View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17889_low_2 (Length: 627)
Name: NF17889_low_2
Description: NF17889
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17889_low_2 |
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| [»] scaffold0793 (3 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 323; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 262 - 612
Target Start/End: Complemental strand, 714744 - 714394
Alignment:
| Q |
262 |
gttgatgatttacaactcaatacatcaacacatgattagcttcaaattacccaagacaattgatcaaattacataagctaaggacaaaatggtgtcaaag |
361 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
714744 |
gttgatgatttacaactcaatacatcaacacatgattagcttcaaattacccaagacaattgatcaaattacataagctaaggacaaaatggtgtcaaag |
714645 |
T |
|
| Q |
362 |
cgatgattgcattagtttgacattgaccatttatgtttggaatgnnnnnnnngtcagtatttgattattagttagacattgcttgggtagtcagtcattc |
461 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
714644 |
cgatgattgcattagtttgacattgaccatttatgtttggaatgttttttttgtcagtatttgattattagttagacattggttgggtagtcagtcattc |
714545 |
T |
|
| Q |
462 |
agtgaaccctttatagttgttttattacgacttattattttattcgcttgatggtttctgtgataaaatacattattatccatatacaattatacattca |
561 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
714544 |
agtgaaccctttatagttgttttattacgacttattattttattcgcttgatggtttctgtgataaaatacattattatccatatacaattatacattca |
714445 |
T |
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| Q |
562 |
aacagattaataattgtaacttgaattttattgcattgataatgaacaaag |
612 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
714444 |
aacagattaataattgtaacttgaattttattgcattgataatgaacaaag |
714394 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 193; E-Value: 1e-104
Query Start/End: Original strand, 14 - 261
Target Start/End: Complemental strand, 715030 - 714774
Alignment:
| Q |
14 |
atcagggttattgtaattagacgcaaattttgctgcgtgtatgataatctagtgatcatagatggtgtaggaatttggnnnnnnngatatacaagatgta |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
715030 |
atcagggttattgtaattagacgcaaattttgctgcgtgtatgataatctagtgatcatagatggtgtaggaatttggtttttt-gatatacaagatgta |
714932 |
T |
|
| Q |
114 |
aatataaaatgatgagtagaatctctttagaaactaagacgtgattttgagtgactaaaattataagttgtaaattgtcact----------tagtctac |
203 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
714931 |
aatataaaatgatgagtagaatctctttagaaactaagacgtgattttgagtgactaaaattataagttgtaaattgtcactcaaaataatatagtctac |
714832 |
T |
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| Q |
204 |
agacaactttcatgcattggctagaaactttataggattgtatgagtacttgtctagt |
261 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
714831 |
agacaactttcatgcattggctagaaactttataggattgtatgagtactagtctagt |
714774 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 163; E-Value: 1e-86
Query Start/End: Original strand, 9 - 226
Target Start/End: Complemental strand, 752360 - 752134
Alignment:
| Q |
9 |
acatcatcagggttattgtaattagacgcaaattttgctgcgtgtatgataatctagtgatcatagatggtgtaggaatttggnnnnnnngatatacaag |
108 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
752360 |
acatgatcagggttattgtaattagacgcaaattttgctgcgtgtatgataatctagtgatcatagatggtgtaggaatttggtttttt-gatatacaag |
752262 |
T |
|
| Q |
109 |
atgtaaatataaaatgatgagtagaatctctttagaaactaagacgtgattttgagtgactaaaattataagttgtaaattgtcact----------tag |
198 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
752261 |
atgtaaatataaaatgatgagtagaatctctttagaaactaagacgtgattttgagtgactaaaattataagttgtaaattgtcactcaaaataatatag |
752162 |
T |
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| Q |
199 |
tctacagacaactttcatgcattggcta |
226 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
752161 |
tctacagacaactttcatgcattggcta |
752134 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 9 - 82
Target Start/End: Original strand, 730953 - 731026
Alignment:
| Q |
9 |
acatcatcagggttattgtaattagacgcaaattttgctgcgtgtatgataatctagtgatcatagatggtgta |
82 |
Q |
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|||| ||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||| |
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| T |
730953 |
acatgatcagggttattgtaattagacgcaaattttgcatggtgtatgataatctaatgatcatagatggtgta |
731026 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 235; Significance: 1e-129; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 235; E-Value: 1e-129
Query Start/End: Original strand, 262 - 591
Target Start/End: Complemental strand, 3765420 - 3765086
Alignment:
| Q |
262 |
gttgatgatttacaactcaatacatcaacacatgattagcttcaaattacccaagacaattgatcaaattacataagctaaggacaaaatggtgtcaaag |
361 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| || |||||||||||||||||||||||||||||||||||| |
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| T |
3765420 |
gttgatgatttacaactcaatacatcaacacatgattagcttcaaactacccaagacaatagaacaaattacataagctaaggacaaaatggtgtcaaag |
3765321 |
T |
|
| Q |
362 |
cgatgattgcattagtttgacattgaccatttatgtttggaatgnnnnnnnn-----gtcagtatttgattattagttagacattgcttgggtagtcagt |
456 |
Q |
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|||||||||||| ||||||||||||| ||||||| ||||||||| |||||||||| |||||||||||||||||| ||||||||||||| |
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| T |
3765320 |
cgatgattgcatgagtttgacattgatcatttatttttggaatgtttttttttttttgtcagtatttaattattagttagacattggttgggtagtcagt |
3765221 |
T |
|
| Q |
457 |
cattcagtgaaccctttatagttgttttattacgacttattattttattcgcttgatggtttctgtgataaaatacattattatccatatacaattatac |
556 |
Q |
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|||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||| | |
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| T |
3765220 |
cattcagtgaaccccttatagctgttttattacgacttattattttattcgcttgatggtttatgtgataaaatacattattattcatatacaattattc |
3765121 |
T |
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| Q |
557 |
attcaaacagattaataattgtaacttgaatttta |
591 |
Q |
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|||||||||||||||||||||||||||||| |||| |
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| T |
3765120 |
attcaaacagattaataattgtaacttgaacttta |
3765086 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0793 (Bit Score: 173; Significance: 1e-92; HSPs: 3)
Name: scaffold0793
Description:
Target: scaffold0793; HSP #1
Raw Score: 173; E-Value: 1e-92
Query Start/End: Original strand, 14 - 249
Target Start/End: Complemental strand, 4306 - 4062
Alignment:
| Q |
14 |
atcagggttattgtaattagacgcaaattttgctgcgtgtatgataatctagtgatcatagatggtgtaggaatttggnnnnnnngatatacaagatgta |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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|
| T |
4306 |
atcagggttattgtaattagacgcaaattttgctgcgtgtatgataatctagtgatcatagatggtgtaggaatttggtttttt-gatatacaagatgta |
4208 |
T |
|
| Q |
114 |
aatataaaatgatgagtagaatctctttagaaactaagacgtgattttgagtgactaaaattataagttgtaaattgtcact----------tagtctac |
203 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
4207 |
aatataaaatgatgagtagaatctctttagaaactaagacgtgattttgagtgactaaaattataagttgtaaattgtcactcaaaataatatagtctac |
4108 |
T |
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| Q |
204 |
agacaactttcatgcattggctagaaactttataggattgtatgag |
249 |
Q |
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|||||||||||||||||||||||||||||| | ||||||| ||||| |
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| T |
4107 |
agacaactttcatgcattggctagaaacttgagaggattggatgag |
4062 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0793; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 9 - 69
Target Start/End: Complemental strand, 2992 - 2932
Alignment:
| Q |
9 |
acatcatcagggttattgtaattagacgcaaattttgctgcgtgtatgataatctagtgat |
69 |
Q |
| |
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|||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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|
| T |
2992 |
acatgatcagggttattgtaattagacgcaaattttgcatggtgtatgataatctagtgat |
2932 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0793; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 262 - 350
Target Start/End: Complemental strand, 4020 - 3932
Alignment:
| Q |
262 |
gttgatgatttacaactcaatacatcaacacatgattagcttcaaattacccaagacaattgatcaaattacataagctaaggacaaaa |
350 |
Q |
| |
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||||| |||||||||| ||| ||| ||||||| ||| |||| ||||| ||||||||||| ||| |||| ||| |||| |||||||||| |
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| T |
4020 |
gttgaagatttacaacgcaagacagcaacacaggatgagctgcaaatgacccaagacaagtgagcaaaggacagaagcgaaggacaaaa |
3932 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 262 - 292
Target Start/End: Complemental strand, 802019 - 801989
Alignment:
| Q |
262 |
gttgatgatttacaactcaatacatcaacac |
292 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
802019 |
gttgatgatttacaactcaatacatcaacac |
801989 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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