View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17889_low_1 (Length: 649)

Name: NF17889_low_1
Description: NF17889
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17889_low_1
NF17889_low_1
[»] chr8 (10 HSPs)
chr8 (135-507)||(6580461-6580837)
chr8 (344-591)||(6616348-6616590)
chr8 (348-532)||(6757681-6757861)
chr8 (348-532)||(6659686-6659866)
chr8 (348-532)||(6740088-6740268)
chr8 (15-140)||(6581019-6581144)
chr8 (15-63)||(6612385-6612433)
chr8 (270-324)||(35793178-35793232)
chr8 (289-328)||(5945357-5945396)
chr8 (270-324)||(22786554-22786608)
[»] scaffold0470 (2 HSPs)
scaffold0470 (344-591)||(5634-5876)
scaffold0470 (15-63)||(1673-1721)
[»] chr4 (2 HSPs)
chr4 (274-324)||(9116266-9116316)
chr4 (274-328)||(40202280-40202334)
[»] chr3 (5 HSPs)
chr3 (274-324)||(39994200-39994250)
chr3 (274-324)||(4037150-4037200)
chr3 (274-324)||(10688617-10688667)
chr3 (274-324)||(11233515-11233565)
chr3 (274-324)||(49279498-49279548)
[»] chr7 (5 HSPs)
chr7 (274-325)||(36436058-36436109)
chr7 (274-324)||(16876748-16876798)
chr7 (274-324)||(18867959-18868009)
chr7 (274-324)||(23185934-23185984)
chr7 (274-324)||(46425349-46425399)
[»] chr6 (3 HSPs)
chr6 (274-324)||(6139327-6139377)
chr6 (274-324)||(7506641-7506691)
chr6 (274-324)||(9928270-9928320)
[»] chr2 (4 HSPs)
chr2 (274-324)||(3496810-3496860)
chr2 (274-324)||(11226155-11226205)
chr2 (274-324)||(15141889-15141939)
chr2 (274-324)||(19037078-19037128)
[»] chr1 (5 HSPs)
chr1 (270-324)||(26478571-26478625)
chr1 (274-324)||(27032331-27032381)
chr1 (274-324)||(27907712-27907762)
chr1 (274-324)||(51748561-51748611)
chr1 (274-323)||(24671166-24671215)


Alignment Details
Target: chr8 (Bit Score: 271; Significance: 1e-151; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 135 - 507
Target Start/End: Complemental strand, 6580837 - 6580461
Alignment:
Q  135 aacctagaaaacaagagtgacaga--ccacaaaggacaaaaacattaacaccatgttgtgagaaaaataga--ataaaaagaatctcattttggttatca 230  Q
    |||||| |||||||||||||||||  |||  |||||||||| |||| ||||||||||||||||||||||||  ||||||||||||||||||||| |||||    
T  6580837 aacctaaaaaacaagagtgacagagaccaggaaggacaaaagcattgacaccatgttgtgagaaaaatagagaataaaaagaatctcattttggctatca 6580738  T
Q  231 tcgacttttgatgtattggtgcctcaagtgtattttagtaataattaaaataaatcaattaaatgagagagaatgagtagttaaaagagagatatgaaat 330  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||    
T  6580737 tctacttttgatgtattggtgcctcaagtgtattttagtaataattaaaataaatcaattatatgagagagaatgagtagttaaaagagaaatatgaaat 6580638  T
Q  331 gatacatttgttgcttgtcaagcactaaggattgaaatgttgcttgaagaattgaagattactgagattgcttgaatgaaacttcttgttgacaattgat 430  Q
    ||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| | | |||||||||    
T  6580637 gatacatttgttgcttgtcaagcactatggattaaaatgttgcttgaagaattgaagattactgagattgcttgaatgaaacttctcgctaacaattgat 6580538  T
Q  431 ttagcaaattatcaattaaccatggaagaagtaagcatgttgagatgagatttcacttactaagatataaagttaac 507  Q
    |||| |||||||||||||||||||||| ||| ||||||||||| | |||||||| |||||||||| |||||||||||    
T  6580537 ttagaaaattatcaattaaccatggaaaaagcaagcatgttgaaaggagatttcgcttactaagagataaagttaac 6580461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 344 - 591
Target Start/End: Complemental strand, 6616590 - 6616348
Alignment:
Q  344 cttgtcaagcactaaggattgaaatgttgcttgaagaattgaagattactgagattgcttgaatgaaacttcttgttgacaattgatttagcaaattatc 443  Q
    |||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||| |||||||||||||||    
T  6616590 cttgtcaagcactatggattgaaatgttgcttgaagaattgaatattactgagattgcttgaatgaaacttcttgttaacaattcatttagcaaattatc 6616491  T
Q  444 aattaaccatggaagaagtaagcatgttgagatgagatttcacttactaagatataaagttaacgtaacaaagatagtttggaactttattattgcaaaa 543  Q
    |||||||||||||| ||| ||||||||||| | ||||||||||||||||||| |||||||     |||||||||||||||||||||||||||||||||||    
T  6616490 aattaaccatggaaaaagcaagcatgttgaaaggagatttcacttactaagagataaagt-----taacaaagatagtttggaactttattattgcaaaa 6616396  T
Q  544 ctgaactgcaattgacaaacattcaaataaaacccttgaagaaggcaa 591  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  6616395 ctgaactgcaattgacaaacattcaaataaaacccttgaagaaggcaa 6616348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 348 - 532
Target Start/End: Complemental strand, 6757861 - 6757681
Alignment:
Q  348 tcaagcactaaggattgaaatgtt-gcttgaagaattgaagattactgagattgcttgaatgaaacttcttgttgacaattgatttagcaaattatcaat 446  Q
    |||||||||| ||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||| ||||    
T  6757861 tcaagcactatggattgaaatgtttgcttgaagaattgaagattattgagattgcttgaatgaaacttctttttgacaattgatttagcaaattagcaat 6757762  T
Q  447 taaccatggaagaagtaagcatgttgagatgagatttcacttactaagatataaagttaacgtaacaaagatagtttggaacttta 532  Q
    ||||||||||||||| ||||||||||| | |||||||||||| |||||| || ||||     ||||||||||||||| ||||||||    
T  6757761 taaccatggaagaagcaagcatgttgaaaggagatttcacttcctaagagatcaagt-----taacaaagatagtttcgaacttta 6757681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 348 - 532
Target Start/End: Complemental strand, 6659866 - 6659686
Alignment:
Q  348 tcaagcactaaggattgaaatgttgcttgaagaattgaagattactgagattgcttgaatgaaacttcttgttgacaattgatttagcaaatta-tcaat 446  Q
    ||||| |||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  6659866 tcaagtactatggattgaaatgttgcttgaagaattgaagattattgagattgcttgaatgaaacttcttgttgacaattgatttagcaaattactcaat 6659767  T
Q  447 taaccatggaagaagtaagcatgttgagatgagatttcacttactaagatataaagttaacgtaacaaagatagtttggaacttta 532  Q
    ||||||||||||||| ||||||||||| |  |||||| |||| ||| || || ||||     ||||||||||||||| ||||||||    
T  6659766 taaccatggaagaagcaagcatgttgaaagtagatttgacttcctacgagatcaagt-----taacaaagatagtttcgaacttta 6659686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 348 - 532
Target Start/End: Complemental strand, 6740268 - 6740088
Alignment:
Q  348 tcaagcactaaggattgaaatgttgcttgaagaattgaagattactgagattgcttgaatgaaacttcttgttgacaattgatttagcaaatta-tcaat 446  Q
    ||||| |||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  6740268 tcaagtactatggattgaaatgttgcttgaagaattgaagattattgagattgcttgaatgaaacttcttgttgacaattgatttagcaaattactcaat 6740169  T
Q  447 taaccatggaagaagtaagcatgttgagatgagatttcacttactaagatataaagttaacgtaacaaagatagtttggaacttta 532  Q
    ||||||||||||||| ||||||||||| |  |||||| |||| ||| || || ||||     ||||||||||||||| ||||||||    
T  6740168 taaccatggaagaagcaagcatgttgaaagtagatttgacttcctacgagatcaagt-----taacaaagatagtttcgaacttta 6740088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 15 - 140
Target Start/End: Complemental strand, 6581144 - 6581019
Alignment:
Q  15 agagaggaggggataaggagagaaatatgaggcatatatagtagacgtataaaagaaccgacatcgtagatgttttaaggaaagagacacaagggaccac 114  Q
    |||||||||||||||||||||||||||||| ||||||||| |||| ||||||||||||| |||||| |||| ||||||||||||||| ||||||||||||    
T  6581144 agagaggaggggataaggagagaaatatgaagcatatataatagatgtataaaagaacccacatcgaagattttttaaggaaagagatacaagggaccac 6581045  T
Q  115 aacttcaactctttcacttaaaccta 140  Q
    ||||||||||||||||  ||||||||    
T  6581044 aacttcaactctttcaagtaaaccta 6581019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 15 - 63
Target Start/End: Complemental strand, 6612433 - 6612385
Alignment:
Q  15 agagaggaggggataaggagagaaatatgaggcatatatagtagacgta 63  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  6612433 agagaggaggggataaggagagaaatatgaggcatatatagtagacgta 6612385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 270 - 324
Target Start/End: Complemental strand, 35793232 - 35793178
Alignment:
Q  270 aataattaaaataaatcaattaaatgagagagaatgagtagttaaaagagagata 324  Q
    |||||||||||||||| | |||||||||||| ||||||||||||| |||||||||    
T  35793232 aataattaaaataaattatttaaatgagagataatgagtagttaagagagagata 35793178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 289 - 328
Target Start/End: Original strand, 5945357 - 5945396
Alignment:
Q  289 ttaaatgagagagaatgagtagttaaaagagagatatgaa 328  Q
    |||||||||||||||||| |||||||||||||||||||||    
T  5945357 ttaaatgagagagaatgattagttaaaagagagatatgaa 5945396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 270 - 324
Target Start/End: Complemental strand, 22786608 - 22786554
Alignment:
Q  270 aataattaaaataaatcaattaaatgagagagaatgagtagttaaaagagagata 324  Q
    |||||||||| ||||| | |||||||| ||||||||| | |||||||||||||||    
T  22786608 aataattaaagtaaattatttaaatgaaagagaatgaatggttaaaagagagata 22786554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0470 (Bit Score: 192; Significance: 1e-104; HSPs: 2)
Name: scaffold0470
Description:

Target: scaffold0470; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 344 - 591
Target Start/End: Complemental strand, 5876 - 5634
Alignment:
Q  344 cttgtcaagcactaaggattgaaatgttgcttgaagaattgaagattactgagattgcttgaatgaaacttcttgttgacaattgatttagcaaattatc 443  Q
    |||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||| |||||||||||||||    
T  5876 cttgtcaagcactatggattgaaatgttgcttgaagaattgaatattactgagattgcttgaatgaaacttcttgttaacaattcatttagcaaattatc 5777  T
Q  444 aattaaccatggaagaagtaagcatgttgagatgagatttcacttactaagatataaagttaacgtaacaaagatagtttggaactttattattgcaaaa 543  Q
    |||||||||||||| ||| ||||||||||| | ||||||||||||||||||| |||||||     |||||||||||||||||||||||||||||||||||    
T  5776 aattaaccatggaaaaagcaagcatgttgaaaggagatttcacttactaagagataaagt-----taacaaagatagtttggaactttattattgcaaaa 5682  T
Q  544 ctgaactgcaattgacaaacattcaaataaaacccttgaagaaggcaa 591  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  5681 ctgaactgcaattgacaaacattcaaataaaacccttgaagaaggcaa 5634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0470; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 15 - 63
Target Start/End: Complemental strand, 1721 - 1673
Alignment:
Q  15 agagaggaggggataaggagagaaatatgaggcatatatagtagacgta 63  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  1721 agagaggaggggataaggagagaaatatgaggcatatatagtagacgta 1673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 274 - 324
Target Start/End: Original strand, 9116266 - 9116316
Alignment:
Q  274 attaaaataaatcaattaaatgagagagaatgagtagttaaaagagagata 324  Q
    |||||||||||| | |||||||||||||||||||| ||||||| |||||||    
T  9116266 attaaaataaattatttaaatgagagagaatgagttgttaaaaaagagata 9116316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 274 - 328
Target Start/End: Original strand, 40202280 - 40202334
Alignment:
Q  274 attaaaataaatcaattaaatgagagagaatgagtagttaaaagagagatatgaa 328  Q
    |||||||||||| | ||| |||| ||||||||||| ||||||||||| |||||||    
T  40202280 attaaaataaattatttagatgaaagagaatgagtggttaaaagagacatatgaa 40202334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 274 - 324
Target Start/End: Complemental strand, 39994250 - 39994200
Alignment:
Q  274 attaaaataaatcaattaaatgagagagaatgagtagttaaaagagagata 324  Q
    |||||||||||| | ||| |||||||||||||||| |||||||||||||||    
T  39994250 attaaaataaattatttagatgagagagaatgagttgttaaaagagagata 39994200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 274 - 324
Target Start/End: Complemental strand, 4037200 - 4037150
Alignment:
Q  274 attaaaataaatcaattaaatgagagagaatgagtagttaaaagagagata 324  Q
    |||||||||||| | ||| |||||||||||||||| ||||| |||||||||    
T  4037200 attaaaataaattatttagatgagagagaatgagttgttaagagagagata 4037150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 274 - 324
Target Start/End: Complemental strand, 10688667 - 10688617
Alignment:
Q  274 attaaaataaatcaattaaatgagagagaatgagtagttaaaagagagata 324  Q
    |||||||||||| | ||| |||||||||||||||| ||||| |||||||||    
T  10688667 attaaaataaattatttagatgagagagaatgagttgttaagagagagata 10688617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 274 - 324
Target Start/End: Complemental strand, 11233565 - 11233515
Alignment:
Q  274 attaaaataaatcaattaaatgagagagaatgagtagttaaaagagagata 324  Q
    |||||||||||| | ||| |||||||||||||||| ||||| |||||||||    
T  11233565 attaaaataaattatttagatgagagagaatgagttgttaagagagagata 11233515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 274 - 324
Target Start/End: Complemental strand, 49279548 - 49279498
Alignment:
Q  274 attaaaataaatcaattaaatgagagagaatgagtagttaaaagagagata 324  Q
    |||||||||||| | ||| |||||||||||||||| ||||| |||||||||    
T  49279548 attaaaataaattatttagatgagagagaatgagttgttaagagagagata 49279498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 274 - 325
Target Start/End: Original strand, 36436058 - 36436109
Alignment:
Q  274 attaaaataaatcaattaaatgagagagaatgagtagttaaaagagagatat 325  Q
    |||||||||||||| ||  |||||||||||||| |||||| |||||||||||    
T  36436058 attaaaataaatcattttgatgagagagaatgattagttagaagagagatat 36436109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 274 - 324
Target Start/End: Original strand, 16876748 - 16876798
Alignment:
Q  274 attaaaataaatcaattaaatgagagagaatgagtagttaaaagagagata 324  Q
    |||||||||||| | ||| |||||||||||||||| ||||| |||||||||    
T  16876748 attaaaataaattatttagatgagagagaatgagttgttaagagagagata 16876798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 274 - 324
Target Start/End: Original strand, 18867959 - 18868009
Alignment:
Q  274 attaaaataaatcaattaaatgagagagaatgagtagttaaaagagagata 324  Q
    |||||||||||| | ||| |||||||||||||||| ||||| |||||||||    
T  18867959 attaaaataaattatttagatgagagagaatgagttgttaagagagagata 18868009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 274 - 324
Target Start/End: Original strand, 23185934 - 23185984
Alignment:
Q  274 attaaaataaatcaattaaatgagagagaatgagtagttaaaagagagata 324  Q
    |||||||||||| | ||| |||||||||||||||| ||||| |||||||||    
T  23185934 attaaaataaattatttagatgagagagaatgagttgttaagagagagata 23185984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 274 - 324
Target Start/End: Original strand, 46425349 - 46425399
Alignment:
Q  274 attaaaataaatcaattaaatgagagagaatgagtagttaaaagagagata 324  Q
    |||||||||||| | ||| |||||||||||||||| ||||| |||||||||    
T  46425349 attaaaataaattatttagatgagagagaatgagttgttaagagagagata 46425399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000006; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 274 - 324
Target Start/End: Complemental strand, 6139377 - 6139327
Alignment:
Q  274 attaaaataaatcaattaaatgagagagaatgagtagttaaaagagagata 324  Q
    |||||||||||| | ||| |||||||||||||| | |||||||||||||||    
T  6139377 attaaaataaattatttagatgagagagaatgaatggttaaaagagagata 6139327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 274 - 324
Target Start/End: Complemental strand, 7506691 - 7506641
Alignment:
Q  274 attaaaataaatcaattaaatgagagagaatgagtagttaaaagagagata 324  Q
    |||||||||||| | ||| |||||||||||||||| ||||| |||||||||    
T  7506691 attaaaataaattatttagatgagagagaatgagttgttaagagagagata 7506641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 274 - 324
Target Start/End: Complemental strand, 9928320 - 9928270
Alignment:
Q  274 attaaaataaatcaattaaatgagagagaatgagtagttaaaagagagata 324  Q
    |||||||||||| | ||| |||||||||||||||| ||||| |||||||||    
T  9928320 attaaaataaattatttagatgagagagaatgagttgttaagagagagata 9928270  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000006; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 274 - 324
Target Start/End: Original strand, 3496810 - 3496860
Alignment:
Q  274 attaaaataaatcaattaaatgagagagaatgagtagttaaaagagagata 324  Q
    |||||||||||| | ||| |||||||||||||||| ||||| |||||||||    
T  3496810 attaaaataaattatttagatgagagagaatgagttgttaagagagagata 3496860  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 274 - 324
Target Start/End: Complemental strand, 11226205 - 11226155
Alignment:
Q  274 attaaaataaatcaattaaatgagagagaatgagtagttaaaagagagata 324  Q
    |||||||||||| | ||| |||||||||||||||| ||||| |||||||||    
T  11226205 attaaaataaattatttagatgagagagaatgagttgttaagagagagata 11226155  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 274 - 324
Target Start/End: Complemental strand, 15141939 - 15141889
Alignment:
Q  274 attaaaataaatcaattaaatgagagagaatgagtagttaaaagagagata 324  Q
    |||||||||||| | ||| |||||||||||| ||| |||||||||||||||    
T  15141939 attaaaataaattatttagatgagagagaataagttgttaaaagagagata 15141889  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 274 - 324
Target Start/End: Original strand, 19037078 - 19037128
Alignment:
Q  274 attaaaataaatcaattaaatgagagagaatgagtagttaaaagagagata 324  Q
    |||||||||||| | ||| |||||||||||||||| ||||| |||||||||    
T  19037078 attaaaataaattatttagatgagagagaatgagttgttaagagagagata 19037128  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000006; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 270 - 324
Target Start/End: Complemental strand, 26478625 - 26478571
Alignment:
Q  270 aataattaaaataaatcaattaaatgagagagaatgagtagttaaaagagagata 324  Q
    |||||||||||||||||| |||||||| ||| ||||| | ||||||||| |||||    
T  26478625 aataattaaaataaatcatttaaatgaaagataatgaattgttaaaagaaagata 26478571  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 274 - 324
Target Start/End: Original strand, 27032331 - 27032381
Alignment:
Q  274 attaaaataaatcaattaaatgagagagaatgagtagttaaaagagagata 324  Q
    |||||||||||| | ||| |||||||||||||||| ||||| |||||||||    
T  27032331 attaaaataaattatttagatgagagagaatgagttgttaagagagagata 27032381  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 274 - 324
Target Start/End: Complemental strand, 27907762 - 27907712
Alignment:
Q  274 attaaaataaatcaattaaatgagagagaatgagtagttaaaagagagata 324  Q
    |||||||||||| | ||| |||||||||||||||| ||||| |||||||||    
T  27907762 attaaaataaattatttagatgagagagaatgagttgttaagagagagata 27907712  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 274 - 324
Target Start/End: Complemental strand, 51748611 - 51748561
Alignment:
Q  274 attaaaataaatcaattaaatgagagagaatgagtagttaaaagagagata 324  Q
    |||||||||||| | ||| |||||||||||||||| ||||||||| |||||    
T  51748611 attaaaataaattatttagatgagagagaatgagttgttaaaagaaagata 51748561  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 274 - 323
Target Start/End: Complemental strand, 24671215 - 24671166
Alignment:
Q  274 attaaaataaatcaattaaatgagagagaatgagtagttaaaagagagat 323  Q
    |||||||||||| | |||||||||||||||||||| ||||| ||| ||||    
T  24671215 attaaaataaattatttaaatgagagagaatgagtggttaagagaaagat 24671166  T

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