
Q  115 tcttcaggtgcaaaagatttcgttactgtggttcataattttgagtggtgatacatgcacattcataggtggcatacacacttaaacctccacataaaca 214  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| || |||||||| ||||||||||||||||||||||||||||    
T  1501510 tcttcaggtgcaaaagatttcattactgtggttcataattttgagtggtgatacatgcagatccataggtgacatacacacttaaacctccacataaaca 1501411  T
Q  215 tatgacatgtagcctaaaccccataaacactttg 248  Q
    |||||||||||||||| |||||||| ||||||||    
T  1501410 tatgacatgtagcctagaccccatatacactttg 1501377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 282 - 396
Target Start/End: Complemental strand, 1501343 - 1501229
Alignment:
Q  282 aaatatgtggggggtgtatgggtggtatgaaaatatgagtggtctatcaatcatttttccataatttttgagtccttataggtataccaccataggtggc 381  Q
    |||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1501343 aaatatgtggggggtgtatgtgtggtatgaaaatatgagtggtctaccaatcatttttccataatttttgagtccttataggtataccaccataggtggc 1501244  T
Q  382 aatacaccttctacc 396  Q
    |||||||||||||||    
T  1501243 aatacaccttctacc 1501229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 157 - 248
Target Start/End: Complemental strand, 25956059 - 25955968
Alignment:
Q  157 gagtggtgatacatgcacattcataggtggcatacacacttaaacctccacataaacatatgacatgtagcctaaaccccataaacactttg 248  Q
    ||||||||||||||||||| |||||||||||||||||| ||||||||||||| |||||| |||||||| ||||| |||||| ||||||||||    
T  25956059 gagtggtgatacatgcacactcataggtggcatacacatttaaacctccacacaaacatgtgacatgtggcctagaccccacaaacactttg 25955968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 158 - 248
Target Start/End: Complemental strand, 38280371 - 38280281
Alignment:
Q  158 agtggtgatacatgcacattcataggtggcatacacacttaaacctccacataaacatatgacatgtagcctaaaccccataaacactttg 248  Q
    |||||||||||||| |||| ||||||||| |||||||||||||||||||||||||||| ||||| ||  |||| |||||| ||||||||||    
T  38280371 agtggtgatacatgtacatccataggtggtatacacacttaaacctccacataaacatgtgacacgtgtcctagaccccacaaacactttg 38280281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 292 - 347
Target Start/End: Original strand, 38951524 - 38951579
Alignment:
Q  292 ggggtgtatgggtggtatgaaaatatgagtggtctatcaatcatttttccataatt 347  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  38951524 ggggtgtatgggtggtatgaaaatatgagtggtctatcaatcatttttcaataatt 38951579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 156 - 237
Target Start/End: Original strand, 7886354 - 7886435
Alignment:
Q  156 tgagtggtgatacatgcacattcataggtggcatacacacttaaacctccacataaacatatgacatgtagcctaaacccca 237  Q
    ||||||||||| |||||| | | ||||||| |||||||||||||||||||||| |||||| |||||||| ||||||| ||||    
T  7886354 tgagtggtgattcatgcatacttataggtgacatacacacttaaacctccacacaaacatgtgacatgtggcctaaatccca 7886435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 157 - 248
Target Start/End: Original strand, 42250116 - 42250207
Alignment:
Q  157 gagtggtgatacatgcacattcataggtggcatacacacttaaacctccacataaacatatgacatgtagcctaaaccccataaacactttg 248  Q
    |||||||||||||||||||  ||||  || |||| ||||||||||||||||| |||||| |||||||| || || |||||| ||||||||||    
T  42250116 gagtggtgatacatgcacacccataaatgacatagacacttaaacctccacacaaacatgtgacatgtggcttagaccccacaaacactttg 42250207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 291 - 338
Target Start/End: Complemental strand, 38280239 - 38280192
Alignment:
Q  291 gggggtgtatgggtggtatgaaaatatgagtggtctatcaatcatttt 338  Q
    ||||||||||| |||||||| |||||||||||||||| ||||||||||    
T  38280239 gggggtgtatgagtggtatggaaatatgagtggtctaccaatcatttt 38280192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 292 - 338
Target Start/End: Complemental strand, 25955925 - 25955879
Alignment:
Q  292 ggggtgtatgggtggtatgaaaatatgagtggtctatcaatcatttt 338  Q
    |||||||||||||| ||||||| ||||||||||||| ||||||||||    
T  25955925 ggggtgtatgggtgatatgaaattatgagtggtctaccaatcatttt 25955879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 293 - 334
Target Start/End: Original strand, 7886489 - 7886530
Alignment:
Q  293 gggtgtatgggtggtatgaaaatatgagtggtctatcaatca 334  Q
    ||||||||||||||||||||||||| ||||||||| ||||||    
T  7886489 gggtgtatgggtggtatgaaaatattagtggtctaccaatca 7886530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 282 - 338
Target Start/End: Original strand, 42250241 - 42250296
Alignment:
Q  282 aaatatgtggggggtgtatgggtggtatgaaaatatgagtggtctatcaatcatttt 338  Q
    ||||||||||||| || | ||||| ||||||| ||||||||||||| ||||||||||    
T  42250241 aaatatgtggggg-tgcacgggtgatatgaaattatgagtggtctaccaatcatttt 42250296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 68; Significance: 3e-30; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 157 - 248
Target Start/End: Complemental strand, 52055247 - 52055156
Alignment:
Q  157 gagtggtgatacatgcacattcataggtggcatacacacttaaacctccacataaacatatgacatgtagcctaaaccccataaacactttg 248  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||| |||||||| ||||| |||||| ||||||||||    
T  52055247 gagtggtgatacatgcacattcataggtggcatacacacttaaacctctacacaaacatgtgacatgtggcctagaccccacaaacactttg 52055156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 157 - 248
Target Start/End: Complemental strand, 1158354 - 1158263
Alignment:
Q  157 gagtggtgatacatgcacattcataggtggcatacacacttaaacctccacataaacatatgacatgtagcctaaaccccataaacactttg 248  Q
    ||||| ||||||||||||||  ||||  ||| |||||||||||||||||||| |||||| |||||||| ||||| |||| | ||||| ||||    
T  1158354 gagtgatgatacatgcacatcgatagaaggcgtacacacttaaacctccacacaaacatgtgacatgtggcctagaccctacaaacattttg 1158263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 297 - 338
Target Start/End: Original strand, 49866778 - 49866819
Alignment:
Q  297 gtatgggtggtatgaaaatatgagtggtctatcaatcatttt 338  Q
    |||||| |||||||||||||||||||||||| ||||||||||    
T  49866778 gtatggatggtatgaaaatatgagtggtctaccaatcatttt 49866819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 359 - 396
Target Start/End: Complemental strand, 14056295 - 14056258
Alignment:
Q  359 ataggtataccaccataggtggcaatacaccttctacc 396  Q
    |||||| |||||||||||||||||||||||||| ||||    
T  14056295 ataggtgtaccaccataggtggcaatacaccttatacc 14056258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 293 - 338
Target Start/End: Complemental strand, 52055112 - 52055067
Alignment:
Q  293 gggtgtatgggtggtatgaaaatatgagtggtctatcaatcatttt 338  Q
    |||||||||| || ||||||| ||||||||||||| ||||||||||    
T  52055112 gggtgtatggatgttatgaaattatgagtggtctaccaatcatttt 52055067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 64; Significance: 7e-28; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 157 - 248
Target Start/End: Original strand, 496683 - 496774
Alignment:
Q  157 gagtggtgatacatgcacattcataggtggcatacacacttaaacctccacataaacatatgacatgtagcctaaaccccataaacactttg 248  Q
    ||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||| ||  |||| |||||| ||||||||||    
T  496683 gagtggtgatacatgtacatccataggtggcatacacacttaaacctccacataaacatatgacacgtgtcctagaccccacaaacactttg 496774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 155 - 248
Target Start/End: Complemental strand, 7527365 - 7527272
Alignment:
Q  155 ttgagtggtgatacatgcacattcataggtggcatacacacttaaacctccacataaacatatgacatgtagcctaaaccccataaacactttg 248  Q
    ||||| ||||||||||||| |||||| ||||||||||||||||||||||||||| |||||| |||||||| ||||| || ||||||||||||||    
T  7527365 ttgaggggtgatacatgcatattcattggtggcatacacacttaaacctccacacaaacatgtgacatgtggcctagactccataaacactttg 7527272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 156 - 248
Target Start/End: Original strand, 11765706 - 11765798
Alignment:
Q  156 tgagtggtgatacatgcacattcataggtggcatacacacttaaacctccacataaacatatgacatgtagcctaaaccccataaacactttg 248  Q
    |||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||| ||||| ||  |||  |||||| ||||||||||    
T  11765706 tgagtggtgatacatgtacatccataggtggcatacacacttaaacctccacataaacatgtgacacgtgtccttgaccccacaaacactttg 11765798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 157 - 247
Target Start/End: Complemental strand, 25186032 - 25185942
Alignment:
Q  157 gagtggtgatacatgcacattcataggtggcatacacacttaaacctccacataaacatatgacatgtagcctaaaccccataaacacttt 247  Q
    |||||||||| |||||||| ||||||||| |||||||||||||||||||||| |||||| |||||||| ||||| |||||| ||| |||||    
T  25186032 gagtggtgatgcatgcacactcataggtgacatacacacttaaacctccacacaaacatgtgacatgtggcctagaccccacaaatacttt 25185942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 156 - 248
Target Start/End: Original strand, 2286457 - 2286549
Alignment:
Q  156 tgagtggtgatacatgcacattcataggtggcatacacacttaaacctccacataaacatatgacatgtagcctaaaccccataaacactttg 248  Q
    ||||| ||||||||||||||   || ||||||||||||||||||||||||||| |||||| |||||||| ||||| |||||| ||||||||||    
T  2286457 tgagtagtgatacatgcacacctattggtggcatacacacttaaacctccacacaaacatgtgacatgtggcctagaccccacaaacactttg 2286549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 157 - 248
Target Start/End: Complemental strand, 48057798 - 48057707
Alignment:
Q  157 gagtggtgatacatgcacattcataggtggcatacacacttaaacctccacataaacatatgacatgtagcctaaaccccataaacactttg 248  Q
    ||||||||||||||| |||  ||||||||||||||| | |||||| ||||||||||||| ||||| ||  |||| |||||| ||||||||||    
T  48057798 gagtggtgatacatgtacacccataggtggcatacatatttaaacttccacataaacatgtgacacgtgtcctagaccccacaaacactttg 48057707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 164 - 248
Target Start/End: Original strand, 23844642 - 23844726
Alignment:
Q  164 gatacatgcacattcataggtggcatacacacttaaacctccacataaacatatgacatgtagcctaaaccccataaacactttg 248  Q
    ||||||||||||| |||||||  |||||||||| ||| |||||||||||||| ||||||||  |||| ||| || ||||||||||    
T  23844642 gatacatgcacatccataggtaacatacacactcaaatctccacataaacatgtgacatgtgccctagacctcacaaacactttg 23844726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 282 - 338
Target Start/End: Complemental strand, 40855125 - 40855070
Alignment:
Q  282 aaatatgtggggggtgtatgggtggtatgaaaatatgagtggtctatcaatcatttt 338  Q
    ||||||||||||| |||||||||||||||||||||| ||||||||| ||||||||||    
T  40855125 aaatatgtggggg-tgtatgggtggtatgaaaatataagtggtctaacaatcatttt 40855070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 157 - 221
Target Start/End: Complemental strand, 42535313 - 42535249
Alignment:
Q  157 gagtggtgatacatgcacattcataggtggcatacacacttaaacctccacataaacatatgaca 221  Q
    ||||| ||||| ||| ||| ||||||||| ||||||||||||||||||||||||||||| |||||    
T  42535313 gagtgatgatatatgtacactcataggtgacatacacacttaaacctccacataaacatgtgaca 42535249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 291 - 338
Target Start/End: Original strand, 23844768 - 23844815
Alignment:
Q  291 gggggtgtatgggtggtatgaaaatatgagtggtctatcaatcatttt 338  Q
    |||||||||| ||||||||||||||||||||||| |||||||||||||    
T  23844768 gggggtgtataggtggtatgaaaatatgagtggtttatcaatcatttt 23844815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 293 - 340
Target Start/End: Complemental strand, 31427215 - 31427168
Alignment:
Q  293 gggtgtatgggtggtatgaaaatatgagtggtctatcaatcatttttc 340  Q
    |||||| |||||||||||||||||||||||||||| ||||||||||||    
T  31427215 gggtgtttgggtggtatgaaaatatgagtggtctaccaatcatttttc 31427168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 293 - 338
Target Start/End: Original strand, 2286593 - 2286638
Alignment:
Q  293 gggtgtatgggtggtatgaaaatatgagtggtctatcaatcatttt 338  Q
    ||||||||||||||||||||| ||||||||||||| ||||||||||    
T  2286593 gggtgtatgggtggtatgaaattatgagtggtctaccaatcatttt 2286638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 156 - 212
Target Start/End: Complemental strand, 4649537 - 4649481
Alignment:
Q  156 tgagtggtgatacatgcacattcataggtggcatacacacttaaacctccacataaa 212  Q
    |||||||||||| ||||| ||||||| |||||||||||| ||||| |||||||||||    
T  4649537 tgagtggtgatagatgcaaattcataagtggcatacacatttaaaactccacataaa 4649481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 291 - 338
Target Start/End: Original strand, 496816 - 496863
Alignment:
Q  291 gggggtgtatgggtggtatgaaaatatgagtggtctatcaatcatttt 338  Q
    ||||||||||| |||||||| |||||||||||||||| ||||||||||    
T  496816 gggggtgtatgagtggtatggaaatatgagtggtctaccaatcatttt 496863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 291 - 338
Target Start/End: Original strand, 11765840 - 11765887
Alignment:
Q  291 gggggtgtatgggtggtatgaaaatatgagtggtctatcaatcatttt 338  Q
    ||||||||||| |||||||| |||||||||||||||| ||||||||||    
T  11765840 gggggtgtatgagtggtatggaaatatgagtggtctaccaatcatttt 11765887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 156 - 224
Target Start/End: Complemental strand, 31427362 - 31427292
Alignment:
Q  156 tgagtggtgatacatgcacattcatag--gtggcatacacacttaaacctccacataaacatatgacatgt 224  Q
    ||||||||||||||||||||| |||||  |||||||||| | |||||||||| |||||| || ||||||||    
T  31427362 tgagtggtgatacatgcacatccataggtgtggcatacataattaaacctccgcataaatatgtgacatgt 31427292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 292 - 338
Target Start/End: Complemental strand, 42535180 - 42535134
Alignment:
Q  292 ggggtgtatgggtggtatgaaaatatgagtggtctatcaatcatttt 338  Q
    |||||||||| |||||||| |||||||||||||||| ||||||||||    
T  42535180 ggggtgtatgagtggtatggaaatatgagtggtctaccaatcatttt 42535134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 291 - 338
Target Start/End: Complemental strand, 7527230 - 7527183
Alignment:
Q  291 gggggtgtatgggtggtatgaaaatatgagtggtctatcaatcatttt 338  Q
    |||| ||||||||||||| |||| ||||||||||||| ||||||||||    
T  7527230 ggggctgtatgggtggtacgaaattatgagtggtctaccaatcatttt 7527183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 361 - 396
Target Start/End: Original strand, 12103200 - 12103235
Alignment:
Q  361 aggtataccaccataggtggcaatacaccttctacc 396  Q
    ||||||||||||||||||||||||||||||| ||||    
T  12103200 aggtataccaccataggtggcaatacaccttatacc 12103235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 59; Significance: 7e-25; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 162 - 248
Target Start/End: Complemental strand, 3780453 - 3780367
Alignment:
Q  162 gtgatacatgcacattcataggtggcatacacacttaaacctccacataaacatatgacatgtagcctaaaccccataaacactttg 248  Q
    |||||||||| |||| ||||||||||||||||||| ||||||||||| |||||| ||||||||||||||||||| | ||||||||||    
T  3780453 gtgatacatgtacatccataggtggcatacacactcaaacctccacacaaacatgtgacatgtagcctaaacccgagaaacactttg 3780367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 157 - 248
Target Start/End: Complemental strand, 4077043 - 4076952
Alignment:
Q  157 gagtggtgatacatgcacattcataggtggcatacacacttaaacctccacataaacatatgacatgtagcctaaaccccataaacactttg 248  Q
    ||||| ||||||||||| |  ||||||||||||||||||||||||||||||| |||||| |||||||||||||| |||||| ||||| ||||    
T  4077043 gagtgatgatacatgcatacccataggtggcatacacacttaaacctccacacaaacatgtgacatgtagcctagaccccacaaacaatttg 4076952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 292 - 338
Target Start/End: Complemental strand, 3780324 - 3780278
Alignment:
Q  292 ggggtgtatgggtggtatgaaaatatgagtggtctatcaatcatttt 338  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||    
T  3780324 ggggtgtatgggtggtatgaaaatatgagtggtctaccaatcatttt 3780278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 294 - 338
Target Start/End: Complemental strand, 4076907 - 4076863
Alignment:
Q  294 ggtgtatgggtggtatgaaaatatgagtggtctatcaatcatttt 338  Q
    |||||||||||||||||||| ||||||||||||| ||||||||||    
T  4076907 ggtgtatgggtggtatgaaattatgagtggtctaccaatcatttt 4076863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 57; Significance: 1e-23; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 160 - 248
Target Start/End: Original strand, 11828960 - 11829048
Alignment:
Q  160 tggtgatacatgcacattcataggtggcatacacacttaaacctccacataaacatatgacatgtagcctaaaccccataaacactttg 248  Q
    |||||| ||||||||| |||||||||||||||||||||||||||||||||||| || ||||||||  |||| |||||| ||||||||||    
T  11828960 tggtgagacatgcacactcataggtggcatacacacttaaacctccacataaatatgtgacatgtgtcctagaccccacaaacactttg 11829048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 157 - 248
Target Start/End: Original strand, 13922185 - 13922276
Alignment:
Q  157 gagtggtgatacatgcacattcataggtggcatacacacttaaacctccacataaacatatgacatgtagcctaaaccccataaacactttg 248  Q
    ||||||||||||||| |||| |||||||||||||||||||||||||||||| ||||||| ||||| ||  |||| |||||| ||||||||||    
T  13922185 gagtggtgatacatgtacatccataggtggcatacacacttaaacctccacgtaaacatgtgacacgtgtcctagaccccacaaacactttg 13922276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 282 - 338
Target Start/End: Original strand, 11829082 - 11829137
Alignment:
Q  282 aaatatgtggggggtgtatgggtggtatgaaaatatgagtggtctatcaatcatttt 338  Q
    |||||||||||| ||||||||||||||||||||||| ||||||||| ||||||||||    
T  11829082 aaatatgtgggg-gtgtatgggtggtatgaaaatataagtggtctaccaatcatttt 11829137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 291 - 338
Target Start/End: Original strand, 13922318 - 13922365
Alignment:
Q  291 gggggtgtatgggtggtatgaaaatatgagtggtctatcaatcatttt 338  Q
    ||||||||||| |||||||| |||||||||||||||| ||||||||||    
T  13922318 gggggtgtatgagtggtatggaaatatgagtggtctaccaatcatttt 13922365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 54; Significance: 7e-22; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 151 - 248
Target Start/End: Original strand, 47940820 - 47940917
Alignment:
Q  151 aattttgagtggtgatacatgcacattcataggtggcatacacacttaaacctccacataaacatatgacatgtagcctaaaccccataaacactttg 248  Q
    |||| ||||| ||||||||||||||   || ||||||||||||||||||||||||||| |||||| |||||||| ||||| |||||| ||||||||||    
T  47940820 aattatgagtagtgatacatgcacacctattggtggcatacacacttaaacctccacacaaacatgtgacatgtggcctagaccccacaaacactttg 47940917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 156 - 248
Target Start/End: Original strand, 49786392 - 49786484
Alignment:
Q  156 tgagtggtgatacatgcacattcataggtggcatacacacttaaacctccacataaacatatgacatgtagcctaaaccccataaacactttg 248  Q
    |||| ||||||||||| |||  |||||||||||||||||||||||||||||||||||||| ||||| ||  |||| |||||| ||||||||||    
T  49786392 tgagcggtgatacatgtacacccataggtggcatacacacttaaacctccacataaacatgtgacacgtgtcctagaccccacaaacactttg 49786484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 157 - 208
Target Start/End: Complemental strand, 29836868 - 29836817
Alignment:
Q  157 gagtggtgatacatgcacattcataggtggcatacacacttaaacctccaca 208  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  29836868 gagtggtgatacatgcacactcataggtggcatacacacttaaacctccaca 29836817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 157 - 248
Target Start/End: Original strand, 8152977 - 8153070
Alignment:
Q  157 gagtggtgatacat--gcacattcataggtggcatacacacttaaacctccacataaacatatgacatgtagcctaaaccccataaacactttg 248  Q
    ||||||||||||||  |||||   ||||||||||||||||| ||||||||||||||||||| |||||||| ||||| || ||| ||||||||||    
T  8152977 gagtggtgatacatatgcacacctataggtggcatacacacctaaacctccacataaacatgtgacatgtggcctagactccacaaacactttg 8153070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 282 - 340
Target Start/End: Original strand, 49786518 - 49786575
Alignment:
Q  282 aaatatgtggggggtgtatgggtggtatgaaaatatgagtggtctatcaatcatttttc 340  Q
    |||||||||||| ||||||| ||||||||||||||||||||||||| ||||||||||||    
T  49786518 aaatatgtgggg-gtgtatgagtggtatgaaaatatgagtggtctaccaatcatttttc 49786575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 157 - 248
Target Start/End: Complemental strand, 8436995 - 8436904
Alignment:
Q  157 gagtggtgatacatgcacattcataggtggcatacacacttaaacctccacataaacatatgacatgtagcctaaaccccataaacactttg 248  Q
    ||||||||||| ||| |||  ||||||||||||||||| ||||||||| ||||||| |||||||| ||  | || |||||| ||||||||||    
T  8436995 gagtggtgatatatgtacacccataggtggcatacacatttaaacctctacataaatatatgacacgtgtcttagaccccacaaacactttg 8436904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 163 - 247
Target Start/End: Complemental strand, 48779066 - 48778982
Alignment:
Q  163 tgatacatgcacattcataggtggcatacacacttaaacctccacataaacatatgacatgtagcctaaaccccataaacacttt 247  Q
    |||||||||||||   ||||||||||||| || |||||| |||||||||| || |||||||| | ||| || |||||||||||||    
T  48779066 tgatacatgcacacctataggtggcatactcatttaaacatccacataaatatgtgacatgtggtctagactccataaacacttt 48778982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 291 - 338
Target Start/End: Complemental strand, 8436862 - 8436815
Alignment:
Q  291 gggggtgtatgggtggtatgaaaatatgagtggtctatcaatcatttt 338  Q
    ||||||||||| |||||||| |||||||||||||||| ||||||||||    
T  8436862 gggggtgtatgagtggtatggaaatatgagtggtctaccaatcatttt 8436815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 359 - 396
Target Start/End: Complemental strand, 13823060 - 13823023
Alignment:
Q  359 ataggtataccaccataggtggcaatacaccttctacc 396  Q
    ||||||||||||||||||||||||||||||||| ||||    
T  13823060 ataggtataccaccataggtggcaatacaccttatacc 13823023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 291 - 327
Target Start/End: Original strand, 47940959 - 47940995
Alignment:
Q  291 gggggtgtatgggtggtatgaaaatatgagtggtcta 327  Q
    ||||||||||||||||||||||| |||||||||||||    
T  47940959 gggggtgtatgggtggtatgaaattatgagtggtcta 47940995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 52; Significance: 1e-20; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 157 - 248
Target Start/End: Complemental strand, 33594618 - 33594527
Alignment:
Q  157 gagtggtgatacatgcacattcataggtggcatacacacttaaacctccacataaacatatgacatgtagcctaaaccccataaacactttg 248  Q
    |||| ||||||||||||||| ||| |||||||||||||||||||||| |||| |||||| |||||||| ||||| |||||| ||| ||||||    
T  33594618 gagtagtgatacatgcacatccattggtggcatacacacttaaaccttcacacaaacatgtgacatgtggcctagaccccacaaatactttg 33594527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 291 - 338
Target Start/End: Complemental strand, 33594485 - 33594438
Alignment:
Q  291 gggggtgtatgggtggtatgaaaatatgagtggtctatcaatcatttt 338  Q
    ||||||||||||||||||||||| ||||||||||||| ||||||||||    
T  33594485 gggggtgtatgggtggtatgaaattatgagtggtctaccaatcatttt 33594438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 52; Significance: 1e-20; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 157 - 248
Target Start/End: Complemental strand, 20186940 - 20186849
Alignment:
Q  157 gagtggtgatacatgcacattcataggtggcatacacacttaaacctccacataaacatatgacatgtagcctaaaccccataaacactttg 248  Q
    ||||||||||||||| |||  |||||||||||||||||||||||||||||||||||||| ||||| ||  |||| | |||| ||||||||||    
T  20186940 gagtggtgatacatgtacacccataggtggcatacacacttaaacctccacataaacatgtgacacgtgtcctagatcccacaaacactttg 20186849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 157 - 248
Target Start/End: Original strand, 30339636 - 30339727
Alignment:
Q  157 gagtggtgatacatgcacattcataggtggcatacacacttaaacctccacataaacatatgacatgtagcctaaaccccataaacactttg 248  Q
    ||||||||||||||| |||  ||||||||||||||||||||||||||| |||||||||| ||||| ||  |||| |||||| ||||||||||    
T  30339636 gagtggtgatacatgtacacccataggtggcatacacacttaaacctctacataaacatgtgacacgtgtcctagaccccacaaacactttg 30339727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 157 - 248
Target Start/End: Original strand, 51787272 - 51787363
Alignment:
Q  157 gagtggtgatacatgcacattcataggtggcatacacacttaaacctccacataaacatatgacatgtagcctaaaccccataaacactttg 248  Q
    ||||||||||||||| |||| |||||||||||||||||||||||||| ||||||||||| ||||| ||   ||| |||||| ||||||||||    
T  51787272 gagtggtgatacatgtacatccataggtggcatacacacttaaaccttcacataaacatgtgacacgtgctctagaccccacaaacactttg 51787363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 157 - 248
Target Start/End: Complemental strand, 43740506 - 43740415
Alignment:
Q  157 gagtggtgatacatgcacattcataggtggcatacacacttaaacctccacataaacatatgacatgtagcctaaaccccataaacactttg 248  Q
    |||||||||| |||| |||| ||||| |  ||| |||||||||||||||||| |||||| ||| |||| ||||||||| || ||||||||||    
T  43740506 gagtggtgatccatgaacatccatagatcacatgcacacttaaacctccacacaaacatgtgatatgtggcctaaacctcacaaacactttg 43740415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 179 - 221
Target Start/End: Complemental strand, 9673046 - 9673004
Alignment:
Q  179 ataggtggcatacacacttaaacctccacataaacatatgaca 221  Q
    ||||||||||||||||||||||||||||||||||||| |||||    
T  9673046 ataggtggcatacacacttaaacctccacataaacatgtgaca 9673004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 282 - 340
Target Start/End: Complemental strand, 20186815 - 20186758
Alignment:
Q  282 aaatatgtggggggtgtatgggtggtatgaaaatatgagtggtctatcaatcatttttc 340  Q
    ||||||||||||| |||||| |||||||| |||||||||||||||| ||||||||||||    
T  20186815 aaatatgtggggg-tgtatgagtggtatggaaatatgagtggtctaccaatcatttttc 20186758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 291 - 338
Target Start/End: Complemental strand, 9672938 - 9672891
Alignment:
Q  291 gggggtgtatgggtggtatgaaaatatgagtggtctatcaatcatttt 338  Q
    ||||||||||| |||||||| |||||||||||||||| ||||||||||    
T  9672938 gggggtgtatgagtggtatggaaatatgagtggtctaccaatcatttt 9672891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 292 - 338
Target Start/End: Original strand, 51787405 - 51787451
Alignment:
Q  292 ggggtgtatgggtggtatgaaaatatgagtggtctatcaatcatttt 338  Q
    |||||||||| |||||||| |||||||||||||||| ||||||||||    
T  51787405 ggggtgtatgagtggtatggaaatatgagtggtctaccaatcatttt 51787451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 293 - 338
Target Start/End: Original strand, 30339771 - 30339816
Alignment:
Q  293 gggtgtatgggtggtatgaaaatatgagtggtctatcaatcatttt 338  Q
    ||||||||| ||||||| ||||||||||||||||| ||||||||||    
T  30339771 gggtgtatgagtggtataaaaatatgagtggtctaccaatcatttt 30339816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 359 - 396
Target Start/End: Original strand, 17224166 - 17224203
Alignment:
Q  359 ataggtataccaccataggtggcaatacaccttctacc 396  Q
    |||||| |||||||||||||||||||||||||| ||||    
T  17224166 ataggtgtaccaccataggtggcaatacaccttatacc 17224203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 359 - 396
Target Start/End: Original strand, 25871704 - 25871741
Alignment:
Q  359 ataggtataccaccataggtggcaatacaccttctacc 396  Q
    |||||| |||||||||||||||||||||||||| ||||    
T  25871704 ataggtgtaccaccataggtggcaatacaccttatacc 25871741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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