View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17889_low_3 (Length: 453)
Name: NF17889_low_3
Description: NF17889
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17889_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 414; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 414; E-Value: 0
Query Start/End: Original strand, 13 - 438
Target Start/End: Complemental strand, 42021221 - 42020796
Alignment:
| Q |
13 |
tcatcatacttagcatcagaaagatcccataaaactttgacttcaaaattttgatattgaaacgtatcagtacctttgttctgtttcaataacagaggag |
112 |
Q |
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| T |
42021221 |
tcatcatacttagcatcagaaagatcccataaaactttgacttcaaaattttgatattgaaacgtatcagtacctttgttctgtttcaataatagacgag |
42021122 |
T |
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| Q |
113 |
gatttccattgaattttgagaaaacattgacataatcagaatcagaagtgatgtttatgatgaaaccttgtccaatgagtttcttggtccaagttagtgt |
212 |
Q |
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| T |
42021121 |
gatttccattgaattttgagaaaacattgacataatcagaatcagaagtgatgtttatgatgaaaccttgtccaatgagtttcttggtccaagttagtgt |
42021022 |
T |
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| Q |
213 |
gatgagaaattgttgttgaattgagataaagttgagtttgtatatgcaagtaactgaattttgaattgaaaggttattgagttttggaatgattgaatct |
312 |
Q |
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| T |
42021021 |
gatgagaaattgttgttgaattgagataaagttgagtttgtatatgcaagtaactgaattttgaattgaaaggttattgagttttggaatgattgaattt |
42020922 |
T |
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| Q |
313 |
gaaggtcttgaacaatataaatcagatactctaatagcatgttcattgtaacaagatgttatgcctctcataattttttgaacaaagaaaaataaaatat |
412 |
Q |
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| T |
42020921 |
gaaggtcttgaacaatataaatcagatactctaatagcatgttcattgtaacaagatgttatgcctctcataattttttgaacaaagaaaaataaaatat |
42020822 |
T |
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| Q |
413 |
gtgagtttgtggttcagaaataaaac |
438 |
Q |
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| T |
42020821 |
gtgagtttgtggttcagaaataaaac |
42020796 |
T |
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