View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17889_low_8 (Length: 246)
Name: NF17889_low_8
Description: NF17889
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17889_low_8 |
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| [»] scaffold0536 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 10 - 232
Target Start/End: Complemental strand, 17253919 - 17253697
Alignment:
| Q |
10 |
aagaaaattccgggtcaaatgacacgtgatagtggaatcttagtataaaaattgaggtataacacttttgctcacctggaacaaagacatggttgtgatc |
109 |
Q |
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| T |
17253919 |
aagaaaattccgggtcaaacgacacgtgacagtggaatcttaggttaaaaattggggtataacacttttgctcacctgaaacaaagacatggttgtgatc |
17253820 |
T |
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| Q |
110 |
aagtaccaactttgtgattttccacactccttccttgctcacattaaatctcaccatagctttgcaatttgttcttgaatcaactccttcataagacact |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17253819 |
aagtaccaactttgtgattttccacactccttccttgctcacattaaatctcaccatagctttgcaatttgttcttgaatcaactccttcataagacact |
17253720 |
T |
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| Q |
210 |
tcaccttcagattcattattctt |
232 |
Q |
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||||||||| ||||||||||||| |
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| T |
17253719 |
tcaccttcatattcattattctt |
17253697 |
T |
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Target: chr4 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 117 - 232
Target Start/End: Original strand, 18896268 - 18896383
Alignment:
| Q |
117 |
aactttgtgattttccacactccttccttgctcacattaaatctcaccatagctttgcaatttgttcttgaatcaactccttcataagacacttcacctt |
216 |
Q |
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|||||||| | |||||| |||||||||||||| |||||||| |||||||||||||||||||||| ||||||||| ||| |||||||| |||||||||| |
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| T |
18896268 |
aactttgtaactttccaaactccttccttgctaacattaaacctcaccatagctttgcaatttgcccttgaatcagctctttcataagccacttcacctc |
18896367 |
T |
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| Q |
217 |
cagattcattattctt |
232 |
Q |
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| T |
18896368 |
catattcattattctt |
18896383 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 62; Significance: 7e-27; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 97 - 226
Target Start/End: Complemental strand, 25941337 - 25941208
Alignment:
| Q |
97 |
catggttgtgatcaagtaccaactttgtgattttccacactccttccttgctcacattaaatctcaccatagctttgcaatttgttcttgaatcaactcc |
196 |
Q |
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|||| |||||||| | || |||||| || | ||||||||||||||||||| ||||||||||||| ||||||||| ||||||||||||||||||| ||| |
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| T |
25941337 |
catgattgtgatccaatatcaacttggtaactttccacactccttccttggtcacattaaatctgaccatagctaagcaatttgttcttgaatcagctct |
25941238 |
T |
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| Q |
197 |
ttcataagacacttcaccttcagattcatt |
226 |
Q |
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| T |
25941237 |
tttataagccacttcaccatcaggttcatt |
25941208 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0536 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0536
Description:
Target: scaffold0536; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 138 - 186
Target Start/End: Complemental strand, 8722 - 8674
Alignment:
| Q |
138 |
ccttccttgctcacattaaatctcaccatagctttgcaatttgttcttg |
186 |
Q |
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| T |
8722 |
ccttccttgctcacattaaatctcaccatagcattacaatttgttcttg |
8674 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 97 - 191
Target Start/End: Original strand, 25030753 - 25030847
Alignment:
| Q |
97 |
catggttgtgatcaagtaccaactttgtgattttccacactccttccttgctcacattaaatctcaccatagctttgcaatttgttcttgaatca |
191 |
Q |
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| T |
25030753 |
catggttgtgatccattatcaacttagtaattcgccattctccatccttgctaacattaaatcgcaccattgctttacaatttgtccttgaatca |
25030847 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 97 - 191
Target Start/End: Original strand, 17965196 - 17965290
Alignment:
| Q |
97 |
catggttgtgatcaagtaccaactttgtgattttccacactccttccttgctcacattaaatctcaccatagctttgcaatttgttcttgaatca |
191 |
Q |
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||||||||||||| | || |||||| || ||| ||| |||| |||||||| |||||||||| |||||| ||||| |||||||| ||||||||| |
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| T |
17965196 |
catggttgtgatccattatcaacttagtaattcgccattctccatccttgctaacattaaatcgcaccattgctttacaatttgtccttgaatca |
17965290 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 97 - 191
Target Start/End: Complemental strand, 46204410 - 46204316
Alignment:
| Q |
97 |
catggttgtgatcaagtaccaactttgtgattttccacactccttccttgctcacattaaatctcaccatagctttgcaatttgttcttgaatca |
191 |
Q |
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| T |
46204410 |
catggttgtgatccattatcaacttagtaattcgccattctccatccttgctaacattaaatcgcaccattgctttacaatttgtccttgaatca |
46204316 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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