View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17889_high_4 (Length: 296)
Name: NF17889_high_4
Description: NF17889
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17889_high_4 |
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Alignment Details
Target: chr2 (Bit Score: 259; Significance: 1e-144; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 1 - 279
Target Start/End: Complemental strand, 41496959 - 41496681
Alignment:
| Q |
1 |
aaagcttaaagtgaattaatgtaaagtcaggaaatggttggtgtgcttatgcactcatctcatttcctacctaataagttgattaagtatattgctaaaa |
100 |
Q |
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| T |
41496959 |
aaagcttaaagtgaattaatgtaaagtcaggaaatggttggtgtgcttatgcactcatctcatttcctacctaataagttgattaagtatattgctaaaa |
41496860 |
T |
|
| Q |
101 |
attgtagttttgtctaatgtgcacaaatttatttttgatcatacgattaataaattatatcatatcacatttgattcaattataaaacgaattaatatgt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||| |
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| T |
41496859 |
attgtagttttgtctaatgtgcacaaatttatttttgatcatacgattaataaattacatcatatcacatttgattcaattataaaacgaactaatatgt |
41496760 |
T |
|
| Q |
201 |
aaaaataaacttatacattatgtcagatttgtctcatctgtataccatataattggccaaagactgtattggtactact |
279 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
41496759 |
aaaaataaacttatacattatgcaagatttgtctcatctgtataccatataactggccaaagactgtattggtactact |
41496681 |
T |
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